Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04213 and MIT1002_04214 are separated by 15 nucleotides MIT1002_04214 and MIT1002_04215 are separated by 9 nucleotides
MIT1002_04213: MIT1002_04213 - Blue-light-activated protein, at 78,086 to 81,028
_04213
MIT1002_04214: MIT1002_04214 - Blue-light-activated protein, at 81,044 to 83,605
_04214
MIT1002_04215: MIT1002_04215 - Bacteriophytochrome cph2, at 83,615 to 84,757
_04215
Position (kb) 81
82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 80.072 kb on + strand, within MIT1002_04213 at 80.073 kb on + strand, within MIT1002_04213 at 80.075 kb on - strand, within MIT1002_04213 at 80.077 kb on - strand, within MIT1002_04213 at 80.096 kb on - strand, within MIT1002_04213 at 80.113 kb on - strand, within MIT1002_04213 at 80.121 kb on - strand, within MIT1002_04213 at 80.169 kb on + strand, within MIT1002_04213 at 80.195 kb on + strand, within MIT1002_04213 at 80.195 kb on + strand, within MIT1002_04213 at 80.200 kb on + strand, within MIT1002_04213 at 80.203 kb on - strand, within MIT1002_04213 at 80.205 kb on + strand, within MIT1002_04213 at 80.285 kb on + strand, within MIT1002_04213 at 80.285 kb on + strand, within MIT1002_04213 at 80.285 kb on + strand, within MIT1002_04213 at 80.293 kb on - strand, within MIT1002_04213 at 80.304 kb on - strand, within MIT1002_04213 at 80.322 kb on + strand, within MIT1002_04213 at 80.330 kb on - strand, within MIT1002_04213 at 80.348 kb on + strand, within MIT1002_04213 at 80.356 kb on - strand, within MIT1002_04213 at 80.356 kb on - strand, within MIT1002_04213 at 80.382 kb on + strand, within MIT1002_04213 at 80.390 kb on - strand, within MIT1002_04213 at 80.390 kb on - strand, within MIT1002_04213 at 80.390 kb on - strand, within MIT1002_04213 at 80.390 kb on - strand, within MIT1002_04213 at 80.424 kb on + strand, within MIT1002_04213 at 80.426 kb on + strand, within MIT1002_04213 at 80.514 kb on + strand, within MIT1002_04213 at 80.562 kb on + strand, within MIT1002_04213 at 80.562 kb on + strand, within MIT1002_04213 at 80.570 kb on - strand, within MIT1002_04213 at 80.572 kb on + strand, within MIT1002_04213 at 80.580 kb on - strand, within MIT1002_04213 at 80.580 kb on - strand, within MIT1002_04213 at 80.582 kb on + strand, within MIT1002_04213 at 80.590 kb on - strand, within MIT1002_04213 at 80.622 kb on + strand, within MIT1002_04213 at 80.702 kb on + strand, within MIT1002_04213 at 80.710 kb on - strand, within MIT1002_04213 at 80.736 kb on + strand at 80.742 kb on + strand at 80.764 kb on - strand at 80.774 kb on + strand at 80.774 kb on - strand at 80.810 kb on + strand at 80.810 kb on + strand at 80.815 kb on + strand at 80.818 kb on - strand at 80.823 kb on - strand at 80.848 kb on + strand at 80.848 kb on + strand at 80.856 kb on - strand at 80.872 kb on + strand at 80.880 kb on - strand at 80.944 kb on - strand at 80.984 kb on - strand at 80.986 kb on - strand at 80.988 kb on - strand at 80.991 kb on - strand at 80.991 kb on - strand at 81.101 kb on - strand at 81.158 kb on + strand at 81.185 kb on + strand at 81.197 kb on + strand