Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04227 and MIT1002_04228 are separated by 83 nucleotides MIT1002_04228 and MIT1002_04229 are separated by 60 nucleotides MIT1002_04229 and MIT1002_04230 are separated by 244 nucleotides MIT1002_04230 and MIT1002_04231 are separated by 264 nucleotides
MIT1002_04227: MIT1002_04227 - hypothetical protein, at 95,405 to 96,172
_04227
MIT1002_04228: MIT1002_04228 - Excalibur calcium-binding domain protein, at 96,256 to 96,987
_04228
MIT1002_04229: MIT1002_04229 - N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated, at 97,048 to 97,704
_04229
MIT1002_04230: MIT1002_04230 - hypothetical protein, at 97,949 to 98,215
_04230
MIT1002_04231: MIT1002_04231 - hypothetical protein, at 98,480 to 98,878
_04231
Position (kb) 97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 96.048 kb on - strand, within MIT1002_04227 at 96.055 kb on + strand, within MIT1002_04227 at 96.061 kb on - strand, within MIT1002_04227 at 96.114 kb on - strand at 96.151 kb on - strand at 96.229 kb on - strand at 96.327 kb on + strand at 96.327 kb on + strand at 96.327 kb on + strand at 96.340 kb on + strand, within MIT1002_04228 at 96.356 kb on + strand, within MIT1002_04228 at 96.390 kb on + strand, within MIT1002_04228 at 96.398 kb on - strand, within MIT1002_04228 at 96.399 kb on + strand, within MIT1002_04228 at 96.437 kb on + strand, within MIT1002_04228 at 96.437 kb on + strand, within MIT1002_04228 at 96.437 kb on + strand, within MIT1002_04228 at 96.437 kb on + strand, within MIT1002_04228 at 96.437 kb on + strand, within MIT1002_04228 at 96.445 kb on - strand, within MIT1002_04228 at 96.445 kb on - strand, within MIT1002_04228 at 96.445 kb on - strand, within MIT1002_04228 at 96.445 kb on - strand, within MIT1002_04228 at 96.445 kb on - strand, within MIT1002_04228 at 96.447 kb on - strand, within MIT1002_04228 at 96.447 kb on - strand, within MIT1002_04228 at 96.473 kb on - strand, within MIT1002_04228 at 96.478 kb on + strand, within MIT1002_04228 at 96.479 kb on + strand, within MIT1002_04228 at 96.479 kb on + strand, within MIT1002_04228 at 96.497 kb on - strand, within MIT1002_04228 at 96.497 kb on - strand, within MIT1002_04228 at 96.554 kb on - strand, within MIT1002_04228 at 96.558 kb on + strand, within MIT1002_04228 at 96.566 kb on - strand, within MIT1002_04228 at 96.620 kb on - strand, within MIT1002_04228 at 96.623 kb on + strand, within MIT1002_04228 at 96.623 kb on + strand, within MIT1002_04228 at 96.623 kb on + strand, within MIT1002_04228 at 96.631 kb on - strand, within MIT1002_04228 at 96.648 kb on + strand, within MIT1002_04228 at 96.660 kb on + strand, within MIT1002_04228 at 96.660 kb on + strand, within MIT1002_04228 at 96.701 kb on - strand, within MIT1002_04228 at 96.701 kb on - strand, within MIT1002_04228 at 96.712 kb on - strand, within MIT1002_04228 at 96.712 kb on - strand, within MIT1002_04228 at 96.719 kb on + strand, within MIT1002_04228 at 96.722 kb on - strand, within MIT1002_04228 at 96.722 kb on - strand, within MIT1002_04228 at 96.728 kb on - strand, within MIT1002_04228 at 96.773 kb on + strand, within MIT1002_04228 at 96.781 kb on - strand, within MIT1002_04228 at 96.781 kb on - strand, within MIT1002_04228 at 96.783 kb on + strand, within MIT1002_04228 at 96.807 kb on - strand, within MIT1002_04228 at 96.816 kb on + strand, within MIT1002_04228 at 96.855 kb on - strand, within MIT1002_04228 at 96.857 kb on + strand, within MIT1002_04228 at 96.859 kb on - strand, within MIT1002_04228 at 96.882 kb on - strand, within MIT1002_04228 at 96.892 kb on + strand, within MIT1002_04228 at 96.906 kb on + strand, within MIT1002_04228 at 96.907 kb on + strand, within MIT1002_04228 at 96.907 kb on + strand, within MIT1002_04228 at 96.912 kb on + strand, within MIT1002_04228 at 96.915 kb on - strand at 96.917 kb on + strand at 96.922 kb on + strand at 96.930 kb on - strand at 96.930 kb on - strand at 96.989 kb on + strand at 96.989 kb on + strand at 96.989 kb on + strand at 96.994 kb on + strand at 96.997 kb on - strand at 96.997 kb on - strand at 96.997 kb on - strand at 97.003 kb on + strand at 97.028 kb on - strand at 97.028 kb on - strand at 97.048 kb on - strand at 97.114 kb on + strand, within MIT1002_04229 at 97.134 kb on + strand, within MIT1002_04229 at 97.146 kb on + strand, within MIT1002_04229 at 97.165 kb on - strand, within MIT1002_04229 at 97.167 kb on - strand, within MIT1002_04229 at 97.169 kb on + strand, within MIT1002_04229 at 97.186 kb on - strand, within MIT1002_04229 at 97.237 kb on - strand, within MIT1002_04229 at 97.263 kb on + strand, within MIT1002_04229 at 97.273 kb on + strand, within MIT1002_04229 at 97.281 kb on + strand, within MIT1002_04229 at 97.289 kb on - strand, within MIT1002_04229 at 97.311 kb on + strand, within MIT1002_04229 at 97.324 kb on + strand, within MIT1002_04229 at 97.331 kb on - strand, within MIT1002_04229 at 97.336 kb on - strand, within MIT1002_04229 at 97.390 kb on - strand, within MIT1002_04229 at 97.411 kb on + strand, within MIT1002_04229 at 97.412 kb on + strand, within MIT1002_04229 at 97.413 kb on + strand, within MIT1002_04229 at 97.413 kb on + strand, within MIT1002_04229 at 97.413 kb on + strand, within MIT1002_04229 at 97.414 kb on - strand, within MIT1002_04229 at 97.414 kb on - strand, within MIT1002_04229 at 97.420 kb on - strand, within MIT1002_04229 at 97.421 kb on - strand, within MIT1002_04229 at 97.427 kb on + strand, within MIT1002_04229 at 97.427 kb on + strand, within MIT1002_04229 at 97.427 kb on + strand, within MIT1002_04229 at 97.427 kb on + strand, within MIT1002_04229 at 97.427 kb on + strand, within MIT1002_04229 at 97.432 kb on - strand, within MIT1002_04229 at 97.435 kb on - strand, within MIT1002_04229 at 97.435 kb on - strand, within MIT1002_04229 at 97.494 kb on + strand, within MIT1002_04229 at 97.499 kb on + strand, within MIT1002_04229 at 97.502 kb on - strand, within MIT1002_04229 at 97.504 kb on - strand, within MIT1002_04229 at 97.540 kb on + strand, within MIT1002_04229 at 97.554 kb on - strand, within MIT1002_04229 at 97.561 kb on + strand, within MIT1002_04229 at 97.603 kb on + strand, within MIT1002_04229 at 97.603 kb on + strand, within MIT1002_04229 at 97.637 kb on + strand, within MIT1002_04229 at 97.744 kb on - strand at 97.757 kb on + strand at 97.760 kb on - strand at 97.771 kb on + strand at 97.776 kb on + strand at 97.784 kb on - strand