Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02941

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
3,270,264	-				-0.6
3,270,278	-				+0.2
3,270,320	-				+0.1
3,270,364	-		MIT1002_02940	0.16	-0.2
3,270,372	-		MIT1002_02940	0.17	+1.2
3,270,430	+		MIT1002_02940	0.28	+0.1
3,270,430	+		MIT1002_02940	0.28	-1.1
3,270,475	-		MIT1002_02940	0.36	+0.5
3,270,496	+		MIT1002_02940	0.40	-0.0
3,270,515	+		MIT1002_02940	0.43	+0.1
3,270,530	-		MIT1002_02940	0.46	-0.0
3,270,570	-		MIT1002_02940	0.53	-1.1
3,270,589	+		MIT1002_02940	0.57	+0.7
3,270,593	-		MIT1002_02940	0.57	-2.6
3,270,615	-		MIT1002_02940	0.61	-0.6
3,270,621	-		MIT1002_02940	0.62	+1.3
3,270,639	+		MIT1002_02940	0.66	-0.6
3,270,723	-		MIT1002_02940	0.81	+1.3
3,270,760	-		MIT1002_02940	0.87	-0.5
3,270,766	+		MIT1002_02940	0.88	-1.0
3,270,871	+				+0.7
3,270,893	+				+0.3
3,270,893	+				+0.3
3,270,901	-				+0.5
3,270,939	+				+0.1
3,270,940	-				-0.0
3,270,991	+				+0.2
3,271,214	+				-0.0
3,271,222	+				+0.8
3,271,223	-				-0.5
3,271,223	-				-1.4
3,271,223	-				-1.3
3,271,225	-				-0.2
3,271,251	+				-2.7
3,271,344	-		MIT1002_02941	0.12	+1.1
3,271,352	+		MIT1002_02941	0.13	+0.7
3,271,354	-		MIT1002_02941	0.13	-0.4
3,271,400	+		MIT1002_02941	0.18	-3.1
3,271,469	-		MIT1002_02941	0.25	-0.4
3,271,527	+		MIT1002_02941	0.31	-0.4
3,271,566	+		MIT1002_02941	0.35	+0.3
3,271,664	+		MIT1002_02941	0.46	+0.0
3,271,778	+		MIT1002_02941	0.58	+0.1
3,271,824	+		MIT1002_02941	0.62	+0.0
3,271,832	-		MIT1002_02941	0.63	+0.9
3,272,013	-		MIT1002_02941	0.82	-0.4
3,272,062	+		MIT1002_02941	0.87	-2.2
3,272,065	-		MIT1002_02941	0.88	-0.2
3,272,083	+		MIT1002_02941	0.90	-0.6
3,272,083	+		MIT1002_02941	0.90	-0.9
3,272,100	+				-0.3
3,272,208	+				-1.0
3,272,208	+				+0.1
3,272,213	-				+1.0
3,272,323	+				+0.5
3,272,344	-				+0.3
3,272,349	-				-0.5
3,272,354	-				+1.5
3,272,403	+				+0.2
3,272,411	-				-0.6
3,272,520	+		MIT1002_02942	0.15	+1.9
3,272,532	+		MIT1002_02942	0.16	-0.9
3,272,537	+		MIT1002_02942	0.17	+0.7
3,272,537	+		MIT1002_02942	0.17	-0.1
3,272,537	+		MIT1002_02942	0.17	-1.4
3,272,539	+		MIT1002_02942	0.17	+0.1
3,272,545	-		MIT1002_02942	0.17	-1.7
3,272,545	-		MIT1002_02942	0.17	-0.0
3,272,547	-		MIT1002_02942	0.17	+0.8
3,272,576	+		MIT1002_02942	0.20	-0.5
3,272,576	+		MIT1002_02942	0.20	+1.5
3,272,576	+		MIT1002_02942	0.20	+0.1
3,272,584	-		MIT1002_02942	0.21	-2.2
3,272,586	+		MIT1002_02942	0.21	-1.3
3,272,594	-		MIT1002_02942	0.22	+0.8
3,272,594	-		MIT1002_02942	0.22	+0.4
3,272,594	-		MIT1002_02942	0.22	-0.2
3,272,597	+		MIT1002_02942	0.22	-0.8
3,272,597	+		MIT1002_02942	0.22	+0.8
3,272,605	-		MIT1002_02942	0.22	-1.2
3,272,605	-		MIT1002_02942	0.22	+0.0
3,272,605	-		MIT1002_02942	0.22	-0.5
3,272,605	-		MIT1002_02942	0.22	+1.1
3,272,752	+		MIT1002_02942	0.35	+0.1
3,272,760	-		MIT1002_02942	0.36	+1.1
3,272,901	+		MIT1002_02942	0.48	-1.0
3,272,901	+		MIT1002_02942	0.48	-1.5
3,272,901	+		MIT1002_02942	0.48	-0.4
3,272,901	+		MIT1002_02942	0.48	+0.3
3,272,908	+		MIT1002_02942	0.49	+0.1
3,272,909	-		MIT1002_02942	0.49	-1.6
3,272,916	+		MIT1002_02942	0.49	+0.8
3,272,916	+		MIT1002_02942	0.49	-2.1
3,272,980	+		MIT1002_02942	0.55	+0.7
3,272,980	+		MIT1002_02942	0.55	-0.7
3,272,980	+		MIT1002_02942	0.55	+0.2
3,272,987	+		MIT1002_02942	0.55	-0.1
3,272,994	-		MIT1002_02942	0.56	-1.2
3,272,994	-		MIT1002_02942	0.56	+0.6
3,272,994	-		MIT1002_02942	0.56	-0.2
3,272,994	-		MIT1002_02942	0.56	-0.3
3,273,036	-		MIT1002_02942	0.60	+0.3
3,273,131	-		MIT1002_02942	0.68	+0.8