Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02853

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
3,165,472	+				+0.3
3,165,616	+		MIT1002_02852	0.22	+1.6
3,165,616	+		MIT1002_02852	0.22	-0.6
3,165,624	-		MIT1002_02852	0.23	-0.5
3,165,624	-		MIT1002_02852	0.23	-0.3
3,165,624	-		MIT1002_02852	0.23	+1.2
3,165,624	-		MIT1002_02852	0.23	+0.6
3,165,624	-		MIT1002_02852	0.23	+1.4
3,165,624	-		MIT1002_02852	0.23	+1.2
3,165,641	+		MIT1002_02852	0.24	-1.6
3,165,641	+		MIT1002_02852	0.24	-2.3
3,165,641	+		MIT1002_02852	0.24	+1.6
3,165,641	+		MIT1002_02852	0.24	+0.0
3,165,643	+		MIT1002_02852	0.24	-2.3
3,165,643	+		MIT1002_02852	0.24	+1.2
3,165,643	+		MIT1002_02852	0.24	-1.3
3,165,649	-		MIT1002_02852	0.25	+0.0
3,165,649	-		MIT1002_02852	0.25	-0.2
3,165,649	-		MIT1002_02852	0.25	-1.1
3,165,649	-		MIT1002_02852	0.25	-2.8
3,165,649	-		MIT1002_02852	0.25	+0.1
3,165,649	-		MIT1002_02852	0.25	+1.2
3,165,649	-		MIT1002_02852	0.25	+0.2
3,165,651	-		MIT1002_02852	0.25	+0.2
3,165,651	-		MIT1002_02852	0.25	+0.1
3,165,654	+		MIT1002_02852	0.25	-0.7
3,165,655	+		MIT1002_02852	0.26	+0.4
3,165,655	+		MIT1002_02852	0.26	-0.2
3,165,655	+		MIT1002_02852	0.26	+0.8
3,165,663	-		MIT1002_02852	0.26	+1.0
3,165,663	-		MIT1002_02852	0.26	+0.7
3,165,754	-		MIT1002_02852	0.35	+0.2
3,165,909	+		MIT1002_02852	0.51	+0.4
3,165,957	+		MIT1002_02852	0.55	+0.9
3,165,957	+		MIT1002_02852	0.55	+1.4
3,165,998	+		MIT1002_02852	0.59	+0.1
3,166,048	+		MIT1002_02852	0.64	-0.3
3,166,048	+		MIT1002_02852	0.64	+2.7
3,166,096	-		MIT1002_02852	0.69	-0.9
3,166,125	+		MIT1002_02852	0.72	-1.3
3,166,125	+		MIT1002_02852	0.72	+0.4
3,166,125	+		MIT1002_02852	0.72	-0.4
3,166,125	+		MIT1002_02852	0.72	-0.6
3,166,125	+		MIT1002_02852	0.72	+0.4
3,166,125	+		MIT1002_02852	0.72	-1.5
3,166,133	-		MIT1002_02852	0.73	+0.5
3,166,133	-		MIT1002_02852	0.73	+0.1
3,166,133	-		MIT1002_02852	0.73	+0.3
3,166,133	-		MIT1002_02852	0.73	-0.6
3,166,133	-		MIT1002_02852	0.73	+1.1
3,166,133	-		MIT1002_02852	0.73	-1.5
3,166,133	-		MIT1002_02852	0.73	+1.3
3,166,133	-		MIT1002_02852	0.73	+0.3
3,166,133	-		MIT1002_02852	0.73	-0.3
3,166,215	+		MIT1002_02852	0.81	-1.0
3,166,215	+		MIT1002_02852	0.81	-0.4
3,166,223	-		MIT1002_02852	0.81	-0.5
3,166,254	+		MIT1002_02852	0.84	-1.3
3,166,262	-		MIT1002_02852	0.85	-0.1
3,166,292	-		MIT1002_02852	0.88	+0.5
3,166,298	+		MIT1002_02852	0.89	-1.2
3,166,342	+				-1.5
3,166,384	-				+1.1
3,166,390	+				-0.2
3,166,390	+				-1.1
