Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01786

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
1,985,274	-		MIT1002_01785	0.54	-0.5
1,985,299	+		MIT1002_01785	0.56	-0.4
1,985,307	-		MIT1002_01785	0.56	+1.1
1,985,475	+		MIT1002_01785	0.67	-0.8
1,985,531	-		MIT1002_01785	0.70	+1.2
1,985,721	+		MIT1002_01785	0.82	-2.0
1,985,721	+		MIT1002_01785	0.82	+0.1
1,985,728	+		MIT1002_01785	0.83	+0.5
1,985,728	+		MIT1002_01785	0.83	-0.3
1,985,728	+		MIT1002_01785	0.83	-0.5
1,985,729	-		MIT1002_01785	0.83	-0.4
1,985,729	-		MIT1002_01785	0.83	+0.6
1,985,736	-		MIT1002_01785	0.83	+1.2
1,985,736	-		MIT1002_01785	0.83	-1.2
1,985,845	+		MIT1002_01785	0.90	-0.6
1,985,845	+		MIT1002_01785	0.90	-0.1
1,985,848	-				+0.8
1,985,881	+				+0.9
1,985,970	-				-0.2
1,985,977	+				+0.8
1,986,042	+				-0.2
1,986,050	-				-0.4
1,986,127	-				+0.5
1,986,197	-				-1.0
1,986,200	+				-0.7
1,986,317	-				+0.3
1,986,325	+				-1.3
1,986,339	+				+0.2
1,986,360	+				+0.8
1,986,539	-		MIT1002_01786	0.12	-0.4
1,986,556	+		MIT1002_01786	0.13	+2.2
1,986,587	+		MIT1002_01786	0.15	-1.0
1,986,632	-		MIT1002_01786	0.17	+2.2
1,986,730	-		MIT1002_01786	0.21	+0.0
1,986,736	+		MIT1002_01786	0.21	-2.7
1,986,744	-		MIT1002_01786	0.22	-1.2
1,986,744	-		MIT1002_01786	0.22	-0.1
1,986,744	-		MIT1002_01786	0.22	+0.8
1,986,744	-		MIT1002_01786	0.22	-0.4
1,986,744	-		MIT1002_01786	0.22	-1.4
1,986,744	-		MIT1002_01786	0.22	+0.6
1,986,822	+		MIT1002_01786	0.25	+1.1
1,986,915	+		MIT1002_01786	0.30	-2.7
1,986,931	-		MIT1002_01786	0.30	-1.4
1,987,064	+		MIT1002_01786	0.37	+1.0
1,987,072	-		MIT1002_01786	0.37	+0.1
1,987,128	-		MIT1002_01786	0.40	-0.2
1,987,241	-		MIT1002_01786	0.45	-0.7
1,987,265	-		MIT1002_01786	0.46	+0.1
1,987,299	-		MIT1002_01786	0.47	+0.0
1,987,300	+		MIT1002_01786	0.47	-2.0
1,987,484	+		MIT1002_01786	0.56	+1.5
1,987,492	-		MIT1002_01786	0.56	+0.4
1,987,550	+		MIT1002_01786	0.59	+0.5
1,987,550	+		MIT1002_01786	0.59	+0.5
1,987,558	-		MIT1002_01786	0.59	+2.8
1,987,558	-		MIT1002_01786	0.59	-0.4
1,987,558	-		MIT1002_01786	0.59	+0.0
1,987,558	-		MIT1002_01786	0.59	-0.5
1,987,560	+		MIT1002_01786	0.60	+0.5
1,987,562	+		MIT1002_01786	0.60	+1.1
1,987,570	-		MIT1002_01786	0.60	+0.2
1,987,570	-		MIT1002_01786	0.60	+0.3
1,987,573	+		MIT1002_01786	0.60	+0.3
1,987,607	-		MIT1002_01786	0.62	-2.6
