Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00081

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00079 and MIT1002_00080 are separated by 135 nucleotidesMIT1002_00080 and MIT1002_00081 are separated by 330 nucleotidesMIT1002_00081 and MIT1002_00082 overlap by 4 nucleotides MIT1002_00079: MIT1002_00079 - hypothetical protein, at 85,624 to 86,253 _00079 MIT1002_00080: MIT1002_00080 - hypothetical protein, at 86,389 to 86,637 _00080 MIT1002_00081: MIT1002_00081 - HNH endonuclease, at 86,968 to 87,387 _00081 MIT1002_00082: MIT1002_00082 - hypothetical protein, at 87,384 to 88,580 _00082 Position (kb) 86 87 88Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 85.987 kb on + strand, within MIT1002_00079at 85.997 kb on + strand, within MIT1002_00079at 85.997 kb on + strand, within MIT1002_00079at 86.051 kb on + strand, within MIT1002_00079at 86.051 kb on + strand, within MIT1002_00079at 86.106 kb on + strand, within MIT1002_00079at 86.114 kb on - strand, within MIT1002_00079at 86.120 kb on + strand, within MIT1002_00079at 86.125 kb on + strand, within MIT1002_00079at 86.131 kb on + strand, within MIT1002_00079at 86.131 kb on + strand, within MIT1002_00079at 86.131 kb on + strand, within MIT1002_00079at 86.133 kb on - strand, within MIT1002_00079at 86.133 kb on - strand, within MIT1002_00079at 86.139 kb on - strand, within MIT1002_00079at 86.235 kb on + strandat 86.247 kb on + strandat 86.263 kb on - strandat 86.290 kb on - strandat 86.297 kb on - strandat 86.307 kb on - strandat 86.350 kb on - strandat 86.352 kb on + strandat 86.386 kb on + strandat 86.526 kb on + strand, within MIT1002_00080at 86.606 kb on + strand, within MIT1002_00080at 86.606 kb on + strand, within MIT1002_00080at 86.606 kb on + strand, within MIT1002_00080at 86.614 kb on - strandat 86.638 kb on + strandat 86.638 kb on + strandat 86.651 kb on - strandat 86.745 kb on + strandat 86.747 kb on - strandat 86.773 kb on + strandat 86.781 kb on - strandat 86.795 kb on + strandat 86.836 kb on + strandat 86.844 kb on - strandat 86.894 kb on + strandat 86.938 kb on - strandat 86.961 kb on - strandat 86.966 kb on + strandat 86.966 kb on + strandat 86.966 kb on + strandat 86.966 kb on + strandat 86.966 kb on + strandat 86.966 kb on + strandat 86.974 kb on - strandat 86.974 kb on - strandat 86.986 kb on - strandat 86.986 kb on - strandat 87.026 kb on + strand, within MIT1002_00081at 87.047 kb on + strand, within MIT1002_00081at 87.049 kb on + strand, within MIT1002_00081at 87.056 kb on - strand, within MIT1002_00081at 87.238 kb on - strand, within MIT1002_00081at 87.243 kb on - strand, within MIT1002_00081at 87.337 kb on - strand, within MIT1002_00081at 87.375 kb on + strandat 87.431 kb on - strandat 87.476 kb on - strandat 87.564 kb on + strand, within MIT1002_00082at 87.580 kb on - strand, within MIT1002_00082at 87.588 kb on - strand, within MIT1002_00082at 87.589 kb on + strand, within MIT1002_00082at 87.597 kb on - strand, within MIT1002_00082at 87.598 kb on - strand, within MIT1002_00082at 87.658 kb on + strand, within MIT1002_00082at 87.674 kb on - strand, within MIT1002_00082at 87.682 kb on - strand, within MIT1002_00082at 87.709 kb on - strand, within MIT1002_00082at 87.715 kb on - strand, within MIT1002_00082at 87.717 kb on + strand, within MIT1002_00082at 87.717 kb on + strand, within MIT1002_00082at 87.723 kb on + strand, within MIT1002_00082at 87.732 kb on + strand, within MIT1002_00082at 87.746 kb on - strand, within MIT1002_00082at 87.772 kb on - strand, within MIT1002_00082at 87.774 kb on + strand, within MIT1002_00082at 87.800 kb on + strand, within MIT1002_00082at 87.856 kb on + strand, within MIT1002_00082at 87.858 kb on + strand, within MIT1002_00082at 87.858 kb on + strand, within MIT1002_00082at 87.861 kb on + strand, within MIT1002_00082at 87.861 kb on + strand, within MIT1002_00082at 87.866 kb on - strand, within MIT1002_00082at 87.868 kb on + strand, within MIT1002_00082at 87.928 kb on + strand, within MIT1002_00082at 87.955 kb on - strand, within MIT1002_00082at 87.994 kb on - strand, within MIT1002_00082at 88.060 kb on + strand, within MIT1002_00082at 88.060 kb on + strand, within MIT1002_00082at 88.085 kb on - strand, within MIT1002_00082at 88.108 kb on - strand, within MIT1002_00082at 88.144 kb on + strand, within MIT1002_00082at 88.152 kb on - strand, within MIT1002_00082at 88.195 kb on - strand, within MIT1002_00082at 88.274 kb on + strand, within MIT1002_00082at 88.274 kb on + strand, within MIT1002_00082at 88.274 kb on + strand, within MIT1002_00082at 88.282 kb on - strand, within MIT1002_00082at 88.290 kb on - strand, within MIT1002_00082