at 81.197 kb on + strand at 81.197 kb on + strand at 81.401 kb on + strand, within MIT1002_04214 at 81.402 kb on + strand, within MIT1002_04214 at 81.403 kb on + strand, within MIT1002_04214 at 81.480 kb on + strand, within MIT1002_04214 at 81.488 kb on + strand, within MIT1002_04214 at 81.488 kb on - strand, within MIT1002_04214 at 81.496 kb on - strand, within MIT1002_04214 at 81.499 kb on + strand, within MIT1002_04214 at 81.499 kb on + strand, within MIT1002_04214 at 81.501 kb on + strand, within MIT1002_04214 at 81.507 kb on - strand, within MIT1002_04214 at 81.509 kb on - strand, within MIT1002_04214 at 81.529 kb on + strand, within MIT1002_04214 at 81.557 kb on + strand, within MIT1002_04214 at 81.565 kb on - strand, within MIT1002_04214 at 81.575 kb on + strand, within MIT1002_04214 at 81.575 kb on + strand, within MIT1002_04214 at 81.575 kb on + strand, within MIT1002_04214 at 81.583 kb on - strand, within MIT1002_04214 at 81.583 kb on - strand, within MIT1002_04214 at 81.583 kb on - strand, within MIT1002_04214 at 81.583 kb on - strand, within MIT1002_04214 at 81.583 kb on - strand, within MIT1002_04214 at 81.583 kb on - strand, within MIT1002_04214 at 81.583 kb on - strand, within MIT1002_04214 at 81.583 kb on - strand, within MIT1002_04214 at 81.726 kb on + strand, within MIT1002_04214 at 81.726 kb on + strand, within MIT1002_04214 at 81.745 kb on + strand, within MIT1002_04214 at 81.753 kb on - strand, within MIT1002_04214 at 81.779 kb on - strand, within MIT1002_04214 at 81.902 kb on - strand, within MIT1002_04214 at 81.907 kb on + strand, within MIT1002_04214 at 81.974 kb on - strand, within MIT1002_04214 at 81.984 kb on - strand, within MIT1002_04214 at 82.003 kb on + strand, within MIT1002_04214 at 82.003 kb on + strand, within MIT1002_04214 at 82.003 kb on + strand, within MIT1002_04214 at 82.011 kb on - strand, within MIT1002_04214 at 82.095 kb on - strand, within MIT1002_04214 at 82.097 kb on + strand, within MIT1002_04214 at 82.097 kb on + strand, within MIT1002_04214 at 82.105 kb on - strand, within MIT1002_04214 at 82.110 kb on - strand, within MIT1002_04214 at 82.110 kb on - strand, within MIT1002_04214 at 82.140 kb on - strand, within MIT1002_04214 at 82.177 kb on - strand, within MIT1002_04214 at 82.185 kb on + strand, within MIT1002_04214 at 82.188 kb on - strand, within MIT1002_04214 at 82.188 kb on - strand, within MIT1002_04214 at 82.188 kb on - strand, within MIT1002_04214 at 82.188 kb on - strand, within MIT1002_04214 at 82.251 kb on - strand, within MIT1002_04214 at 82.299 kb on + strand, within MIT1002_04214 at 82.548 kb on + strand, within MIT1002_04214 at 82.548 kb on + strand, within MIT1002_04214 at 82.556 kb on - strand, within MIT1002_04214 at 82.580 kb on + strand, within MIT1002_04214 at 82.658 kb on + strand, within MIT1002_04214 at 82.738 kb on + strand, within MIT1002_04214 at 82.746 kb on - strand, within MIT1002_04214 at 82.746 kb on - strand, within MIT1002_04214 at 82.782 kb on - strand, within MIT1002_04214 at 82.806 kb on + strand, within MIT1002_04214 at 82.854 kb on + strand, within