Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03703 and MIT1002_03704 are separated by 128 nucleotides MIT1002_03704 and MIT1002_03705 are separated by 20 nucleotides
MIT1002_03703: MIT1002_03703 - hypothetical protein, at 4,136,363 to 4,137,049
_03703
MIT1002_03704: MIT1002_03704 - hypothetical protein, at 4,137,178 to 4,138,278
_03704
MIT1002_03705: MIT1002_03705 - transport protein TonB, at 4,138,299 to 4,139,477
_03705
Position (kb) 4137
4138
4139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4136.252 kb on + strand at 4136.260 kb on - strand at 4136.319 kb on + strand at 4136.355 kb on + strand at 4136.535 kb on + strand, within MIT1002_03703 at 4136.543 kb on - strand, within MIT1002_03703 at 4136.543 kb on - strand, within MIT1002_03703 at 4136.555 kb on - strand, within MIT1002_03703 at 4136.714 kb on - strand, within MIT1002_03703 at 4136.770 kb on + strand, within MIT1002_03703 at 4136.805 kb on + strand, within MIT1002_03703 at 4136.815 kb on + strand, within MIT1002_03703 at 4136.825 kb on - strand, within MIT1002_03703 at 4136.825 kb on - strand, within MIT1002_03703 at 4136.828 kb on - strand, within MIT1002_03703 at 4136.836 kb on - strand, within MIT1002_03703 at 4136.875 kb on - strand, within MIT1002_03703 at 4136.894 kb on + strand, within MIT1002_03703 at 4136.897 kb on - strand, within MIT1002_03703 at 4136.902 kb on - strand, within MIT1002_03703 at 4136.902 kb on - strand, within MIT1002_03703 at 4136.906 kb on + strand, within MIT1002_03703 at 4136.906 kb on + strand, within MIT1002_03703 at 4136.906 kb on + strand, within MIT1002_03703 at 4136.906 kb on + strand, within MIT1002_03703 at 4136.906 kb on + strand, within MIT1002_03703 at 4136.907 kb on - strand, within MIT1002_03703 at 4136.913 kb on - strand, within MIT1002_03703 at 4136.914 kb on - strand, within MIT1002_03703 at 4136.914 kb on - strand, within MIT1002_03703 at 4136.914 kb on - strand, within MIT1002_03703 at 4136.914 kb on - strand, within MIT1002_03703 at 4136.914 kb on - strand, within MIT1002_03703 at 4136.914 kb on - strand, within MIT1002_03703 at 4136.928 kb on + strand, within MIT1002_03703 at 4136.933 kb on + strand, within MIT1002_03703 at 4136.950 kb on - strand, within MIT1002_03703 at 4136.950 kb on - strand, within MIT1002_03703 at 4136.958 kb on - strand, within MIT1002_03703 at 4137.092 kb on + strand at 4137.098 kb on + strand at 4137.100 kb on + strand at 4137.100 kb on + strand at 4137.118 kb on + strand at 4137.141 kb on - strand at 4137.175 kb on - strand at 4137.212 kb on + strand at 4137.212 kb on + strand at 4137.217 kb on - strand at 4137.220 kb on - strand at 4137.220 kb on - strand at 4137.290 kb on - strand, within MIT1002_03704 at 4137.479 kb on + strand, within MIT1002_03704 at 4137.479 kb on + strand, within MIT1002_03704 at 4137.506 kb on + strand, within MIT1002_03704 at 4137.542 kb on + strand, within MIT1002_03704 at 4137.559 kb on + strand, within MIT1002_03704 at 4137.559 kb on + strand, within MIT1002_03704 at 4137.559 kb on + strand, within MIT1002_03704 at 4137.559 kb on + strand, within MIT1002_03704 at 4137.559 kb on + strand, within MIT1002_03704 at 4137.559 kb on + strand, within MIT1002_03704 at 4137.567 kb on - strand, within MIT1002_03704 at 4137.567 kb on - strand, within MIT1002_03704 at 4137.567 kb on - strand, within MIT1002_03704 at 4137.567 kb on - strand, within MIT1002_03704 at 4137.567 kb on - strand, within MIT1002_03704 at 4137.567 kb on - strand, within MIT1002_03704 at 4137.603 kb on + strand, within MIT1002_03704 at 4137.638 kb on - strand, within