Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27930

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27925 and QEN71_RS27930 overlap by 4 nucleotidesQEN71_RS27930 and QEN71_RS27935 are separated by 42 nucleotidesQEN71_RS27935 and QEN71_RS27940 are separated by 10 nucleotides QEN71_RS27925: QEN71_RS27925 - thiamine phosphate synthase, at 6,209,526 to 6,210,641 _RS27925 QEN71_RS27930: QEN71_RS27930 - thiazole synthase, at 6,210,638 to 6,211,462 _RS27930 QEN71_RS27935: QEN71_RS27935 - sulfur carrier protein ThiS, at 6,211,505 to 6,211,702 _RS27935 QEN71_RS27940: QEN71_RS27940 - FAD-dependent oxidoreductase, at 6,211,713 to 6,212,861 _RS27940 Position (kb) 6210 6211 6212Strain fitness (log2 ratio) -3 -2 -1 0 1at 6211.703 kb on - strandat 6211.703 kb on - strandat 6211.703 kb on - strandat 6211.703 kb on - strandat 6211.703 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.898 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.399 kb on - strand, within QEN71_RS27940

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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6,211,703 - -0.3
6,211,703 - -1.5
6,211,703 - -0.3
6,211,703 - +0.5
6,211,703 - -0.2
6,211,709 - -0.5
6,211,709 - +1.4
6,211,709 - -2.5
6,211,709 - -1.0
6,211,709 - +0.8
6,211,709 - +0.1
6,211,709 - -0.1
6,211,709 - +0.7
6,211,709 - -0.6
6,211,709 - -0.3
6,211,709 - +0.2
6,211,709 - -0.3
6,211,709 - +0.6
6,211,709 - +0.0
6,211,709 - -1.7
6,211,709 - -0.0
6,211,709 - -0.9
6,211,709 - +0.6
6,211,709 - +0.6
6,211,709 - -0.4
6,211,886 - QEN71_RS27940 0.15 -0.2
6,211,886 - QEN71_RS27940 0.15 -0.5
6,211,886 - QEN71_RS27940 0.15 -0.5
6,211,886 - QEN71_RS27940 0.15 -1.7
6,211,886 - QEN71_RS27940 0.15 -0.5
6,211,886 - QEN71_RS27940 0.15 +0.1
6,211,886 - QEN71_RS27940 0.15 -1.5
6,211,886 - QEN71_RS27940 0.15 -0.9
6,211,886 - QEN71_RS27940 0.15 +0.4
6,211,886 - QEN71_RS27940 0.15 -0.4
6,211,886 - QEN71_RS27940 0.15 -0.6
6,211,886 - QEN71_RS27940 0.15 -1.0
6,211,886 - QEN71_RS27940 0.15 -2.5
6,211,886 - QEN71_RS27940 0.15 -1.1
6,211,886 - QEN71_RS27940 0.15 -0.9
6,211,898 - QEN71_RS27940 0.16 -1.6
6,212,111 - QEN71_RS27940 0.35 -0.2
6,212,111 - QEN71_RS27940 0.35 -1.0
6,212,111 - QEN71_RS27940 0.35 -1.7
6,212,111 - QEN71_RS27940 0.35 -1.8
6,212,111 - QEN71_RS27940 0.35 -0.0
6,212,111 - QEN71_RS27940 0.35 -0.5
6,212,111 - QEN71_RS27940 0.35 +0.2
6,212,111 - QEN71_RS27940 0.35 -2.8
6,212,111 - QEN71_RS27940 0.35 -2.9
6,212,111 - QEN71_RS27940 0.35 -1.0
6,212,111 - QEN71_RS27940 0.35 -0.2
6,212,111 - QEN71_RS27940 0.35 -0.2
6,212,138 - QEN71_RS27940 0.37 -0.8
6,212,138 - QEN71_RS27940 0.37 -1.7
6,212,138 - QEN71_RS27940 0.37 -0.8
6,212,138 - QEN71_RS27940 0.37 -1.5
6,212,138 - QEN71_RS27940 0.37 -1.0
6,212,138 - QEN71_RS27940 0.37 +0.1
6,212,138 - QEN71_RS27940 0.37 -1.5
6,212,138 - QEN71_RS27940 0.37 -1.0
6,212,399 - QEN71_RS27940 0.60 -1.8

Or see this region's nucleotide sequence