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 1
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85,987 + MIT1002_00079 0.58 -0.7
85,997 + MIT1002_00079 0.59 +1.1
85,997 + MIT1002_00079 0.59 +1.1
86,051 + MIT1002_00079 0.68 +0.3
86,051 + MIT1002_00079 0.68 +0.8
86,106 + MIT1002_00079 0.77 +1.7
86,114 - MIT1002_00079 0.78 -0.7
86,120 + MIT1002_00079 0.79 -0.3
86,125 + MIT1002_00079 0.80 +0.3
86,131 + MIT1002_00079 0.80 -0.3
86,131 + MIT1002_00079 0.80 +1.1
86,131 + MIT1002_00079 0.80 +0.7
86,133 - MIT1002_00079 0.81 -1.3
86,133 - MIT1002_00079 0.81 -1.1
86,139 - MIT1002_00079 0.82 +0.1
86,235 + +0.1
86,247 + -0.8
86,263 - -0.4
86,290 - -0.1
86,297 - -0.2
86,307 - -1.0
86,350 - -0.1
86,352 + +0.4
86,386 + +0.3
86,526 + MIT1002_00080 0.55 +0.7
86,606 + MIT1002_00080 0.87 -0.0
86,606 + MIT1002_00080 0.87 -1.0
86,606 + MIT1002_00080 0.87 +0.6
86,614 - -0.1
86,638 + -3.7
86,638 + -1.9
86,651 - +0.1
86,745 + -0.5
86,747 - -0.9
86,773 + -0.0
86,781 - -1.0
86,795 + -0.1
86,836 + +1.6
86,844 - +0.5
86,894 + -0.6
86,938 - +0.5
86,961 - -1.1
86,966 + -0.8
86,966 + +0.6
86,966 + -1.1
86,966 + +0.3
86,966 + +1.0
86,966 + -0.9
86,974 - +0.4
86,974 - -0.6
86,986 - +0.3
86,986 - +0.3
87,026 + MIT1002_00081 0.14 +0.1
87,047 + MIT1002_00081 0.19 -0.4
87,049 + MIT1002_00081 0.19 +0.1
87,056 - MIT1002_00081 0.21 -2.8
87,238 - MIT1002_00081 0.64 -0.6
87,243 - MIT1002_00081 0.65 -0.5
87,337 - MIT1002_00081 0.88 +0.1
87,375 + -0.5
87,431 - +1.0
87,476 - -2.3
87,564 + MIT1002_00082 0.15 -0.9
87,580 - MIT1002_00082 0.16 -0.5
87,588 - MIT1002_00082 0.17 +1.5
87,589 + MIT1002_00082 0.17 +3.8
87,597 - MIT1002_00082 0.18 +0.2
87,598 - MIT1002_00082 0.18 -0.3
87,658 + MIT1002_00082 0.23 -0.0
87,674 - MIT1002_00082 0.24 -0.6
87,682 - MIT1002_00082 0.25 -0.8
87,709 - MIT1002_00082 0.27 -1.3
87,715 - MIT1002_00082 0.28 +0.8
87,717 + MIT1002_00082 0.28 +0.3
87,717 + MIT1002_00082 0.28 -0.8
87,723 + MIT1002_00082 0.28 -4.1
87,732 + MIT1002_00082 0.29 +0.2
87,746 - MIT1002_00082 0.30 +0.1
87,772 - MIT1002_00082 0.32 -0.3
87,774 + MIT1002_00082 0.33 -1.6
87,800 + MIT1002_00082 0.35 +0.1
87,856 + MIT1002_00082 0.39 +0.0
87,858 + MIT1002_00082 0.40 +1.3
87,858 + MIT1002_00082 0.40 -0.1
87,861 + MIT1002_00082 0.40 -0.2
87,861 + MIT1002_00082 0.40 +0.3
87,866 - MIT1002_00082 0.40 -1.1
87,868 + MIT1002_00082 0.40 -0.4
87,928 + MIT1002_00082 0.45 +0.5
87,955 - MIT1002_00082 0.48 +0.5
87,994 - MIT1002_00082 0.51 +0.0
88,060 + MIT1002_00082 0.56 +0.3
88,060 + MIT1002_00082 0.56 +0.3
88,085 - MIT1002_00082 0.59 +0.4
88,108 - MIT1002_00082 0.60 -0.3
88,144 + MIT1002_00082 0.63 -1.3
88,152 - MIT1002_00082 0.64 +2.0
88,195 - MIT1002_00082 0.68 -1.3
88,274 + MIT1002_00082 0.74 -2.1
88,274 + MIT1002_00082 0.74 -0.3
88,274 + MIT1002_00082 0.74 +0.5
88,282 - MIT1002_00082 0.75 -0.4
88,290 - MIT1002_00082 0.76 -1.7

Or see this region's nucleotide sequence