Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03340 and QEN71_RS03345 overlap by 11 nucleotides QEN71_RS03345 and QEN71_RS03350 are separated by 111 nucleotides
QEN71_RS03340: QEN71_RS03340 - sugar ABC transporter permease, at 742,613 to 743,491
_RS03340
QEN71_RS03345: QEN71_RS03345 - carbohydrate ABC transporter permease, at 743,481 to 744,338
_RS03345
QEN71_RS03350: QEN71_RS03350 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 744,450 to 745,565
_RS03350
Position (kb) 743
744
745 Strain fitness (log2 ratio) -2
-1
0
1
2 at 742.529 kb on + strand at 742.529 kb on + strand at 742.530 kb on - strand at 742.530 kb on - strand at 742.530 kb on - strand at 742.561 kb on + strand at 742.561 kb on + strand at 742.561 kb on + strand at 742.562 kb on - strand at 742.562 kb on - strand at 742.562 kb on - strand at 742.689 kb on - strand at 742.713 kb on - strand, within QEN71_RS03340 at 742.713 kb on - strand, within QEN71_RS03340 at 742.748 kb on + strand, within QEN71_RS03340 at 742.749 kb on - strand, within QEN71_RS03340 at 742.772 kb on + strand, within QEN71_RS03340 at 743.210 kb on + strand, within QEN71_RS03340 at 743.210 kb on + strand, within QEN71_RS03340 at 743.211 kb on - strand, within QEN71_RS03340 at 743.211 kb on - strand, within QEN71_RS03340 at 743.211 kb on - strand, within QEN71_RS03340 at 743.211 kb on - strand, within QEN71_RS03340 at 743.360 kb on + strand, within QEN71_RS03340 at 743.360 kb on + strand, within QEN71_RS03340 at 743.360 kb on + strand, within QEN71_RS03340 at 743.360 kb on + strand, within QEN71_RS03340 at 743.360 kb on + strand, within QEN71_RS03340 at 743.360 kb on + strand, within QEN71_RS03340 at 743.361 kb on - strand, within QEN71_RS03340 at 743.361 kb on - strand, within QEN71_RS03340 at 743.361 kb on - strand, within QEN71_RS03340 at 743.361 kb on - strand, within QEN71_RS03340 at 743.361 kb on - strand, within QEN71_RS03340 at 743.456 kb on + strand at 743.456 kb on + strand at 743.456 kb on + strand at 743.456 kb on + strand at 743.456 kb on + strand at 743.457 kb on - strand at 743.489 kb on + strand at 743.489 kb on + strand at 743.489 kb on + strand at 743.490 kb on - strand at 743.517 kb on + strand at 743.544 kb on + strand at 743.544 kb on + strand at 743.545 kb on - strand at 743.562 kb on + strand at 743.562 kb on + strand at 743.562 kb on + strand at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.678 kb on + strand, within QEN71_RS03345 at 743.679 kb on - strand, within QEN71_RS03345 at 743.679 kb on - strand, within QEN71_RS03345 at 743.679 kb on - strand, within QEN71_RS03345 at 743.781 kb on + strand, within QEN71_RS03345 at 743.781 kb on + strand, within QEN71_RS03345 at 743.782 kb on - strand, within QEN71_RS03345 at 743.782 kb on - strand, within QEN71_RS03345 at 743.946 kb on + strand, within QEN71_RS03345 at 743.946 kb on + strand, within QEN71_RS03345 at 743.947 kb on - strand, within QEN71_RS03345 at 743.985 kb on + strand, within QEN71_RS03345 at 743.985 kb on + strand, within QEN71_RS03345 at 743.985 kb on + strand, within QEN71_RS03345 at 743.985 kb on + strand, within QEN71_RS03345 at 743.985 kb on + strand, within