Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03512

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
3,924,885	+				-0.4
3,924,885	+				-0.1
3,924,906	+				+0.1
3,924,906	+				-0.2
3,924,906	+				-0.3
3,924,911	+				-0.8
3,924,950	-		MIT1002_03511	0.12	-2.5
3,924,950	-		MIT1002_03511	0.12	+1.0
3,924,953	-		MIT1002_03511	0.12	+0.9
3,924,955	-		MIT1002_03511	0.12	+0.7
3,924,958	-		MIT1002_03511	0.13	-0.2
3,924,960	+		MIT1002_03511	0.13	-2.6
3,924,960	+		MIT1002_03511	0.13	+0.3
3,924,968	-		MIT1002_03511	0.14	-0.1
3,924,989	+		MIT1002_03511	0.16	-0.3
3,925,010	-		MIT1002_03511	0.18	-0.1
3,925,092	+		MIT1002_03511	0.27	+0.3
3,925,102	+		MIT1002_03511	0.29	+0.9
3,925,102	+		MIT1002_03511	0.29	+0.1
3,925,104	-		MIT1002_03511	0.29	-0.3
3,925,104	-		MIT1002_03511	0.29	-0.8
3,925,104	-		MIT1002_03511	0.29	+0.2
3,925,110	-		MIT1002_03511	0.29	+2.6
3,925,110	-		MIT1002_03511	0.29	-2.1
3,925,110	-		MIT1002_03511	0.29	-1.1
3,925,110	-		MIT1002_03511	0.29	-0.9
3,925,184	+		MIT1002_03511	0.38	-0.7
3,925,197	-		MIT1002_03511	0.39	-0.0
3,925,203	-		MIT1002_03511	0.40	+0.8
3,925,276	-		MIT1002_03511	0.48	-1.2
3,925,285	+		MIT1002_03511	0.49	+1.9
3,925,293	-		MIT1002_03511	0.50	-0.3
3,925,338	+		MIT1002_03511	0.55	-0.1
3,925,340	+		MIT1002_03511	0.55	+0.9
3,925,396	+		MIT1002_03511	0.61	+0.4
3,925,482	-		MIT1002_03511	0.71	+0.1
3,925,527	-		MIT1002_03511	0.75	+0.9
3,925,529	+		MIT1002_03511	0.76	+1.4
3,925,568	+		MIT1002_03511	0.80	-1.3
3,925,666	+				-0.5
3,925,708	+				+1.0
3,925,743	+				+0.4
3,925,751	-				-0.7
3,925,895	-				-2.2
3,925,915	-		MIT1002_03512	0.11	-0.0
3,925,952	-		MIT1002_03512	0.15	-2.5
3,926,035	+		MIT1002_03512	0.23	-0.1
3,926,036	-		MIT1002_03512	0.23	-0.8
3,926,043	-		MIT1002_03512	0.24	-0.4
3,926,055	+		MIT1002_03512	0.25	+0.6
3,926,075	-		MIT1002_03512	0.27	+1.0
3,926,084	-		MIT1002_03512	0.28	-0.2
3,926,209	+		MIT1002_03512	0.40	-0.1
3,926,216	+		MIT1002_03512	0.41	+1.5
3,926,235	-		MIT1002_03512	0.42	-0.2
3,926,265	+		MIT1002_03512	0.45	+1.5
3,926,265	+		MIT1002_03512	0.45	-2.2
3,926,265	+		MIT1002_03512	0.45	+0.6
3,926,265	+		MIT1002_03512	0.45	+1.0
3,926,265	+		MIT1002_03512	0.45	+0.0
3,926,265	+		MIT1002_03512	0.45	+0.5
3,926,273	-		MIT1002_03512	0.46	+0.1
3,926,273	-		MIT1002_03512	0.46	-2.8
3,926,273	-		MIT1002_03512	0.46	-1.1
3,926,273	-		MIT1002_03512	0.46	-0.2
3,926,273	-		MIT1002_03512	0.46	+1.0
3,926,273	-		MIT1002_03512	0.46	-2.5
3,926,275	+		MIT1002_03512	0.46	+0.7
3,926,275	+		MIT1002_03512	0.46	+0.2
3,926,321	+		MIT1002_03512	0.51	-0.6
3,926,321	-		MIT1002_03512	0.51	-0.3
3,926,329	-		MIT1002_03512	0.52	-1.3
3,926,334	-		MIT1002_03512	0.52	+1.5
3,926,664	-		MIT1002_03512	0.84	+0.3
3,926,735	-				+0.3
3,926,811	-				-2.0
3,926,811	-				+0.5
3,926,815	+				-0.9
3,926,815	+				-0.1
3,926,871	+				-2.4
3,926,871	+				+0.1
3,926,871	+				-0.0
3,926,964	+		MIT1002_03513	0.27	+0.1
3,926,964	+		MIT1002_03513	0.27	+0.5
3,926,964	+		MIT1002_03513	0.27	+0.7
3,926,966	+		MIT1002_03513	0.28	-0.0
3,926,972	-		MIT1002_03513	0.29	-1.2
3,927,152	-		MIT1002_03513	0.70	+1.5
3,927,195	+		MIT1002_03513	0.80	-1.2
3,927,195	+		MIT1002_03513	0.80	+1.3
3,927,195	+		MIT1002_03513	0.80	-1.7
3,927,195	+		MIT1002_03513	0.80	-0.6
3,927,203	-		MIT1002_03513	0.82	+0.5
3,927,203	-		MIT1002_03513	0.82	-1.5
3,927,203	-		MIT1002_03513	0.82	+1.1
3,927,205	+		MIT1002_03513	0.83	+2.4
3,927,343	+				+0.4
3,927,403	+				+1.8
3,927,406	-				-1.0
3,927,440	-				-0.3
3,927,485	-		MIT1002_03514	0.14	+1.0
3,927,512	-		MIT1002_03514	0.16	+0.2
3,927,572	-		MIT1002_03514	0.23	-0.1
3,927,585	-		MIT1002_03514	0.24	+0.5
3,927,585	-		MIT1002_03514	0.24	-0.7
3,927,598	-		MIT1002_03514	0.25	-0.7
3,927,642	-		MIT1002_03514	0.30	+0.0
3,927,644	+		MIT1002_03514	0.30	-0.1
3,927,644	+		MIT1002_03514	0.30	+0.1
3,927,644	+		MIT1002_03514	0.30	+0.6
3,927,652	-		MIT1002_03514	0.31	+0.5
3,927,652	-		MIT1002_03514	0.31	-1.1
3,927,652	-		MIT1002_03514	0.31	-2.1
3,927,652	-		MIT1002_03514	0.31	+0.1
3,927,652	-		MIT1002_03514	0.31	-2.3
3,927,652	-		MIT1002_03514	0.31	+1.0
3,927,691	-		MIT1002_03514	0.35	-0.5
3,927,700	+		MIT1002_03514	0.35	+0.4
3,927,708	-		MIT1002_03514	0.36	+1.8
3,927,759	+		MIT1002_03514	0.41	-0.2
3,927,809	+		MIT1002_03514	0.46	+0.6