MIT1002_04214 at 82.854 kb on + strand, within MIT1002_04214 at 82.887 kb on + strand, within MIT1002_04214 at 82.899 kb on + strand, within MIT1002_04214 at 82.907 kb on - strand, within MIT1002_04214 at 82.914 kb on + strand, within MIT1002_04214 at 82.914 kb on - strand, within MIT1002_04214 at 82.932 kb on - strand, within MIT1002_04214 at 82.953 kb on + strand, within MIT1002_04214 at 83.062 kb on - strand, within MIT1002_04214 at 83.076 kb on - strand, within MIT1002_04214 at 83.149 kb on - strand, within MIT1002_04214 at 83.231 kb on + strand, within MIT1002_04214 at 83.284 kb on + strand, within MIT1002_04214 at 83.322 kb on - strand, within MIT1002_04214 at 83.378 kb on - strand at 83.530 kb on + strand at 83.535 kb on + strand at 83.538 kb on - strand at 83.538 kb on - strand at 83.538 kb on - strand at 83.538 kb on - strand at 83.538 kb on - strand at 83.582 kb on + strand at 83.602 kb on - strand at 83.667 kb on + strand at 83.667 kb on + strand at 83.736 kb on + strand, within MIT1002_04215 at 83.744 kb on - strand, within MIT1002_04215 at 83.751 kb on - strand, within MIT1002_04215 at 83.763 kb on - strand, within MIT1002_04215 at 83.824 kb on + strand, within MIT1002_04215 at 83.912 kb on - strand, within MIT1002_04215 at 83.914 kb on + strand, within MIT1002_04215 at 83.926 kb on + strand, within MIT1002_04215 at 83.926 kb on + strand, within MIT1002_04215 at 83.926 kb on + strand, within MIT1002_04215 at 83.926 kb on + strand, within MIT1002_04215 at 83.941 kb on + strand, within MIT1002_04215 at 83.941 kb on + strand, within MIT1002_04215 at 83.949 kb on + strand, within MIT1002_04215 at 83.949 kb on - strand, within MIT1002_04215 at 83.949 kb on - strand, within MIT1002_04215 at 83.949 kb on - strand, within MIT1002_04215 at 83.950 kb on - strand, within MIT1002_04215 at 83.957 kb on - strand, within MIT1002_04215 at 83.958 kb on - strand, within MIT1002_04215 at 83.963 kb on - strand, within MIT1002_04215 at 83.963 kb on - strand, within MIT1002_04215 at 83.982 kb on + strand, within MIT1002_04215 at 84.070 kb on + strand, within MIT1002_04215 at 84.128 kb on + strand, within MIT1002_04215 at 84.164 kb on + strand, within MIT1002_04215 at 84.251 kb on + strand, within MIT1002_04215 at 84.380 kb on + strand, within MIT1002_04215 at 84.388 kb on - strand, within MIT1002_04215 at 84.419 kb on - strand, within MIT1002_04215 at 84.419 kb on - strand, within MIT1002_04215 at 84.435 kb on + strand, within MIT1002_04215 at 84.435 kb on + strand, within MIT1002_04215 at 84.435 kb on + strand, within MIT1002_04215 at 84.435 kb on + strand, within MIT1002_04215 at 84.435 kb on + strand, within MIT1002_04215 at 84.435 kb on + strand, within MIT1002_04215 at 84.443 kb on - strand, within MIT1002_04215 at 84.443 kb on - strand, within MIT1002_04215 at 84.443 kb on - strand, within MIT1002_04215 at 84.445 kb on + strand, within MIT1002_04215 at 84.445 kb on + strand, within MIT1002_04215 at 84.495 kb on + strand, within MIT1002_04215 at 84.501 kb on - strand, within MIT1002_04215 at 84.545 kb on + strand, within MIT1002_04215 at 84.553 kb on - strand, within MIT1002_04215
