Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36665

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36655 and QEN71_RS36660 are separated by 141 nucleotidesQEN71_RS36660 and QEN71_RS36665 are separated by 64 nucleotidesQEN71_RS36665 and QEN71_RS36670 are separated by 38 nucleotides QEN71_RS36655: QEN71_RS36655 - cysteine synthase A, at 1,606,934 to 1,607,908 _RS36655 QEN71_RS36660: QEN71_RS36660 - DeoR/GlpR family DNA-binding transcription regulator, at 1,608,050 to 1,608,820 _RS36660 QEN71_RS36665: QEN71_RS36665 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 1,608,885 to 1,609,883 _RS36665 QEN71_RS36670: QEN71_RS36670 - four-carbon acid sugar kinase family protein, at 1,609,922 to 1,611,181 _RS36670 Position (kb) 1608 1609 1610Strain fitness (log2 ratio) -1 0 1 2at 1607.900 kb on + strandat 1607.900 kb on + strandat 1607.963 kb on + strandat 1607.963 kb on + strandat 1608.204 kb on - strand, within QEN71_RS36660at 1608.452 kb on - strand, within QEN71_RS36660at 1608.452 kb on - strand, within QEN71_RS36660at 1608.530 kb on + strand, within QEN71_RS36660at 1608.853 kb on + strandat 1608.853 kb on + strandat 1608.854 kb on - strandat 1608.865 kb on + strandat 1608.866 kb on - strandat 1609.901 kb on - strandat 1609.901 kb on - strandat 1609.901 kb on - strandat 1609.978 kb on - strandat 1610.288 kb on + strand, within QEN71_RS36670at 1610.660 kb on - strand, within QEN71_RS36670at 1610.660 kb on - strand, within QEN71_RS36670at 1610.663 kb on + strand, within QEN71_RS36670at 1610.663 kb on + strand, within QEN71_RS36670at 1610.664 kb on - strand, within QEN71_RS36670at 1610.664 kb on - strand, within QEN71_RS36670at 1610.664 kb on - strand, within QEN71_RS36670

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,607,900 + +0.3
1,607,900 + +1.6
1,607,963 + +0.3
1,607,963 + +0.5
1,608,204 - QEN71_RS36660 0.20 +0.4
1,608,452 - QEN71_RS36660 0.52 +2.4
1,608,452 - QEN71_RS36660 0.52 +0.4
1,608,530 + QEN71_RS36660 0.62 +0.6
1,608,853 + -0.3
1,608,853 + -0.8
1,608,854 - +0.3
1,608,865 + +0.6
1,608,866 - -0.6
1,609,901 - +0.0
1,609,901 - -0.4
1,609,901 - -0.8
1,609,978 - -0.7
1,610,288 + QEN71_RS36670 0.29 -0.0
1,610,660 - QEN71_RS36670 0.59 -1.3
1,610,660 - QEN71_RS36670 0.59 +0.4
1,610,663 + QEN71_RS36670 0.59 +0.1
1,610,663 + QEN71_RS36670 0.59 +1.2
1,610,664 - QEN71_RS36670 0.59 -0.9
1,610,664 - QEN71_RS36670 0.59 +0.3
1,610,664 - QEN71_RS36670 0.59 -1.5

Or see this region's nucleotide sequence