Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00178

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00177 and MIT1002_00178 are separated by 64 nucleotidesMIT1002_00178 and MIT1002_00179 are separated by 203 nucleotides MIT1002_00177: MIT1002_00177 - Heat shock protein 70, at 191,386 to 192,888 _00177 MIT1002_00178: MIT1002_00178 - hypothetical protein, at 192,953 to 193,120 _00178 MIT1002_00179: MIT1002_00179 - Excinuclease ABC subunit A, at 193,324 to 196,155 _00179 Position (kb) 192 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 191.954 kb on + strand, within MIT1002_00177at 191.954 kb on + strand, within MIT1002_00177at 191.954 kb on + strand, within MIT1002_00177at 191.954 kb on + strand, within MIT1002_00177at 191.959 kb on + strand, within MIT1002_00177at 191.962 kb on - strand, within MIT1002_00177at 191.962 kb on - strand, within MIT1002_00177at 191.962 kb on - strand, within MIT1002_00177at 191.962 kb on - strand, within MIT1002_00177at 192.007 kb on + strand, within MIT1002_00177at 192.029 kb on + strand, within MIT1002_00177at 192.031 kb on + strand, within MIT1002_00177at 192.037 kb on - strand, within MIT1002_00177at 192.050 kb on - strand, within MIT1002_00177at 192.050 kb on - strand, within MIT1002_00177at 192.109 kb on + strand, within MIT1002_00177at 192.114 kb on + strand, within MIT1002_00177at 192.169 kb on - strand, within MIT1002_00177at 192.169 kb on - strand, within MIT1002_00177at 192.217 kb on - strand, within MIT1002_00177at 192.219 kb on - strand, within MIT1002_00177at 192.224 kb on - strand, within MIT1002_00177at 192.280 kb on + strand, within MIT1002_00177at 192.355 kb on - strand, within MIT1002_00177at 192.406 kb on + strand, within MIT1002_00177at 192.413 kb on + strand, within MIT1002_00177at 192.414 kb on - strand, within MIT1002_00177at 192.451 kb on + strand, within MIT1002_00177at 192.451 kb on + strand, within MIT1002_00177at 192.452 kb on - strand, within MIT1002_00177at 192.476 kb on - strand, within MIT1002_00177at 192.554 kb on + strand, within MIT1002_00177at 192.591 kb on + strand, within MIT1002_00177at 192.754 kb on + strandat 192.819 kb on - strandat 192.824 kb on - strandat 192.836 kb on - strandat 192.856 kb on + strandat 192.864 kb on - strandat 192.864 kb on - strandat 192.906 kb on + strandat 192.920 kb on - strandat 192.926 kb on - strandat 192.943 kb on - strandat 192.995 kb on + strand, within MIT1002_00178at 193.003 kb on - strand, within MIT1002_00178at 193.007 kb on + strand, within MIT1002_00178at 193.022 kb on - strand, within MIT1002_00178at 193.057 kb on + strand, within MIT1002_00178at 193.070 kb on - strand, within MIT1002_00178at 193.082 kb on - strand, within MIT1002_00178at 193.097 kb on + strand, within MIT1002_00178at 193.241 kb on - strandat 193.330 kb on - strandat 193.394 kb on + strandat 193.411 kb on + strandat 193.411 kb on + strandat 193.414 kb on - strandat 193.439 kb on + strandat 193.458 kb on + strandat 193.466 kb on + strandat 193.474 kb on - strandat 193.476 kb on + strandat 193.476 kb on + strandat 193.484 kb on - strandat 193.484 kb on - strandat 193.484 kb on - strandat 193.513 kb on - strandat 193.534 kb on - strandat 193.538 kb on + strandat 193.546 kb on - strandat 193.546 kb on - strandat 193.548 kb on + strandat 193.556 kb on - strandat 193.599 kb on - strandat 193.658 kb on - strand, within MIT1002_00179at 193.678 kb on + strand, within MIT1002_00179at 193.713 kb on + strand, within MIT1002_00179at 193.713 kb on + strand, within MIT1002_00179at 193.720 kb on + strand, within MIT1002_00179at 193.721 kb on - strand, within MIT1002_00179at 193.721 kb on - strand, within MIT1002_00179at 193.819 kb on - strand, within MIT1002_00179at 193.840 kb on + strand, within MIT1002_00179at 193.884 kb on - strand, within MIT1002_00179at 193.991 kb on + strand, within MIT1002_00179at 194.054 kb on + strand, within MIT1002_00179at 194.115 kb on + strand, within MIT1002_00179at 194.115 kb on + strand, within MIT1002_00179at 194.115 kb on + strand, within MIT1002_00179at 194.115 kb on + strand, within MIT1002_00179at 194.115 kb on + strand, within MIT1002_00179