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1 remove 80,072 + MIT1002_04213 0.67 +1.1 80,073 + MIT1002_04213 0.68 +0.3 80,075 - MIT1002_04213 0.68 +0.1 80,077 - MIT1002_04213 0.68 -0.7 80,096 - MIT1002_04213 0.68 +0.3 80,113 - MIT1002_04213 0.69 -0.1 80,121 - MIT1002_04213 0.69 +1.6 80,169 + MIT1002_04213 0.71 +0.3 80,195 + MIT1002_04213 0.72 -1.0 80,195 + MIT1002_04213 0.72 +0.8 80,200 + MIT1002_04213 0.72 +1.0 80,203 - MIT1002_04213 0.72 -0.0 80,205 + MIT1002_04213 0.72 +1.9 80,285 + MIT1002_04213 0.75 -0.4 80,285 + MIT1002_04213 0.75 -0.7 80,285 + MIT1002_04213 0.75 +0.8 80,293 - MIT1002_04213 0.75 -1.2 80,304 - MIT1002_04213 0.75 -0.4 80,322 + MIT1002_04213 0.76 -0.2 80,330 - MIT1002_04213 0.76 -2.0 80,348 + MIT1002_04213 0.77 +1.2 80,356 - MIT1002_04213 0.77 -0.4 80,356 - MIT1002_04213 0.77 -0.1 80,382 + MIT1002_04213 0.78 -1.3 80,390 - MIT1002_04213 0.78 -0.2 80,390 - MIT1002_04213 0.78 +0.2 80,390 - MIT1002_04213 0.78 +0.7 80,390 - MIT1002_04213 0.78 +0.3 80,424 + MIT1002_04213 0.79 -0.4 80,426 + MIT1002_04213 0.80 +0.2 80,514 + MIT1002_04213 0.83 +0.1 80,562 + MIT1002_04213 0.84 -1.7 80,562 + MIT1002_04213 0.84 +0.6 80,570 - MIT1002_04213 0.84 -0.6 80,572 + MIT1002_04213 0.84 -0.2 80,580 - MIT1002_04213 0.85 +0.1 80,580 - MIT1002_04213 0.85 +0.1 80,582 + MIT1002_04213 0.85 -0.4 80,590 - MIT1002_04213 0.85 +0.5 80,622 + MIT1002_04213 0.86 +0.7 80,702 + MIT1002_04213 0.89 -0.1 80,710 - MIT1002_04213 0.89 +0.7 80,736 + +0.9 80,742 + +0.0 80,764 - -1.2 80,774 + +0.4 80,774 - -1.8 80,810 + +2.5 80,810 + -1.1 80,815 + +0.6 80,818 - +1.1 80,823 - -1.1 80,848 + -1.3 80,848 + +0.4 80,856 - +1.2 80,872 + +0.8 80,880 - +0.9 80,944 - +0.4 80,984 - -0.3 80,986 - +0.1 80,988 - +1.6 80,991 - -0.1 80,991 - -1.0 81,101 - -3.2 81,158 + -0.3 81,185 + -0.1 81,197 + -0.4 81,197 + +0.6 81,197 + +0.7 81,401 + MIT1002_04214 0.14 -0.2 81,402 + MIT1002_04214 0.14 -0.6 81,403 + MIT1002_04214 0.14 +0.5 81,480 + MIT1002_04214 0.17 +1.2 81,488 + MIT1002_04214 0.17 +0.6 81,488 - MIT1002_04214 0.17 -0.4 81,496 - MIT1002_04214 0.18 +0.3 81,499 + MIT1002_04214 0.18 +0.5 81,499 + MIT1002_04214 0.18 +0.3 81,501 + MIT1002_04214 0.18 -0.5 81,507 - MIT1002_04214 0.18 -0.3 81,509 - MIT1002_04214 0.18 +0.2 81,529 + MIT1002_04214 0.19 -0.4 81,557 + MIT1002_04214 0.20 +0.9 81,565 - MIT1002_04214 0.20 +0.6 81,575 + MIT1002_04214 0.21 -0.3 81,575 + MIT1002_04214 0.21 -1.1 81,575 + MIT1002_04214 0.21 +0.1 81,583 - MIT1002_04214 0.21 +0.4 81,583 - MIT1002_04214 0.21 +0.1 81,583 - MIT1002_04214 0.21 +1.3 81,583 - MIT1002_04214 0.21 +0.2 81,583 - MIT1002_04214 0.21 -3.2 81,583 - MIT1002_04214 0.21 +1.3 81,583 - MIT1002_04214 0.21 -0.0 81,583 - MIT1002_04214 0.21 -0.1 81,726 + MIT1002_04214 0.27 -1.7 81,726 + MIT1002_04214 0.27 +1.0 81,745 + MIT1002_04214 0.27 +0.8 81,753 - MIT1002_04214 0.28 +1.6 81,779 - MIT1002_04214 0.29 +0.2 81,902 - MIT1002_04214 0.33 +0.4 81,907 + MIT1002_04214 0.34 -0.3 81,974 - MIT1002_04214 0.36 -0.1 81,984 - MIT1002_04214 0.37 +0.1 82,003 + MIT1002_04214 0.37 -2.4 82,003 + MIT1002_04214 0.37 +0.8 82,003 + MIT1002_04214 0.37 -0.7 82,011 - MIT1002_04214 0.38 +1.3 82,095 - MIT1002_04214 0.41 -1.3 82,097 + MIT1002_04214 0.41 +0.1 82,097 + MIT1002_04214 0.41 -0.2 82,105 - MIT1002_04214 0.41 +0.1 82,110 - MIT1002_04214 0.42 +0.1 82,110 - MIT1002_04214 0.42 -0.7 82,140 - MIT1002_04214 0.43 +0.0 82,177 - MIT1002_04214 0.44 -1.6 82,185 + MIT1002_04214 0.45 +0.7 82,188 - MIT1002_04214 0.45 +0.5 82,188 - MIT1002_04214 0.45 -0.4 82,188 - MIT1002_04214 0.45 +0.3 82,188 - MIT1002_04214 0.45 +0.1 82,251 - MIT1002_04214 0.47 +0.6 82,299 + MIT1002_04214 0.49 +0.0 82,548 + MIT1002_04214 0.59 -0.5 82,548 + MIT1002_04214 0.59 +1.1 82,556 - MIT1002_04214 0.59 -0.1 82,580 + MIT1002_04214 0.60 +0.4 82,658 + MIT1002_04214 0.63 -0.4 82,738 + MIT1002_04214 0.66 +0.1 82,746 - MIT1002_04214 0.66 -0.5 82,746 - MIT1002_04214 0.66 +0.1 82,782 - MIT1002_04214 0.68 +0.1 82,806 + MIT1002_04214 0.69 +0.7 82,854 + MIT1002_04214 0.71 +0.0 82,854 + MIT1002_04214 0.71 -0.2 82,887 + MIT1002_04214 0.72 +0.5 82,899 + MIT1002_04214 0.72 +1.8 82,907 - MIT1002_04214 0.73 +1.4 82,914 + MIT1002_04214 0.73 +0.8 82,914 - MIT1002_04214 0.73 +0.1 82,932 - MIT1002_04214 0.74 +0.6 82,953 + MIT1002_04214 0.75 +0.6 83,062 - MIT1002_04214 0.79 -0.4 83,076 - MIT1002_04214 0.79 -0.2 83,149 - MIT1002_04214 0.82 +0.3 83,231 + MIT1002_04214 0.85 +0.2 83,284 + MIT1002_04214 0.87 -0.6 83,322 - MIT1002_04214 0.89 -0.2 83,378 - +1.0 83,530 + +0.4 83,535 + -0.5 83,538 - -0.4 83,538 - -0.0 83,538 - -0.4 83,538 - -0.5 83,538 - +0.4 83,582 + +2.3 83,602 - +0.2 83,667 + +1.0 83,667 + -2.0 83,736 + MIT1002_04215 0.11 -0.4 83,744 - MIT1002_04215 0.11 -0.6 83,751 - MIT1002_04215 0.12 +0.7 83,763 - MIT1002_04215 0.13 +0.2 83,824 + MIT1002_04215 0.18 +0.8 83,912 - MIT1002_04215 0.26 -0.0 83,914 + MIT1002_04215 0.26 +0.7 83,926 + MIT1002_04215 0.27 -0.2 83,926 + MIT1002_04215 0.27 +0.7 83,926 + MIT1002_04215 0.27 -0.1 83,926 + MIT1002_04215 0.27 +0.0 83,941 + MIT1002_04215 0.29 -0.8 83,941 + MIT1002_04215 0.29 -0.3 83,949 + MIT1002_04215 0.29 +0.5 83,949 - MIT1002_04215 0.29 +0.8 83,949 - MIT1002_04215 0.29 -0.4 83,949 - MIT1002_04215 0.29 +0.5 83,950 - MIT1002_04215 0.29 -3.5 83,957 - MIT1002_04215 0.30 +0.0 83,958 - MIT1002_04215 0.30 -0.5 83,963 - MIT1002_04215 0.30 +0.4 83,963 - MIT1002_04215 0.30 +0.3 83,982 + MIT1002_04215 0.32 -0.2 84,070 + MIT1002_04215 0.40 -0.3 84,128 + MIT1002_04215 0.45 +0.6 84,164 + MIT1002_04215 0.48 -0.6 84,251 + MIT1002_04215 0.56 -0.7 84,380 + MIT1002_04215 0.67 -1.0 84,388 - MIT1002_04215 0.68 -2.1 84,419 - MIT1002_04215 0.70 +1.1 84,419 - MIT1002_04215 0.70 -0.3 84,435 + MIT1002_04215 0.72 -1.5 84,435 + MIT1002_04215 0.72 -2.4 84,435 + MIT1002_04215 0.72 +0.2 84,435 + MIT1002_04215 0.72 +1.4 84,435 + MIT1002_04215 0.72 -0.1 84,435 + MIT1002_04215 0.72 +0.1 84,443 - MIT1002_04215 0.72 +0.1 84,443 - MIT1002_04215 0.72 +0.6 84,443 - MIT1002_04215 0.72 -2.5 84,445 + MIT1002_04215 0.73 -0.7 84,445 + MIT1002_04215 0.73 +0.1 84,495 + MIT1002_04215 0.77 -0.6 84,501 - MIT1002_04215 0.78 +0.2 84,545 + MIT1002_04215 0.81 -0.5 84,553 - MIT1002_04215 0.82 +0.2
Or see this region's nucleotide sequence