Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS25360 and QEN71_RS25365 are separated by 208 nucleotides QEN71_RS25365 and QEN71_RS25370 are separated by 123 nucleotides QEN71_RS25370 and QEN71_RS25375 are separated by 10 nucleotides QEN71_RS25375 and QEN71_RS25380 are separated by 44 nucleotides
QEN71_RS25360: QEN71_RS25360 - urease accessory protein UreD, at 5,641,871 to 5,642,752
_RS25360
QEN71_RS25365: QEN71_RS25365 - transporter substrate-binding domain-containing protein, at 5,642,961 to 5,643,764
_RS25365
QEN71_RS25370: QEN71_RS25370 - urease subunit gamma, at 5,643,888 to 5,644,190
_RS25370
QEN71_RS25375: QEN71_RS25375 - urease subunit beta, at 5,644,201 to 5,644,506
_RS25375
QEN71_RS25380: QEN71_RS25380 - urease subunit alpha, at 5,644,551 to 5,646,257
_RS25380
Position (kb) 5642
5643
5644 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5641.978 kb on + strand, within QEN71_RS25360 at 5641.979 kb on - strand, within QEN71_RS25360 at 5642.030 kb on + strand, within QEN71_RS25360 at 5642.171 kb on + strand, within QEN71_RS25360 at 5642.588 kb on - strand, within QEN71_RS25360 at 5642.772 kb on - strand at 5642.772 kb on - strand at 5642.802 kb on + strand at 5642.803 kb on - strand at 5642.872 kb on + strand at 5642.872 kb on + strand at 5642.901 kb on - strand at 5643.114 kb on + strand, within QEN71_RS25365 at 5643.159 kb on + strand, within QEN71_RS25365 at 5643.160 kb on - strand, within QEN71_RS25365 at 5643.160 kb on - strand, within QEN71_RS25365 at 5643.246 kb on + strand, within QEN71_RS25365 at 5643.246 kb on + strand, within QEN71_RS25365 at 5643.247 kb on - strand, within QEN71_RS25365 at 5643.247 kb on - strand, within QEN71_RS25365 at 5643.343 kb on - strand, within QEN71_RS25365 at 5643.343 kb on - strand, within QEN71_RS25365 at 5643.343 kb on - strand, within QEN71_RS25365 at 5643.345 kb on + strand, within QEN71_RS25365 at 5643.345 kb on + strand, within QEN71_RS25365 at 5643.345 kb on + strand, within QEN71_RS25365 at 5643.346 kb on - strand, within QEN71_RS25365 at 5643.346 kb on - strand, within QEN71_RS25365 at 5643.346 kb on - strand, within QEN71_RS25365 at 5643.837 kb on + strand at 5643.837 kb on + strand at 5643.981 kb on + strand, within QEN71_RS25370 at 5643.981 kb on + strand, within QEN71_RS25370 at 5643.982 kb on - strand, within QEN71_RS25370 at 5643.982 kb on - strand, within QEN71_RS25370 at 5644.063 kb on - strand, within QEN71_RS25370 at 5644.093 kb on + strand, within QEN71_RS25370 at 5644.094 kb on - strand, within QEN71_RS25370 at 5644.094 kb on - strand, within QEN71_RS25370 at 5644.318 kb on + strand, within QEN71_RS25375 at 5644.318 kb on + strand, within QEN71_RS25375 at 5644.319 kb on - strand, within QEN71_RS25375 at 5644.327 kb on + strand, within QEN71_RS25375 at 5644.472 kb on - strand, within QEN71_RS25375 at 5644.558 kb on + strand at 5644.558 kb on + strand at 5644.558 kb on + strand at 5644.558 kb on + strand at 5644.579 kb on - strand at 5644.660 kb on - strand at 5644.669 kb on - strand at 5644.705 kb on + strand at 5644.706 kb on - strand at 5644.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 5,641,978 + QEN71_RS25360 0.12 +0.6 5,641,979 - QEN71_RS25360 0.12 -1.1 5,642,030 + QEN71_RS25360 0.18 +1.7 5,642,171 + QEN71_RS25360 0.34 +1.4 5,642,588 - QEN71_RS25360 0.81 +0.4 5,642,772 - -0.1 5,642,772 - -1.3 5,642,802 + +0.5 5,642,803 - +0.2 5,642,872 + -1.5 5,642,872 + -0.1 5,642,901 - -1.6 5,643,114 + QEN71_RS25365 0.19 +0.5 5,643,159 + QEN71_RS25365 0.25 -0.8 5,643,160 - QEN71_RS25365 0.25 +0.5 5,643,160 - QEN71_RS25365 0.25 -1.2 5,643,246 + QEN71_RS25365 0.35 +0.1 5,643,246 + QEN71_RS25365 0.35 +0.3 5,643,247 - QEN71_RS25365 0.36 -1.2 5,643,247 - QEN71_RS25365 0.36 -0.9 5,643,343 - QEN71_RS25365 0.48 -0.6 5,643,343 - QEN71_RS25365 0.48 +0.6 5,643,343 - QEN71_RS25365 0.48 +1.1 5,643,345 + QEN71_RS25365 0.48 -0.3 5,643,345 + QEN71_RS25365 0.48 +0.3 5,643,345 + QEN71_RS25365 0.48 +0.0 5,643,346 - QEN71_RS25365 0.48 -0.9 5,643,346 - QEN71_RS25365 0.48 -0.4 5,643,346 - QEN71_RS25365 0.48 -1.6 5,643,837 + +1.1 5,643,837 + -0.4 5,643,981 + QEN71_RS25370 0.31 -1.3 5,643,981 + QEN71_RS25370 0.31 -0.3 5,643,982 - QEN71_RS25370 0.31 +1.4 5,643,982 - QEN71_RS25370 0.31 +0.9 5,644,063 - QEN71_RS25370 0.58 -1.1 5,644,093 + QEN71_RS25370 0.68 +0.1 5,644,094 - QEN71_RS25370 0.68 +1.0 5,644,094 - QEN71_RS25370 0.68 -3.2 5,644,318 + QEN71_RS25375 0.38 +1.0 5,644,318 + QEN71_RS25375 0.38 -0.3 5,644,319 - QEN71_RS25375 0.39 -1.3 5,644,327 + QEN71_RS25375 0.41 -0.3 5,644,472 - QEN71_RS25375 0.89 +0.1 5,644,558 + +0.5 5,644,558 + +0.9 5,644,558 + +0.7 5,644,558 + -0.0 5,644,579 - +1.7 5,644,660 - -0.2 5,644,669 - +0.1 5,644,705 + -1.6 5,644,706 - -0.3 5,644,706 - +0.7
Or see this region's nucleotide sequence