1,987,612	+		MIT1002_01786	0.62	-0.0
1,987,684	+		MIT1002_01786	0.65	+0.5
1,987,684	+		MIT1002_01786	0.65	-0.4
1,987,692	-		MIT1002_01786	0.66	-0.5
1,987,726	+		MIT1002_01786	0.67	+0.5
1,987,825	+		MIT1002_01786	0.72	+1.4
1,987,859	+		MIT1002_01786	0.73	+0.5
1,988,003	+		MIT1002_01786	0.80	+0.2
1,988,009	-		MIT1002_01786	0.80	-2.0
1,988,030	-		MIT1002_01786	0.81	+1.3
1,988,037	-		MIT1002_01786	0.82	+0.3
1,988,073	-		MIT1002_01786	0.83	+1.0
1,988,090	+		MIT1002_01786	0.84	+0.3
1,988,105	+		MIT1002_01786	0.85	-0.4
1,988,133	-		MIT1002_01786	0.86	-1.1
1,988,191	+		MIT1002_01786	0.89	+0.8
1,988,193	+		MIT1002_01786	0.89	-0.5
1,988,277	-				-3.0
1,988,377	-				-0.5
1,988,386	+				+0.1
1,988,399	-				-0.3
1,988,404	-				+0.7
1,988,423	-				+0.4
1,988,423	-				-2.8
1,988,467	+				+0.3
1,988,555	+		MIT1002_01787	0.20	-1.9
1,988,563	-		MIT1002_01787	0.22	-1.0
1,988,563	-		MIT1002_01787	0.22	+1.1
1,988,567	+		MIT1002_01787	0.23	-0.1
1,988,567	+		MIT1002_01787	0.23	-0.8
1,988,575	-		MIT1002_01787	0.24	+1.7
1,988,575	-		MIT1002_01787	0.24	-0.1
1,988,592	+		MIT1002_01787	0.27	+1.4
1,988,593	+		MIT1002_01787	0.28	-0.9
1,988,615	+		MIT1002_01787	0.32	-0.2
1,988,615	+		MIT1002_01787	0.32	-0.0
1,988,719	+		MIT1002_01787	0.51	-0.8
1,988,724	+		MIT1002_01787	0.52	+0.2
1,988,727	+		MIT1002_01787	0.53	+0.3
1,988,727	-		MIT1002_01787	0.53	-0.1
1,988,727	-		MIT1002_01787	0.53	+0.9
1,988,732	-		MIT1002_01787	0.53	+0.8
1,988,732	-		MIT1002_01787	0.53	-2.4
1,988,744	+		MIT1002_01787	0.56	+1.0
1,988,757	-		MIT1002_01787	0.58	-1.0
1,988,763	+		MIT1002_01787	0.59	-2.2
1,988,771	+		MIT1002_01787	0.61	+0.9
1,988,791	+		MIT1002_01787	0.64	-2.0
1,988,791	+		MIT1002_01787	0.64	-0.2
1,988,827	-		MIT1002_01787	0.71	-0.5
1,988,831	+		MIT1002_01787	0.72	-0.2
1,988,845	-		MIT1002_01787	0.74	+1.0
1,988,852	-		MIT1002_01787	0.76	+0.0
1,988,853	-		MIT1002_01787	0.76	-0.0
1,988,872	+		MIT1002_01787	0.80	-2.5
1,988,893	-		MIT1002_01787	0.83	-0.4
1,989,055	+				-0.1
1,989,078	+				+0.3
1,989,116	+				+0.1
1,989,117	+				+1.0
1,989,209	+		MIT1002_01788	0.15	+1.3
1,989,228	+		MIT1002_01788	0.16	-0.4
1,989,399	-		MIT1002_01788	0.27	-0.4
1,989,409	-		MIT1002_01788	0.28	+0.4
1,989,417	+		MIT1002_01788	0.29	+1.4
1,989,425	+		MIT1002_01788	0.29	-0.5
1,989,427	+		MIT1002_01788	0.29	+0.7