Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01621

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
1,785,331	+		MIT1002_01620	0.13	-0.3
1,785,348	+		MIT1002_01620	0.15	+0.9
1,785,393	-		MIT1002_01620	0.19	-1.1
1,785,394	+		MIT1002_01620	0.19	-0.6
1,785,420	-		MIT1002_01620	0.21	+0.2
1,785,508	-		MIT1002_01620	0.29	-1.2
1,785,516	-		MIT1002_01620	0.29	-0.6
1,785,532	+		MIT1002_01620	0.31	+1.4
1,785,540	-		MIT1002_01620	0.31	-0.2
1,785,540	-		MIT1002_01620	0.31	-0.0
1,785,540	-		MIT1002_01620	0.31	+2.3
1,785,568	+		MIT1002_01620	0.34	-0.6
1,785,626	-		MIT1002_01620	0.39	-1.2
1,785,697	+		MIT1002_01620	0.45	+1.4
1,785,705	-		MIT1002_01620	0.46	+0.8
1,785,705	-		MIT1002_01620	0.46	+0.0
1,785,734	+		MIT1002_01620	0.48	+0.2
1,785,742	+		MIT1002_01620	0.49	-3.3
1,785,744	+		MIT1002_01620	0.49	+0.2
1,785,754	-		MIT1002_01620	0.50	-0.6
1,785,754	-		MIT1002_01620	0.50	-0.3
1,785,754	-		MIT1002_01620	0.50	+0.6
1,785,755	-		MIT1002_01620	0.50	+0.2
1,785,815	+		MIT1002_01620	0.56	+0.7
1,785,965	-		MIT1002_01620	0.69	+0.4
1,785,968	+		MIT1002_01620	0.69	-0.7
1,786,095	-		MIT1002_01620	0.80	-1.2
1,786,191	+		MIT1002_01620	0.89	+2.2
1,786,191	+		MIT1002_01620	0.89	-1.1
1,786,199	-		MIT1002_01620	0.89	+1.2
1,786,199	-		MIT1002_01620	0.89	-0.3
1,786,199	-		MIT1002_01620	0.89	-0.3
1,786,290	-				-0.6
1,786,439	+				-0.4
1,786,515	-		MIT1002_01621	0.14	+0.2
1,786,593	+		MIT1002_01621	0.20	-0.5
1,786,728	-		MIT1002_01621	0.30	-2.0
1,786,827	-		MIT1002_01621	0.38	-1.2
1,786,854	-		MIT1002_01621	0.40	+1.4
1,786,934	+		MIT1002_01621	0.46	+0.1
1,786,971	-		MIT1002_01621	0.49	-2.2
1,787,044	-		MIT1002_01621	0.54	+0.2
1,787,101	+		MIT1002_01621	0.58	+0.7
1,787,209	-		MIT1002_01621	0.66	-1.6
1,787,308	+		MIT1002_01621	0.74	-0.9
1,787,311	-		MIT1002_01621	0.74	-0.4
1,787,359	-		MIT1002_01621	0.78	+0.5
1,787,434	+		MIT1002_01621	0.83	-1.2
1,787,460	+		MIT1002_01621	0.85	-4.3
1,787,536	+				+0.7
1,787,554	+				-0.1
1,787,678	-				-1.9
1,787,701	+				-0.1
1,787,761	+				-0.2
1,787,763	+				+0.0
1,787,776	+		MIT1002_01622	0.11	+0.1
1,787,776	+		MIT1002_01622	0.11	+0.7
1,787,776	+		MIT1002_01622	0.11	-0.1
1,787,776	+		MIT1002_01622	0.11	-0.5
1,787,784	-		MIT1002_01622	0.12	+0.2
1,787,909	+		MIT1002_01622	0.23	+0.1
1,787,956	-		MIT1002_01622	0.27	+0.3
1,787,963	-		MIT1002_01622	0.28	+0.7
1,787,963	-		MIT1002_01622	0.28	-0.8
1,787,963	-		MIT1002_01622	0.28	+0.8
1,788,023	-		MIT1002_01622	0.33	-0.2
1,788,055	-		MIT1002_01622	0.36	+0.6
1,788,101	+		MIT1002_01622	0.40	-1.5
1,788,109	-		MIT1002_01622	0.41	+0.4
1,788,179	-		MIT1002_01622	0.47	+2.2
1,788,296	+		MIT1002_01622	0.58	-0.4
1,788,304	-		MIT1002_01622	0.59	-0.1
1,788,304	-		MIT1002_01622	0.59	+0.2
1,788,304	-		MIT1002_01622	0.59	-1.0
1,788,315	+		MIT1002_01622	0.60	-0.1
1,788,323	-		MIT1002_01622	0.60	+2.4
1,788,376	+		MIT1002_01622	0.65	-0.8
1,788,376	+		MIT1002_01622	0.65	-0.6
1,788,440	+		MIT1002_01622	0.71	-2.7
1,788,440	+		MIT1002_01622	0.71	-0.1
1,788,440	+		MIT1002_01622	0.71	+1.3
1,788,448	-		MIT1002_01622	0.72	+0.1
1,788,474	+		MIT1002_01622	0.74	-0.9
1,788,482	-		MIT1002_01622	0.75	+0.3
1,788,490	-		MIT1002_01622	0.75	+0.4
1,788,490	-		MIT1002_01622	0.75	-2.0
1,788,500	+		MIT1002_01622	0.76	+0.4
1,788,500	+		MIT1002_01622	0.76	-1.4
1,788,500	+		MIT1002_01622	0.76	+0.2
1,788,503	-		MIT1002_01622	0.76	-1.1
1,788,508	-		MIT1002_01622	0.77	+0.6
1,788,508	-		MIT1002_01622	0.77	+0.2
1,788,512	-		MIT1002_01622	0.77	+0.2
1,788,569	+		MIT1002_01622	0.82	-0.4
1,788,582	+		MIT1002_01622	0.84	+0.8
1,788,582	+		MIT1002_01622	0.84	-0.6
1,788,587	+		MIT1002_01622	0.84	+1.1
1,788,590	-		MIT1002_01622	0.84	+1.1
1,788,590	-		MIT1002_01622	0.84	-0.2
1,788,613	+		MIT1002_01622	0.86	-1.2
1,788,639	+		MIT1002_01622	0.89	-0.3