Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00358 and MIT1002_00359 overlap by 4 nucleotides MIT1002_00359 and MIT1002_00360 overlap by 8 nucleotides
MIT1002_00358: MIT1002_00358 - hypothetical protein, at 385,504 to 387,405
_00358
MIT1002_00359: MIT1002_00359 - hypothetical protein, at 387,402 to 388,331
_00359
MIT1002_00360: MIT1002_00360 - trans-aconitate 2-methyltransferase, at 388,324 to 389,388
_00360
Position (kb) 387
388
389 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 386.461 kb on + strand, within MIT1002_00358 at 386.469 kb on - strand, within MIT1002_00358 at 386.472 kb on + strand, within MIT1002_00358 at 386.480 kb on - strand, within MIT1002_00358 at 386.538 kb on + strand, within MIT1002_00358 at 386.550 kb on - strand, within MIT1002_00358 at 386.576 kb on + strand, within MIT1002_00358 at 386.579 kb on - strand, within MIT1002_00358 at 386.579 kb on - strand, within MIT1002_00358 at 386.599 kb on + strand, within MIT1002_00358 at 386.599 kb on + strand, within MIT1002_00358 at 386.599 kb on + strand, within MIT1002_00358 at 386.599 kb on + strand, within MIT1002_00358 at 386.607 kb on - strand, within MIT1002_00358 at 386.607 kb on - strand, within MIT1002_00358 at 386.757 kb on - strand, within MIT1002_00358 at 386.878 kb on - strand, within MIT1002_00358 at 386.919 kb on - strand, within MIT1002_00358 at 387.003 kb on - strand, within MIT1002_00358 at 387.015 kb on + strand, within MIT1002_00358 at 387.114 kb on - strand, within MIT1002_00358 at 387.288 kb on + strand at 387.288 kb on + strand at 387.461 kb on + strand at 387.498 kb on + strand, within MIT1002_00359 at 387.513 kb on - strand, within MIT1002_00359 at 387.515 kb on + strand, within MIT1002_00359 at 387.517 kb on + strand, within MIT1002_00359 at 387.517 kb on + strand, within MIT1002_00359 at 387.525 kb on - strand, within MIT1002_00359 at 387.539 kb on + strand, within MIT1002_00359 at 387.549 kb on + strand, within MIT1002_00359 at 387.549 kb on - strand, within MIT1002_00359 at 387.551 kb on + strand, within MIT1002_00359 at 387.551 kb on + strand, within MIT1002_00359 at 387.551 kb on + strand, within MIT1002_00359 at 387.551 kb on + strand, within MIT1002_00359 at 387.559 kb on - strand, within MIT1002_00359 at 387.559 kb on - strand, within MIT1002_00359 at 387.559 kb on - strand, within MIT1002_00359 at 387.559 kb on - strand, within MIT1002_00359 at 387.586 kb on + strand, within MIT1002_00359 at 387.594 kb on - strand, within MIT1002_00359 at 387.594 kb on - strand, within MIT1002_00359 at 387.594 kb on - strand, within MIT1002_00359 at 387.594 kb on - strand, within MIT1002_00359 at 387.598 kb on + strand, within MIT1002_00359 at 387.598 kb on + strand, within MIT1002_00359 at 387.605 kb on + strand, within MIT1002_00359 at 387.605 kb on + strand, within MIT1002_00359 at 387.613 kb on - strand, within MIT1002_00359 at 387.613 kb on - strand, within MIT1002_00359 at 387.621 kb on - strand, within MIT1002_00359 at 387.628 kb on + strand, within MIT1002_00359 at 387.658 kb on - strand, within MIT1002_00359 at 387.694 kb on + strand, within MIT1002_00359 at 387.745 kb on + strand, within MIT1002_00359 at 387.753 kb on - strand, within MIT1002_00359 at 