QEN71_RS03345 at 743.986 kb on - strand, within QEN71_RS03345 at 743.986 kb on - strand, within QEN71_RS03345 at 743.986 kb on - strand, within QEN71_RS03345 at 744.203 kb on + strand, within QEN71_RS03345 at 744.203 kb on + strand, within QEN71_RS03345 at 744.225 kb on + strand, within QEN71_RS03345 at 744.225 kb on + strand, within QEN71_RS03345 at 744.225 kb on + strand, within QEN71_RS03345 at 744.225 kb on + strand, within QEN71_RS03345 at 744.225 kb on + strand, within QEN71_RS03345 at 744.226 kb on - strand, within QEN71_RS03345 at 744.226 kb on - strand, within QEN71_RS03345 at 744.226 kb on - strand, within QEN71_RS03345 at 744.226 kb on - strand, within QEN71_RS03345 at 744.226 kb on - strand, within QEN71_RS03345 at 744.279 kb on + strand at 744.280 kb on - strand at 744.280 kb on - strand at 744.297 kb on + strand at 744.336 kb on + strand at 744.337 kb on - strand at 744.337 kb on - strand at 744.388 kb on + strand at 744.409 kb on + strand at 744.409 kb on + strand at 744.410 kb on - strand at 744.426 kb on + strand at 744.427 kb on - strand at 744.427 kb on - strand at 744.435 kb on + strand at 744.435 kb on + strand at 744.435 kb on + strand at 744.436 kb on - strand at 744.477 kb on + strand at 744.477 kb on + strand at 744.477 kb on + strand at 744.477 kb on + strand at 744.478 kb on - strand at 744.478 kb on - strand at 744.486 kb on + strand at 744.486 kb on + strand at 744.575 kb on + strand, within QEN71_RS03350 at 744.575 kb on + strand, within QEN71_RS03350 at 744.702 kb on + strand, within QEN71_RS03350 at 744.702 kb on + strand, within QEN71_RS03350 at 744.702 kb on + strand, within QEN71_RS03350 at 744.702 kb on + strand, within QEN71_RS03350 at 744.950 kb on + strand, within QEN71_RS03350 at 744.950 kb on + strand, within QEN71_RS03350 at 744.950 kb on + strand, within QEN71_RS03350 at 745.018 kb on - strand, within QEN71_RS03350 at 745.018 kb on - strand, within QEN71_RS03350 at 745.116 kb on + strand, within QEN71_RS03350 at 745.116 kb on + strand, within QEN71_RS03350 at 745.117 kb on - strand, within QEN71_RS03350 at 745.117 kb on - strand, within QEN71_RS03350 at 745.117 kb on - strand, within QEN71_RS03350 at 745.151 kb on + strand, within QEN71_RS03350 at 745.184 kb on + strand, within QEN71_RS03350 at 745.184 kb on + strand, within QEN71_RS03350 at 745.185 kb on - strand, within QEN71_RS03350 at 745.185 kb on - strand, within QEN71_RS03350 at 745.263 kb on - strand, within QEN71_RS03350 at 745.263 kb on - strand, within QEN71_RS03350 at 745.263 kb on - strand, within QEN71_RS03350
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 742,529 + -0.1 742,529 + -0.2 742,530 - -1.2 742,530 - -0.7 742,530 - +1.3 742,561 + +2.0 742,561 + -0.8 742,561 + +0.1 742,562 - -0.1 742,562 - +0.3 742,562 - +1.2 742,689 - -0.3 742,713 - QEN71_RS03340 0.11 +0.4 742,713 - QEN71_RS03340 0.11 +0.0 742,748 + QEN71_RS03340 0.15 +1.7 742,749 - QEN71_RS03340 0.15 +0.1 742,772 + QEN71_RS03340 0.18 -0.5 743,210 + QEN71_RS03340 0.68 +0.1 743,210 + QEN71_RS03340 0.68 +0.2 743,211 - QEN71_RS03340 0.68 -0.0 743,211 - QEN71_RS03340 0.68 -0.7 743,211 - QEN71_RS03340 0.68 +1.4 743,211 - QEN71_RS03340 0.68 -0.2 743,360 + QEN71_RS03340 0.85 -0.3 743,360 + QEN71_RS03340 0.85 +0.9 743,360 + QEN71_RS03340 0.85 +0.6 743,360 + QEN71_RS03340 0.85 -0.8 743,360 + QEN71_RS03340 0.85 +0.2 743,360 + QEN71_RS03340 0.85 +0.3 743,361 - QEN71_RS03340 0.85 +0.1 743,361 - QEN71_RS03340 0.85 -0.0 743,361 - QEN71_RS03340 0.85 -0.8 743,361 - QEN71_RS03340 0.85 -0.5 743,361 - QEN71_RS03340 0.85 -0.4 743,456 + +0.1 743,456 + +0.7 743,456 + -0.4 743,456 + +0.7 743,456 + -0.4 743,457 - +0.3 743,489 + +0.4 743,489 + -0.3 743,489 + +0.8 743,490 - -0.6 743,517 + -0.9 743,544 + -0.6 743,544 + -0.2 743,545 - -0.2 743,562 + +0.7 743,562 + +1.4 743,562 + -1.1 743,678 + QEN71_RS03345 0.23 +0.5 743,678 + QEN71_RS03345 0.23 +0.7 743,678 + QEN71_RS03345 0.23 +0.2 743,678 + QEN71_RS03345 0.23 -1.2 743,678 + QEN71_RS03345 0.23 -0.6 743,678 + QEN71_RS03345 0.23 -1.8 743,678 + QEN71_RS03345 0.23 -0.3 743,679 - QEN71_RS03345 0.23 -0.0 743,679 - QEN71_RS03345 0.23 +0.0 743,679 - QEN71_RS03345 0.23 -0.2 743,781 + QEN71_RS03345 0.35 -0.1 743,781 + QEN71_RS03345 0.35 -1.3 743,782 - QEN71_RS03345 0.35 +0.3 743,782 - QEN71_RS03345 0.35 +0.0 743,946 + QEN71_RS03345 0.54 +0.3 743,946 + QEN71_RS03345 0.54 +0.3 743,947 - QEN71_RS03345 0.54 +0.8 743,985 + QEN71_RS03345 0.59 -0.0 743,985 + QEN71_RS03345 0.59 +0.2 743,985 + QEN71_RS03345 0.59 -1.3 743,985 + QEN71_RS03345 0.59 +1.1 743,985 + QEN71_RS03345 0.59 +0.7 743,986 - QEN71_RS03345 0.59 +1.7 743,986 - QEN71_RS03345 0.59 +0.7 743,986 - QEN71_RS03345 0.59 -0.3 744,203 + QEN71_RS03345 0.84 -0.6 744,203 + QEN71_RS03345 0.84 +0.6 744,225 + QEN71_RS03345 0.87 -1.4 744,225 + QEN71_RS03345 0.87 +1.6 744,225 + QEN71_RS03345 0.87 +0.5 744,225 + QEN71_RS03345 0.87 -0.1 744,225 + QEN71_RS03345 0.87 -0.2 744,226 - QEN71_RS03345 0.87 -0.3 744,226 - QEN71_RS03345 0.87 +1.6 744,226 - QEN71_RS03345 0.87 +1.3 744,226 - QEN71_RS03345 0.87 -0.7 744,226 - QEN71_RS03345 0.87 +0.0 744,279 + +1.2 744,280 - -0.3 744,280 - +0.9 744,297 + -0.3 744,336 + -0.4 744,337 - +1.1 744,337 - +0.4 744,388 + +0.2 744,409 + -1.3 744,409 + -0.2 744,410 - -1.4 744,426 + +0.0 744,427 - -0.2 744,427 - -1.3 744,435 + -0.0 744,435 + -1.7 744,435 + -0.1 744,436 - -0.5 744,477 + -0.6 744,477 + +0.1 744,477 + +0.5 744,477 + -0.8 744,478 - -0.2 744,478 - +0.3 744,486 + +0.2 744,486 + +0.4 744,575 + QEN71_RS03350 0.11 +0.1 744,575 + QEN71_RS03350 0.11 +0.9 744,702 + QEN71_RS03350 0.23 +0.2 744,702 + QEN71_RS03350 0.23 +0.3 744,702 + QEN71_RS03350 0.23 +0.2 744,702 + QEN71_RS03350 0.23 +0.3 744,950 + QEN71_RS03350 0.45 -1.6 744,950 + QEN71_RS03350 0.45 +0.7 744,950 + QEN71_RS03350 0.45 -0.1 745,018 - QEN71_RS03350 0.51 +0.6 745,018 - QEN71_RS03350 0.51 +0.6 745,116 + QEN71_RS03350 0.60 -1.0 745,116 + QEN71_RS03350 0.60 -0.1 745,117 - QEN71_RS03350 0.60 -0.3 745,117 - QEN71_RS03350 0.60 -1.8 745,117 - QEN71_RS03350 0.60 +0.8 745,151 + QEN71_RS03350 0.63 +0.5 745,184 + QEN71_RS03350 0.66 -0.6 745,184 + QEN71_RS03350 0.66 +0.1 745,185 - QEN71_RS03350 0.66 -0.5 745,185 - QEN71_RS03350 0.66 -0.1 745,263 - QEN71_RS03350 0.73 -2.4 745,263 - QEN71_RS03350 0.73 +0.1 745,263 - QEN71_RS03350 0.73 +0.4
Or see this region's nucleotide sequence