3,166,390	+				+1.2
3,166,398	-				-1.6
3,166,398	-				-0.6
3,166,400	+				+0.8
3,166,434	+				+0.8
3,166,434	+				+0.4
3,166,455	+				+0.6
3,166,463	-				-0.1
3,166,486	-				+0.2
3,166,523	+		MIT1002_02853	0.10	-0.8
3,166,533	+		MIT1002_02853	0.11	+0.9
3,166,551	-		MIT1002_02853	0.13	-2.8
3,166,567	+		MIT1002_02853	0.15	+0.4
3,166,658	-		MIT1002_02853	0.23	+0.3
3,166,660	+		MIT1002_02853	0.23	-0.3
3,166,665	-		MIT1002_02853	0.24	-0.6
3,166,678	+		MIT1002_02853	0.25	+0.6
3,166,690	+		MIT1002_02853	0.26	-2.1
3,166,692	-		MIT1002_02853	0.26	-2.3
3,166,778	+		MIT1002_02853	0.34	-0.2
3,166,786	-		MIT1002_02853	0.35	+0.4
3,166,792	+		MIT1002_02853	0.35	+0.9
3,166,866	+		MIT1002_02853	0.42	-1.8
3,166,963	+		MIT1002_02853	0.51	+1.0
3,166,989	-		MIT1002_02853	0.54	-0.1
3,167,006	+		MIT1002_02853	0.55	-0.9
3,167,053	+		MIT1002_02853	0.60	-0.8
3,167,133	+		MIT1002_02853	0.67	+0.9
3,167,133	-		MIT1002_02853	0.67	-1.3
3,167,135	+		MIT1002_02853	0.67	-0.4
3,167,143	+		MIT1002_02853	0.68	-0.6
3,167,148	+		MIT1002_02853	0.69	-1.5
3,167,150	+		MIT1002_02853	0.69	-0.1
3,167,156	-		MIT1002_02853	0.69	-0.6
3,167,156	-		MIT1002_02853	0.69	-2.3
3,167,158	-		MIT1002_02853	0.70	+0.6
3,167,188	+		MIT1002_02853	0.72	+0.4
3,167,201	+		MIT1002_02853	0.74	-0.1
3,167,372	-		MIT1002_02853	0.89	+0.2
3,167,380	+				-0.0
3,167,388	-				+0.3
3,167,398	-				-0.7
3,167,461	-				-0.8
3,167,475	-				-0.2
3,167,491	+				-2.2
3,167,565	+				+0.3
3,167,565	+				-0.5
3,167,575	+				+0.4
3,167,661	+				-1.2
3,167,697	+		MIT1002_02854	0.11	+0.6
3,167,867	+		MIT1002_02854	0.19	-1.8
3,167,875	-		MIT1002_02854	0.20	+1.2
3,167,891	+		MIT1002_02854	0.21	+0.4
3,167,904	-		MIT1002_02854	0.21	+2.2
3,167,989	+		MIT1002_02854	0.26	+0.7
3,168,107	-		MIT1002_02854	0.32	+0.5
3,168,124	-		MIT1002_02854	0.33	+0.1
3,168,187	-		MIT1002_02854	0.36	+0.2
3,168,213	+		MIT1002_02854	0.38	+1.1
3,168,213	+		MIT1002_02854	0.38	-1.9
3,168,213	+		MIT1002_02854	0.38	-0.4
3,168,221	-		MIT1002_02854	0.38	-1.3
3,168,257	+		MIT1002_02854	0.40	-0.1
3,168,289	+		MIT1002_02854	0.42	+0.0
3,168,298	-		MIT1002_02854	0.42	+0.1
3,168,299	+		MIT1002_02854	0.42	-1.3
3,168,299	+		MIT1002_02854	0.42	+0.1
3,168,376	+		MIT1002_02854	0.46	-0.7
3,168,384	-		MIT1002_02854	0.47	+0.0
3,168,384	-		MIT1002_02854	0.47	+1.2
3,168,467	+		MIT1002_02854	0.51	-0.1
3,168,467	+		MIT1002_02854	0.51	+0.1
3,168,467	+		MIT1002_02854	0.51	+0.1
3,168,475	-		MIT1002_02854	0.51	-0.4
3,168,475	-		MIT1002_02854	0.51	+0.1