387.759 kb on - strand, within MIT1002_00359 at 387.763 kb on - strand, within MIT1002_00359 at 387.768 kb on + strand, within MIT1002_00359 at 387.786 kb on - strand, within MIT1002_00359 at 387.796 kb on - strand, within MIT1002_00359 at 387.851 kb on - strand, within MIT1002_00359 at 387.874 kb on - strand, within MIT1002_00359 at 387.952 kb on + strand, within MIT1002_00359 at 388.112 kb on + strand, within MIT1002_00359 at 388.137 kb on - strand, within MIT1002_00359 at 388.238 kb on + strand, within MIT1002_00359 at 388.238 kb on + strand, within MIT1002_00359 at 388.251 kb on - strand at 388.320 kb on - strand at 388.320 kb on - strand at 388.959 kb on - strand, within MIT1002_00360 at 389.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1 remove 386,461 + MIT1002_00358 0.50 -0.8 386,469 - MIT1002_00358 0.51 +0.7 386,472 + MIT1002_00358 0.51 -5.3 386,480 - MIT1002_00358 0.51 -0.2 386,538 + MIT1002_00358 0.54 -1.1 386,550 - MIT1002_00358 0.55 -0.5 386,576 + MIT1002_00358 0.56 -0.4 386,579 - MIT1002_00358 0.57 +0.2 386,579 - MIT1002_00358 0.57 +1.0 386,599 + MIT1002_00358 0.58 -2.1 386,599 + MIT1002_00358 0.58 -0.5 386,599 + MIT1002_00358 0.58 -1.7 386,599 + MIT1002_00358 0.58 -0.3 386,607 - MIT1002_00358 0.58 -0.6 386,607 - MIT1002_00358 0.58 +0.1 386,757 - MIT1002_00358 0.66 -0.7 386,878 - MIT1002_00358 0.72 +0.3 386,919 - MIT1002_00358 0.74 +0.3 387,003 - MIT1002_00358 0.79 +1.2 387,015 + MIT1002_00358 0.79 -1.8 387,114 - MIT1002_00358 0.85 -0.7 387,288 + -0.8 387,288 + -0.3 387,461 + -0.0 387,498 + MIT1002_00359 0.10 -0.5 387,513 - MIT1002_00359 0.12 -0.9 387,515 + MIT1002_00359 0.12 -0.7 387,517 + MIT1002_00359 0.12 -2.9 387,517 + MIT1002_00359 0.12 -0.3 387,525 - MIT1002_00359 0.13 +0.8 387,539 + MIT1002_00359 0.15 +0.5 387,549 + MIT1002_00359 0.16 +0.5 387,549 - MIT1002_00359 0.16 +1.5 387,551 + MIT1002_00359 0.16 +0.0 387,551 + MIT1002_00359 0.16 -0.4 387,551 + MIT1002_00359 0.16 +0.0 387,551 + MIT1002_00359 0.16 -1.4 387,559 - MIT1002_00359 0.17 +0.7 387,559 - MIT1002_00359 0.17 +1.1 387,559 - MIT1002_00359 0.17 -1.4 387,559 - MIT1002_00359 0.17 -0.6 387,586 + MIT1002_00359 0.20 -0.8 387,594 - MIT1002_00359 0.21 -0.8 387,594 - MIT1002_00359 0.21 -1.1 387,594 - MIT1002_00359 0.21 +1.0 387,594 - MIT1002_00359 0.21 +2.0 387,598 + MIT1002_00359 0.21 -0.4 387,598 + MIT1002_00359 0.21 +0.1 387,605 + MIT1002_00359 0.22 -0.1 387,605 + MIT1002_00359 0.22 +0.3 387,613 - MIT1002_00359 0.23 -0.3 387,613 - MIT1002_00359 0.23 -0.1 387,621 - MIT1002_00359 0.24 -0.3 387,628 + MIT1002_00359 0.24 -1.8 387,658 - MIT1002_00359 0.28 -1.7 387,694 + MIT1002_00359 0.31 -3.4 387,745 + MIT1002_00359 0.37 +0.5 387,753 - MIT1002_00359 0.38 -1.2 387,759 - MIT1002_00359 0.38 +2.9 387,763 - MIT1002_00359 0.39 -1.1 387,768 + MIT1002_00359 0.39 +0.2 387,786 - MIT1002_00359 0.41 +0.3 387,796 - MIT1002_00359 0.42 +0.8 387,851 - MIT1002_00359 0.48 +0.2 387,874 - MIT1002_00359 0.51 -1.5 387,952 + MIT1002_00359 0.59 +0.4 388,112 + MIT1002_00359 0.76 +0.6 388,137 - MIT1002_00359 0.79 +0.0 388,238 + MIT1002_00359 0.90 -0.1 388,238 + MIT1002_00359 0.90 -0.2 388,251 - -1.2 388,320 - +0.4 388,320 - +1.1 388,959 - MIT1002_00360 0.60 +0.1 389,299 - +0.9
Or see this region's nucleotide sequence