at 97.796 kb on - strand at 97.838 kb on - strand at 97.842 kb on + strand at 97.860 kb on - strand at 97.860 kb on - strand at 97.862 kb on + strand at 97.865 kb on - strand at 97.866 kb on - strand at 97.892 kb on + strand at 97.906 kb on + strand at 97.912 kb on + strand at 97.920 kb on - strand at 97.932 kb on - strand at 97.941 kb on - strand at 98.055 kb on - strand, within MIT1002_04230 at 98.059 kb on + strand, within MIT1002_04230 at 98.059 kb on + strand, within MIT1002_04230 at 98.105 kb on - strand, within MIT1002_04230 at 98.115 kb on - strand, within MIT1002_04230 at 98.172 kb on + strand, within MIT1002_04230 at 98.172 kb on + strand, within MIT1002_04230 at 98.180 kb on - strand, within MIT1002_04230 at 98.205 kb on + strand at 98.240 kb on - strand at 98.267 kb on + strand at 98.274 kb on + strand at 98.309 kb on + strand at 98.328 kb on + strand at 98.328 kb on + strand at 98.336 kb on - strand at 98.336 kb on - strand at 98.338 kb on + strand at 98.338 kb on - strand at 98.339 kb on - strand at 98.341 kb on + strand at 98.348 kb on - strand at 98.471 kb on - strand at 98.564 kb on + strand, within MIT1002_04231 at 98.564 kb on - strand, within MIT1002_04231 at 98.566 kb on - strand, within MIT1002_04231 at 98.583 kb on + strand, within MIT1002_04231 at 98.592 kb on - strand, within MIT1002_04231 at 98.592 kb on - strand, within MIT1002_04231 at 98.669 kb on - strand, within MIT1002_04231 at 98.670 kb on - strand, within MIT1002_04231 at 98.675 kb on - strand, within MIT1002_04231
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1 remove 96,048 - MIT1002_04227 0.84 +0.7 96,055 + MIT1002_04227 0.85 -0.3 96,061 - MIT1002_04227 0.85 -0.4 96,114 - -0.3 96,151 - -0.7 96,229 - -1.5 96,327 + -0.8 96,327 + +0.9 96,327 + +0.4 96,340 + MIT1002_04228 0.11 +0.4 96,356 + MIT1002_04228 0.14 +0.8 96,390 + MIT1002_04228 0.18 +0.7 96,398 - MIT1002_04228 0.19 +0.0 96,399 + MIT1002_04228 0.20 +0.6 96,437 + MIT1002_04228 0.25 +2.4 96,437 + MIT1002_04228 0.25 +0.7 96,437 + MIT1002_04228 0.25 +0.9 96,437 + MIT1002_04228 0.25 +0.2 96,437 + MIT1002_04228 0.25 -0.1 96,445 - MIT1002_04228 0.26 +0.1 96,445 - MIT1002_04228 0.26 +0.7 96,445 - MIT1002_04228 0.26 -1.4 96,445 - MIT1002_04228 0.26 -0.2 96,445 - MIT1002_04228 0.26 +0.3 96,447 - MIT1002_04228 0.26 -2.4 96,447 - MIT1002_04228 0.26 +0.7 96,473 - MIT1002_04228 0.30 +0.4 96,478 + MIT1002_04228 0.30 +0.4 96,479 + MIT1002_04228 0.30 -0.6 96,479 + MIT1002_04228 0.30 +0.0 96,497 - MIT1002_04228 0.33 +1.4 96,497 - MIT1002_04228 0.33 +0.2 96,554 - MIT1002_04228 0.41 -0.1 96,558 + MIT1002_04228 0.41 -0.6 96,566 - MIT1002_04228 0.42 -0.2 96,620 - MIT1002_04228 0.50 -0.3 96,623 + MIT1002_04228 0.50 +0.7 96,623 + MIT1002_04228 0.50 +0.9 96,623 + MIT1002_04228 0.50 +0.1 96,631 - MIT1002_04228 0.51 +0.4 96,648 + MIT1002_04228 0.54 +0.4 96,660 + MIT1002_04228 0.55 +0.3 96,660 + MIT1002_04228 0.55 -1.8 96,701 - MIT1002_04228 0.61 -0.7 96,701 - MIT1002_04228 0.61 +0.1 96,712 - MIT1002_04228 0.62 -0.9 96,712 - MIT1002_04228 0.62 -0.9 96,719 + MIT1002_04228 0.63 +0.7 96,722 - MIT1002_04228 0.64 +0.4 96,722 - MIT1002_04228 0.64 -0.7 96,728 - MIT1002_04228 0.64 +0.4 96,773 + MIT1002_04228 0.71 +0.4 96,781 - MIT1002_04228 