Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29020

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29010 and QEN71_RS29015 are separated by 73 nucleotidesQEN71_RS29015 and QEN71_RS29020 are separated by 69 nucleotidesQEN71_RS29020 and QEN71_RS29025 are separated by 12 nucleotides QEN71_RS29010: QEN71_RS29010 - chemotaxis protein CheA, at 6,430,684 to 6,432,999 _RS29010 QEN71_RS29015: QEN71_RS29015 - response regulator, at 6,433,073 to 6,433,435 _RS29015 QEN71_RS29020: QEN71_RS29020 - flagellar motor protein MotB, at 6,433,505 to 6,434,617 _RS29020 QEN71_RS29025: QEN71_RS29025 - flagellar motor stator protein MotA, at 6,434,630 to 6,435,490 _RS29025 Position (kb) 6433 6434 6435Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.505 kb on + strand, within QEN71_RS29010at 6432.506 kb on - strand, within QEN71_RS29010at 6432.506 kb on - strand, within QEN71_RS29010at 6432.506 kb on - strand, within QEN71_RS29010at 6432.506 kb on - strand, within QEN71_RS29010at 6432.975 kb on - strandat 6433.029 kb on + strandat 6433.029 kb on + strandat 6433.029 kb on + strandat 6433.030 kb on - strandat 6433.030 kb on - strandat 6433.030 kb on - strandat 6433.045 kb on - strandat 6433.357 kb on - strand, within QEN71_RS29015at 6433.664 kb on - strand, within QEN71_RS29020at 6433.664 kb on - strand, within QEN71_RS29020at 6433.935 kb on + strand, within QEN71_RS29020at 6433.935 kb on + strand, within QEN71_RS29020at 6433.935 kb on + strand, within QEN71_RS29020at 6433.935 kb on + strand, within QEN71_RS29020at 6433.956 kb on + strand, within QEN71_RS29020at 6433.957 kb on - strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.046 kb on + strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.047 kb on - strand, within QEN71_RS29020at 6434.095 kb on + strand, within QEN71_RS29020at 6434.436 kb on + strand, within QEN71_RS29020at 6434.436 kb on + strand, within QEN71_RS29020at 6434.437 kb on - strand, within QEN71_RS29020at 6434.437 kb on - strand, within QEN71_RS29020at 6434.529 kb on + strandat 6434.530 kb on - strandat 6434.631 kb on + strandat 6434.631 kb on + strandat 6434.631 kb on + strandat 6434.631 kb on + strandat 6434.631 kb on + strandat 6434.631 kb on + strandat 6434.632 kb on - strandat 6434.632 kb on - strandat 6434.632 kb on - strandat 6434.632 kb on - strandat 6434.632 kb on - strandat 6434.841 kb on + strand, within QEN71_RS29025at 6434.841 kb on + strand, within QEN71_RS29025at 6434.842 kb on - strand, within QEN71_RS29025at 6435.105 kb on + strand, within QEN71_RS29025at 6435.105 kb on + strand, within QEN71_RS29025at 6435.105 kb on + strand, within QEN71_RS29025at 6435.105 kb on + strand, within QEN71_RS29025at 6435.105 kb on + strand, within QEN71_RS29025at 6435.105 kb on + strand, within QEN71_RS29025at 6435.105 kb on + strand, within QEN71_RS29025at 6435.106 kb on - strand, within QEN71_RS29025at 6435.106 kb on - strand, within QEN71_RS29025at 6435.106 kb on - strand, within QEN71_RS29025at 6435.106 kb on - strand, within QEN71_RS29025at 6435.106 kb on - strand, within QEN71_RS29025at 6435.106 kb on - strand, within QEN71_RS29025at 6435.153 kb on + strand, within QEN71_RS29025at 6435.243 kb on + strand, within QEN71_RS29025at 6435.243 kb on + strand, within QEN71_RS29025at 6435.243 kb on + strand, within QEN71_RS29025at 6435.243 kb on + strand, within QEN71_RS29025at 6435.243 kb on + strand, within QEN71_RS29025at 6435.243 kb on + strand, within QEN71_RS29025at 6435.243 kb on + strand, within QEN71_RS29025at 6435.244 kb on - strand, within QEN71_RS29025at 6435.244 kb on - strand, within QEN71_RS29025at 6435.244 kb on - strand, within QEN71_RS29025at 6435.244 kb on - strand, within QEN71_RS29025at 6435.244 kb on - strand, within QEN71_RS29025at 6435.244 kb on - strand, within QEN71_RS29025at 6435.244 kb on - strand, within QEN71_RS29025at 6435.267 kb on + strand, within QEN71_RS29025at 6435.267 kb on + strand, within QEN71_RS29025at 6435.267 kb on + strand, within QEN71_RS29025at 6435.267 kb on + strand, within QEN71_RS29025at 6435.267 kb on + strand, within QEN71_RS29025at 6435.267 kb on + strand, within QEN71_RS29025at 6435.267 kb on + strand, within QEN71_RS29025at 6435.267 kb on + strand, within QEN71_RS29025at 6435.267 kb on + strand, within QEN71_RS29025at 6435.268 kb on - strand, within QEN71_RS29025at 6435.268 kb on - strand, within QEN71_RS29025at 6435.268 kb on - strand, within QEN71_RS29025at 6435.268 kb on - strand, within QEN71_RS29025at 6435.268 kb on - strand, within QEN71_RS29025at 6435.268 kb on - strand, within QEN71_RS29025at 6435.268 kb on - strand, within QEN71_RS29025at 6435.268 kb on - strand, within QEN71_RS29025at 6435.268 kb on - strand, within QEN71_RS29025at 6435.268 kb on - strand, within QEN71_RS29025at 6435.282 kb on + strand, within QEN71_RS29025at 6435.282 kb on + strand, within QEN71_RS29025at 6435.282 kb on + strand, within QEN71_RS29025at 6435.282 kb on + strand, within QEN71_RS29025at 6435.282 kb on + strand, within QEN71_RS29025at 6435.282 kb on + strand, within QEN71_RS29025at 6435.282 kb on + strand, within QEN71_RS29025at 6435.282 kb on + strand, within QEN71_RS29025at 6435.282 kb on + strand, within QEN71_RS29025at 6435.282 kb on + strand, within QEN71_RS29025at 6435.283 kb on - strand, within QEN71_RS29025at 6435.283 kb on - strand, within QEN71_RS29025at 6435.283 kb on - strand, within QEN71_RS29025at 6435.283 kb on - strand, within QEN71_RS29025at 6435.283 kb on - strand, within QEN71_RS29025at 6435.283 kb on - strand, within QEN71_RS29025at 6435.438 kb on + strandat 6435.438 kb on + strandat 6435.438 kb on + strandat 6435.439 kb on - strandat 6435.439 kb on - strandat 6435.439 kb on - strandat 6435.463 kb on + strandat 6435.464 kb on - strandat 6435.464 kb on - strandat 6435.464 kb on - strandat 6435.505 kb on + strandat 6435.505 kb on + strandat 6435.506 kb on - strandat 6435.506 kb on - strandat 6435.506 kb on - strandat 6435.506 kb on - strandat 6435.528 kb on + strandat 6435.528 kb on + strandat 6435.528 kb on + strandat 6435.529 kb on - strandat 6435.529 kb on - strandat 6435.529 kb on - strandat 6435.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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6,432,505 + QEN71_RS29010 0.79 -0.3
6,432,505 + QEN71_RS29010 0.79 -0.3
6,432,505 + QEN71_RS29010 0.79 -1.9
6,432,505 + QEN71_RS29010 0.79 -2.8
6,432,505 + QEN71_RS29010 0.79 -1.7
6,432,505 + QEN71_RS29010 0.79 -0.5
6,432,505 + QEN71_RS29010 0.79 -1.7
6,432,505 + QEN71_RS29010 0.79 -1.7
6,432,505 + QEN71_RS29010 0.79 -2.6
6,432,506 - QEN71_RS29010 0.79 -3.5
6,432,506 - QEN71_RS29010 0.79 -1.3
6,432,506 - QEN71_RS29010 0.79 -2.2
6,432,506 - QEN71_RS29010 0.79 -0.9
6,432,975 - -3.2
6,433,029 + +0.7
6,433,029 + -0.8
6,433,029 + -0.6
6,433,030 - +0.4
6,433,030 - +0.3
6,433,030 - -0.9
6,433,045 - -0.5
6,433,357 - QEN71_RS29015 0.78 -0.6
6,433,664 - QEN71_RS29020 0.14 +0.1
6,433,664 - QEN71_RS29020 0.14 -0.2
6,433,935 + QEN71_RS29020 0.39 +1.5
6,433,935 + QEN71_RS29020 0.39 +0.6
6,433,935 + QEN71_RS29020 0.39 +0.6
6,433,935 + QEN71_RS29020 0.39 -1.5
6,433,956 + QEN71_RS29020 0.41 +2.4
6,433,957 - QEN71_RS29020 0.41 -1.0
6,434,046 + QEN71_RS29020 0.49 -1.1
6,434,046 + QEN71_RS29020 0.49 -0.3
6,434,046 + QEN71_RS29020 0.49 +0.6
6,434,046 + QEN71_RS29020 0.49 +0.2
6,434,046 + QEN71_RS29020 0.49 -1.1
6,434,046 + QEN71_RS29020 0.49 +0.3
6,434,046 + QEN71_RS29020 0.49 +1.3
6,434,046 + QEN71_RS29020 0.49 +0.7
6,434,046 + QEN71_RS29020 0.49 +0.1
6,434,046 + QEN71_RS29020 0.49 +0.7
6,434,046 + QEN71_RS29020 0.49 +0.5
6,434,047 - QEN71_RS29020 0.49 +0.4
6,434,047 - QEN71_RS29020 0.49 +0.2
6,434,047 - QEN71_RS29020 0.49 +1.6
6,434,047 - QEN71_RS29020 0.49 +0.7
6,434,047 - QEN71_RS29020 0.49 +0.7
6,434,047 - QEN71_RS29020 0.49 +0.3
6,434,047 - QEN71_RS29020 0.49 -0.6
6,434,047 - QEN71_RS29020 0.49 +0.8
6,434,047 - QEN71_RS29020 0.49 +1.4
6,434,047 - QEN71_RS29020 0.49 -0.9
6,434,047 - QEN71_RS29020 0.49 -0.1
6,434,047 - QEN71_RS29020 0.49 +0.4
6,434,095 + QEN71_RS29020 0.53 +0.2
6,434,436 + QEN71_RS29020 0.84 +0.5
6,434,436 + QEN71_RS29020 0.84 +0.3
6,434,437 - QEN71_RS29020 0.84 -0.3
6,434,437 - QEN71_RS29020 0.84 -0.4
6,434,529 + +1.1
6,434,530 - +0.8
6,434,631 + -0.6
6,434,631 + +0.3
6,434,631 + +1.2
6,434,631 + +0.6
6,434,631 + +0.5
6,434,631 + +1.0
6,434,632 - +0.6
6,434,632 - -0.4
6,434,632 - -0.3
6,434,632 - +1.0
6,434,632 - +0.4