MIT1002_03704 at 4137.646 kb on + strand, within MIT1002_03704 at 4137.716 kb on + strand, within MIT1002_03704 at 4137.718 kb on + strand, within MIT1002_03704 at 4137.725 kb on - strand, within MIT1002_03704 at 4137.758 kb on + strand, within MIT1002_03704 at 4137.769 kb on + strand, within MIT1002_03704 at 4137.769 kb on + strand, within MIT1002_03704 at 4137.775 kb on + strand, within MIT1002_03704 at 4137.777 kb on - strand, within MIT1002_03704 at 4137.828 kb on + strand, within MIT1002_03704 at 4137.828 kb on + strand, within MIT1002_03704 at 4137.975 kb on + strand, within MIT1002_03704 at 4137.990 kb on + strand, within MIT1002_03704 at 4137.996 kb on - strand, within MIT1002_03704 at 4138.010 kb on + strand, within MIT1002_03704 at 4138.011 kb on - strand, within MIT1002_03704 at 4138.026 kb on - strand, within MIT1002_03704 at 4138.041 kb on - strand, within MIT1002_03704 at 4138.069 kb on - strand, within MIT1002_03704 at 4138.083 kb on - strand, within MIT1002_03704 at 4138.112 kb on + strand, within MIT1002_03704 at 4138.121 kb on + strand, within MIT1002_03704 at 4138.129 kb on - strand, within MIT1002_03704 at 4138.187 kb on + strand at 4138.230 kb on + strand at 4138.230 kb on + strand at 4138.230 kb on + strand at 4138.235 kb on + strand at 4138.235 kb on + strand at 4138.265 kb on + strand at 4138.265 kb on + strand at 4138.290 kb on + strand at 4138.296 kb on + strand at 4138.296 kb on + strand at 4138.296 kb on + strand at 4138.304 kb on - strand at 4138.347 kb on - strand at 4138.365 kb on - strand at 4138.367 kb on + strand at 4138.369 kb on + strand at 4138.369 kb on + strand at 4138.375 kb on - strand at 4138.501 kb on + strand, within MIT1002_03705 at 4138.501 kb on + strand, within MIT1002_03705 at 4138.530 kb on - strand, within MIT1002_03705 at 4138.549 kb on - strand, within MIT1002_03705 at 4138.578 kb on - strand, within MIT1002_03705 at 4138.629 kb on + strand, within MIT1002_03705 at 4138.658 kb on + strand, within MIT1002_03705 at 4138.658 kb on - strand, within MIT1002_03705 at 4138.708 kb on + strand, within MIT1002_03705 at 4138.778 kb on + strand, within MIT1002_03705 at 4138.786 kb on - strand, within MIT1002_03705 at 4138.793 kb on - strand, within MIT1002_03705 at 4138.793 kb on - strand, within MIT1002_03705 at 4138.825 kb on + strand, within MIT1002_03705 at 4138.825 kb on + strand, within MIT1002_03705 at 4138.831 kb on - strand, within MIT1002_03705 at 4138.865 kb on + strand, within MIT1002_03705 at 4138.865 kb on + strand, within MIT1002_03705 at 4138.890 kb on + strand, within MIT1002_03705 at 4138.950 kb on + strand, within MIT1002_03705 at 4139.026 kb on - strand, within MIT1002_03705 at 4139.028 kb on + strand, within MIT1002_03705 at 4139.139 kb on + strand, within MIT1002_03705 at 4139.189 kb on - strand, within MIT1002_03705
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1 remove 4,136,252 + -0.3 4,136,260 - +0.1 4,136,319 + -0.5 4,136,355 + -0.0 4,136,535 + MIT1002_03703 0.25 -0.2 4,136,543 - MIT1002_03703 0.26 +0.3 4,136,543 - MIT1002_03703 0.26 +0.0 4,136,555 - MIT1002_03703 0.28 -0.7 4,136,714 - MIT1002_03703 0.51 +0.6 4,136,770 + MIT1002_03703 0.59 -0.5 4,136,805 + MIT1002_03703 0.64 +0.5 4,136,815 + MIT1002_03703 0.66 +0.9 4,136,825 - MIT1002_03703 0.67 +0.5 4,136,825 - MIT1002_03703 0.67 +0.2 4,136,828 - MIT1002_03703 0.68 +0.2 4,136,836 - MIT1002_03703 0.69 -1.1 4,136,875 - MIT1002_03703 0.75 -0.5 4,136,894 + MIT1002_03703 0.77 +0.5 4,136,897 - MIT1002_03703 0.78 -0.1 4,136,902 - MIT1002_03703 0.78 +1.6 4,136,902 - MIT1002_03703 0.78 +2.0 4,136,906 + MIT1002_03703 0.79 +0.3 4,136,906 + MIT1002_03703 0.79 +0.1 4,136,906 + MIT1002_03703 0.79 +1.3 4,136,906 + MIT1002_03703 0.79 -0.4 4,136,906 + MIT1002_03703 0.79 -2.0 4,136,907 - MIT1002_03703 0.79 +0.6 4,136,913 - MIT1002_03703 0.80 +0.3 4,136,914 - MIT1002_03703 0.80 -2.1 4,136,914 - MIT1002_03703 0.80 +2.4 4,136,914 - MIT1002_03703 0.80 -0.6 4,136,914 - MIT1002_03703 0.80 +1.0 4,136,914 - MIT1002_03703 0.80 -0.0 4,136,914 - MIT1002_03703 0.80 +0.6 4,136,928 + MIT1002_03703 0.82 -1.0 4,136,933 + MIT1002_03703 0.83 +0.1 4,136,950 - MIT1002_03703 0.85 -1.7 4,136,950 - MIT1002_03703 0.85 +0.2 4,136,958 - MIT1002_03703 0.87 +1.6 4,137,092 + +0.3 4,137,098 + -1.9 4,137,100 + -1.0 4,137,100 + -0.4 4,137,118 + -0.7 4,137,141 - -0.4 4,137,175 - -2.9 4,137,212 + +0.2 4,137,212 + -0.5 4,137,217 - +0.3 4,137,220 - +0.7 4,137,220 - +1.3 4,137,290 - MIT1002_03704 0.10 -0.2 4,137,479 + MIT1002_03704 0.27 -0.1 4,137,479 + MIT1002_03704 0.27 +1.6 4,137,506 + MIT1002_03704 0.30 -2.4 4,137,542 + MIT1002_03704 0.33 -0.1 4,137,559 + MIT1002_03704 0.35 -1.3 4,137,559 + MIT1002_03704 0.35 -0.2 4,137,559 + MIT1002_03704 0.35 +0.6 4,137,559 + MIT1002_03704 0.35 -0.1 4,137,559 + MIT1002_03704 0.35 +0.1 4,137,559 + MIT1002_03704 0.35 -0.3 4,137,567 - MIT1002_03704 0.35 -0.1 4,137,567 - MIT1002_03704 0.35 +0.3 4,137,567 - MIT1002_03704 0.35 +0.4 4,137,567 - MIT1002_03704 0.35 +0.4 4,137,567 - MIT1002_03704 0.35 -0.8 4,137,567 - MIT1002_03704 0.35 -1.0 4,137,603 + MIT1002_03704 0.39 -0.6 4,137,638 - MIT1002_03704 0.42 +0.3 4,137,646 + MIT1002_03704 0.43 +0.1 4,137,716 + MIT1002_03704 0.49 -0.8 4,137,718 + MIT1002_03704 0.49 -0.1 4,137,725 - MIT1002_03704 0.50 +0.2 4,137,758 + MIT1002_03704 0.53 +0.1 4,137,769 + MIT1002_03704 0.54 -1.5 4,137,769 + MIT1002_03704 0.54 -0.5 4,137,775 + MIT1002_03704 0.54 -0.4 4,137,777 - MIT1002_03704 0.54 -0.1 4,137,828 + MIT1002_03704 0.59 +0.7 4,137,828 + MIT1002_03704 0.59 -0.2 4,137,975 + MIT1002_03704 0.72 -1.2 4,137,990 + MIT1002_03704 0.74 +2.8 4,137,996 - MIT1002_03704 0.74 +1.4 4,138,010 + MIT1002_03704 0.76 +0.4 4,138,011 - MIT1002_03704 0.76 -0.8 4,138,026 - MIT1002_03704 0.77 +1.1 4,138,041 - MIT1002_03704 0.78 -0.9 4,138,069 - MIT1002_03704 0.81 -0.3 4,138,083 - MIT1002_03704 0.82 +0.0 4,138,112 + MIT1002_03704 0.85 -1.1 4,138,121 + MIT1002_03704 0.86 -0.8 4,138,129 - MIT1002_03704 0.86 -1.7 4,138,187 + -0.5 4,138,230 + -2.1 4,138,230 + +0.0 4,138,230 + +0.8 4,138,235 + -0.3 4,138,235 + +0.7 4,138,265 + -0.5 4,138,265 + +0.0 4,138,290 + +0.6 4,138,296 + +0.3 4,138,296 + +0.5 4,138,296 + -0.7 4,138,304 - -0.2 4,138,347 - +0.5 4,138,365 - -1.6 4,138,367 + -1.6 4,138,369 + +1.3 4,138,369 + -1.9 4,138,375 - +0.4 4,138,501 + MIT1002_03705 0.17 +0.2 4,138,501 + MIT1002_03705 0.17 -0.2 4,138,530 - MIT1002_03705 0.20 -0.2 4,138,549 - MIT1002_03705 0.21 -0.1 4,138,578 - MIT1002_03705 0.24 -0.4 4,138,629 + MIT1002_03705 0.28 +0.4 4,138,658 + MIT1002_03705 0.30 -2.6 4,138,658 - MIT1002_03705 0.30 +0.2 4,138,708 + MIT1002_03705 0.35 +0.5 4,138,778 + MIT1002_03705 0.41 +0.1 4,138,786 - MIT1002_03705 0.41 +0.8 4,138,793 - MIT1002_03705 0.42 -0.1 4,138,793 - MIT1002_03705 0.42 -0.1 4,138,825 + MIT1002_03705 0.45 +0.8 4,138,825 + MIT1002_03705 0.45 +0.9 4,138,831 - MIT1002_03705 0.45 -1.8 4,138,865 + MIT1002_03705 0.48 -0.3 4,138,865 + MIT1002_03705 0.48 +1.5 4,138,890 + MIT1002_03705 0.50 -1.4 4,138,950 + MIT1002_03705 0.55 -0.6 4,139,026 - MIT1002_03705 0.62 -1.6 4,139,028 + MIT1002_03705 0.62 -0.1 4,139,139 + MIT1002_03705 0.71 -0.1 4,139,189 - MIT1002_03705 0.75 -0.1
Or see this region's nucleotide sequence