0.72 -0.0 96,781 - MIT1002_04228 0.72 -0.2 96,783 + MIT1002_04228 0.72 -0.8 96,807 - MIT1002_04228 0.75 +0.6 96,816 + MIT1002_04228 0.77 -0.6 96,855 - MIT1002_04228 0.82 +1.0 96,857 + MIT1002_04228 0.82 +0.4 96,859 - MIT1002_04228 0.82 +0.6 96,882 - MIT1002_04228 0.86 +1.2 96,892 + MIT1002_04228 0.87 -0.5 96,906 + MIT1002_04228 0.89 +0.6 96,907 + MIT1002_04228 0.89 -0.5 96,907 + MIT1002_04228 0.89 +0.4 96,912 + MIT1002_04228 0.90 -0.2 96,915 - +0.6 96,917 + -1.7 96,922 + -1.1 96,930 - +0.7 96,930 - -1.0 96,989 + +0.5 96,989 + -0.8 96,989 + +0.6 96,994 + -1.1 96,997 - -1.0 96,997 - -0.9 96,997 - +1.9 97,003 + -0.4 97,028 - +1.0 97,028 - +1.1 97,048 - -0.9 97,114 + MIT1002_04229 0.10 -0.2 97,134 + MIT1002_04229 0.13 +1.1 97,146 + MIT1002_04229 0.15 +0.0 97,165 - MIT1002_04229 0.18 +0.5 97,167 - MIT1002_04229 0.18 -0.7 97,169 + MIT1002_04229 0.18 -0.4 97,186 - MIT1002_04229 0.21 +0.1 97,237 - MIT1002_04229 0.29 +1.7 97,263 + MIT1002_04229 0.33 -0.3 97,273 + MIT1002_04229 0.34 +0.4 97,281 + MIT1002_04229 0.35 -0.9 97,289 - MIT1002_04229 0.37 -0.6 97,311 + MIT1002_04229 0.40 -3.4 97,324 + MIT1002_04229 0.42 +0.7 97,331 - MIT1002_04229 0.43 -1.2 97,336 - MIT1002_04229 0.44 -1.4 97,390 - MIT1002_04229 0.52 +0.2 97,411 + MIT1002_04229 0.55 -0.4 97,412 + MIT1002_04229 0.55 -0.7 97,413 + MIT1002_04229 0.56 -0.3 97,413 + MIT1002_04229 0.56 -0.7 97,413 + MIT1002_04229 0.56 +1.3 97,414 - MIT1002_04229 0.56 +0.1 97,414 - MIT1002_04229 0.56 -1.0 97,420 - MIT1002_04229 0.57 +1.0 97,421 - MIT1002_04229 0.57 -0.7 97,427 + MIT1002_04229 0.58 +0.6 97,427 + MIT1002_04229 0.58 +0.1 97,427 + MIT1002_04229 0.58 -1.8 97,427 + MIT1002_04229 0.58 +0.5 97,427 + MIT1002_04229 0.58 +0.0 97,432 - MIT1002_04229 0.58 +0.6 97,435 - MIT1002_04229 0.59 +0.5 97,435 - MIT1002_04229 0.59 +0.9 97,494 + MIT1002_04229 0.68 +0.8 97,499 + MIT1002_04229 0.69 +0.5 97,502 - MIT1002_04229 0.69 -0.8 97,504 - MIT1002_04229 0.69 +0.4 97,540 + MIT1002_04229 0.75 +0.6 97,554 - MIT1002_04229 0.77 -0.7 97,561 + MIT1002_04229 0.78 -0.3 97,603 + MIT1002_04229 0.84 +0.2 97,603 + MIT1002_04229 0.84 -0.4 97,637 + MIT1002_04229 0.90 +0.2 97,744 - +0.8 97,757 + +0.6 97,760 - +0.3 97,771 + +1.2 97,776 + -0.4 97,784 - -1.3 97,796 - +0.3 97,838 - +1.0 97,842 + +1.5 97,860 - +0.3 97,860 - +0.3 97,862 + +0.7 97,865 - +0.0 97,866 - +0.2 97,892 + +0.1 97,906 + +0.4 97,912 + -0.2 97,920 - +0.4 97,932 - +1.9 97,941 - +0.3 98,055 - MIT1002_04230 0.40 -0.1 98,059 + MIT1002_04230 0.41 -2.2 98,059 + MIT1002_04230 0.41 +0.7 98,105 - MIT1002_04230 0.58 -0.3 98,115 - MIT1002_04230 0.62 -0.5 98,172 + MIT1002_04230 0.84 +1.0 98,172 + MIT1002_04230 0.84 -0.6 98,180 - MIT1002_04230 0.87 -0.8 98,205 + +0.8 98,240 - +0.7 98,267 + -0.0 98,274 + +0.5 98,309 + +0.0 98,328 + +0.1 98,328 + -2.4 98,336 - -1.4 98,336 - +0.5 98,338 + +0.6 98,338 - +0.4 98,339 - +0.5 98,341 + +0.2 98,348 - -0.2 98,471 - +0.3 98,564 + MIT1002_04231 0.21 +2.1 98,564 - MIT1002_04231 0.21 +1.5 98,566 - MIT1002_04231 0.22 +0.4 98,583 + MIT1002_04231 0.26 -1.9 98,592 - MIT1002_04231 0.28 -2.5 98,592 - MIT1002_04231 0.28 -2.2 98,669 - MIT1002_04231 0.47 -2.4 98,670 - MIT1002_04231 0.48 +0.4 98,675 - MIT1002_04231 0.49 -0.9
Or see this region's nucleotide sequence