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
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191,954 + MIT1002_00177 0.38 -1.5
191,954 + MIT1002_00177 0.38 -0.1
191,954 + MIT1002_00177 0.38 -2.3
191,954 + MIT1002_00177 0.38 -1.1
191,959 + MIT1002_00177 0.38 +0.5
191,962 - MIT1002_00177 0.38 +0.7
191,962 - MIT1002_00177 0.38 -1.8
191,962 - MIT1002_00177 0.38 +2.5
191,962 - MIT1002_00177 0.38 -1.1
192,007 + MIT1002_00177 0.41 +1.2
192,029 + MIT1002_00177 0.43 +0.3
192,031 + MIT1002_00177 0.43 -1.2
192,037 - MIT1002_00177 0.43 -1.4
192,050 - MIT1002_00177 0.44 +0.9
192,050 - MIT1002_00177 0.44 -2.0
192,109 + MIT1002_00177 0.48 +0.4
192,114 + MIT1002_00177 0.48 +0.9
192,169 - MIT1002_00177 0.52 -0.0
192,169 - MIT1002_00177 0.52 +0.3
192,217 - MIT1002_00177 0.55 +0.1
192,219 - MIT1002_00177 0.55 +1.4
192,224 - MIT1002_00177 0.56 +0.0
192,280 + MIT1002_00177 0.59 +2.2
192,355 - MIT1002_00177 0.64 -1.0
192,406 + MIT1002_00177 0.68 -0.0
192,413 + MIT1002_00177 0.68 +0.7
192,414 - MIT1002_00177 0.68 +0.8
192,451 + MIT1002_00177 0.71 -2.9
192,451 + MIT1002_00177 0.71 +0.7
192,452 - MIT1002_00177 0.71 +0.2
192,476 - MIT1002_00177 0.73 -1.4
192,554 + MIT1002_00177 0.78 -0.5
192,591 + MIT1002_00177 0.80 -3.1
192,754 + -0.8
192,819 - +1.5
192,824 - +0.2
192,836 - +0.1
192,856 + +0.2
192,864 - -1.0
192,864 - +0.4
192,906 + -0.4
192,920 - +0.8
192,926 - -1.3
192,943 - -1.8
192,995 + MIT1002_00178 0.25 -1.4
193,003 - MIT1002_00178 0.30 -1.7
193,007 + MIT1002_00178 0.32 +0.3
193,022 - MIT1002_00178 0.41 +0.1
193,057 + MIT1002_00178 0.62 -0.0
193,070 - MIT1002_00178 0.70 -0.4
193,082 - MIT1002_00178 0.77 -0.2
193,097 + MIT1002_00178 0.86 +0.7
193,241 - +0.2
193,330 - -0.5
193,394 + +0.8
193,411 + -1.5
193,411 + +0.9
193,414 - +0.8
193,439 + +0.7
193,458 + -0.4
193,466 + -1.2
193,474 - +0.1
193,476 + -0.7
193,476 + +0.6
193,484 - -0.4
193,484 - +0.2
193,484 - +0.4
193,513 - +0.2
193,534 - +0.5
193,538 + +1.2
193,546 - +0.4
193,546 - -2.4
193,548 + -0.5
193,556 - +0.2
193,599 - -0.4
193,658 - MIT1002_00179 0.12 +0.3
193,678 + MIT1002_00179 0.12 -0.0
193,713 + MIT1002_00179 0.14 +1.6
193,713 + MIT1002_00179 0.14 +0.3
193,720 + MIT1002_00179 0.14 +0.8
193,721 - MIT1002_00179 0.14 -1.8
193,721 - MIT1002_00179 0.14 +0.8
193,819 - MIT1002_00179 0.17 -0.5
193,840 + MIT1002_00179 0.18 +0.2
193,884 - MIT1002_00179 0.20 -0.0
193,991 + MIT1002_00179 0.24 +0.2
194,054 + MIT1002_00179 0.26 +0.5
194,115 + MIT1002_00179 0.28 +1.0
194,115 + MIT1002_00179 0.28 -2.1
194,115 + MIT1002_00179 0.28 -0.9
194,115 + MIT1002_00179 0.28 -0.5
194,115 + MIT1002_00179 0.28 -0.7

Or see this region's nucleotide sequence