6,434,841 + QEN71_RS29025 0.25 -0.0
6,434,841 + QEN71_RS29025 0.25 +0.3
6,434,842 - QEN71_RS29025 0.25 +0.5
6,435,105 + QEN71_RS29025 0.55 +0.0
6,435,105 + QEN71_RS29025 0.55 +0.1
6,435,105 + QEN71_RS29025 0.55 +0.6
6,435,105 + QEN71_RS29025 0.55 +0.3
6,435,105 + QEN71_RS29025 0.55 +0.4
6,435,105 + QEN71_RS29025 0.55 -0.1
6,435,105 + QEN71_RS29025 0.55 +2.7
6,435,106 - QEN71_RS29025 0.55 +0.6
6,435,106 - QEN71_RS29025 0.55 -0.4
6,435,106 - QEN71_RS29025 0.55 -0.6
6,435,106 - QEN71_RS29025 0.55 +0.6
6,435,106 - QEN71_RS29025 0.55 +0.2
6,435,106 - QEN71_RS29025 0.55 +2.4
6,435,153 + QEN71_RS29025 0.61 +0.1
6,435,243 + QEN71_RS29025 0.71 +0.3
6,435,243 + QEN71_RS29025 0.71 +1.1
6,435,243 + QEN71_RS29025 0.71 -0.9
6,435,243 + QEN71_RS29025 0.71 +0.9
6,435,243 + QEN71_RS29025 0.71 -0.3
6,435,243 + QEN71_RS29025 0.71 +0.4
6,435,243 + QEN71_RS29025 0.71 +0.8
6,435,244 - QEN71_RS29025 0.71 +1.0
6,435,244 - QEN71_RS29025 0.71 +0.3
6,435,244 - QEN71_RS29025 0.71 +0.3
6,435,244 - QEN71_RS29025 0.71 +0.7
6,435,244 - QEN71_RS29025 0.71 +0.6
6,435,244 - QEN71_RS29025 0.71 +0.7
6,435,244 - QEN71_RS29025 0.71 +0.7
6,435,267 + QEN71_RS29025 0.74 +1.0
6,435,267 + QEN71_RS29025 0.74 +0.6
6,435,267 + QEN71_RS29025 0.74 +0.6
6,435,267 + QEN71_RS29025 0.74 +1.1
6,435,267 + QEN71_RS29025 0.74 -0.4
6,435,267 + QEN71_RS29025 0.74 +0.6
6,435,267 + QEN71_RS29025 0.74 +1.4
6,435,267 + QEN71_RS29025 0.74 -0.1
6,435,267 + QEN71_RS29025 0.74 +0.1
6,435,268 - QEN71_RS29025 0.74 +0.9
6,435,268 - QEN71_RS29025 0.74 +0.4
6,435,268 - QEN71_RS29025 0.74 +1.0
6,435,268 - QEN71_RS29025 0.74 +0.4
6,435,268 - QEN71_RS29025 0.74 +0.2
6,435,268 - QEN71_RS29025 0.74 -0.6
6,435,268 - QEN71_RS29025 0.74 +2.6
6,435,268 - QEN71_RS29025 0.74 +1.0
6,435,268 - QEN71_RS29025 0.74 +0.4
6,435,268 - QEN71_RS29025 0.74 -0.2
6,435,282 + QEN71_RS29025 0.76 +0.3
6,435,282 + QEN71_RS29025 0.76 -1.3
6,435,282 + QEN71_RS29025 0.76 -0.1
6,435,282 + QEN71_RS29025 0.76 -0.3
6,435,282 + QEN71_RS29025 0.76 +0.1
6,435,282 + QEN71_RS29025 0.76 +0.7
6,435,282 + QEN71_RS29025 0.76 -1.7
6,435,282 + QEN71_RS29025 0.76 +0.1
6,435,282 + QEN71_RS29025 0.76 -0.3
6,435,282 + QEN71_RS29025 0.76 -0.0
6,435,283 - QEN71_RS29025 0.76 -0.7
6,435,283 - QEN71_RS29025 0.76 +0.9
6,435,283 - QEN71_RS29025 0.76 -1.5
6,435,283 - QEN71_RS29025 0.76 +0.2
6,435,283 - QEN71_RS29025 0.76 +0.8
6,435,283 - QEN71_RS29025 0.76 +0.4
6,435,438 + +1.2
6,435,438 + +0.6
6,435,438 + +2.7
6,435,439 - -0.0
6,435,439 - +0.1
6,435,439 - +0.9
6,435,463 + -0.3
6,435,464 - +0.2
6,435,464 - +0.3
6,435,464 - +0.6
6,435,505 + +1.5
6,435,505 + -0.2
6,435,506 - -0.8
6,435,506 - -0.4
6,435,506 - +0.0
6,435,506 - +0.5
6,435,528 + +0.1
6,435,528 + -0.8
6,435,528 + +1.6
6,435,529 - -0.3
6,435,529 - -0.9
6,435,529 - -0.1
6,435,529 - +0.1

Or see this region's nucleotide sequence