Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS17490

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS17485 and QEN71_RS17490 are separated by 8 nucleotidesQEN71_RS17490 and QEN71_RS17495 are separated by 10 nucleotidesQEN71_RS17495 and QEN71_RS17500 are separated by 6 nucleotides QEN71_RS17485: QEN71_RS17485 - pilus assembly protein N-terminal domain-containing protein, at 3,889,612 to 3,890,952 _RS17485 QEN71_RS17490: QEN71_RS17490 - ATPase, T2SS/T4P/T4SS family, at 3,890,961 to 3,892,655 _RS17490 QEN71_RS17495: QEN71_RS17495 - type II secretion system F family protein, at 3,892,666 to 3,893,508 _RS17495 QEN71_RS17500: QEN71_RS17500 - type II secretion system F family protein, at 3,893,515 to 3,894,393 _RS17500 Position (kb) 3890 3891 3892 3893Strain fitness (log2 ratio) -2 -1 0 1 2at 3890.361 kb on - strand, within QEN71_RS17485at 3890.361 kb on - strand, within QEN71_RS17485at 3890.471 kb on - strand, within QEN71_RS17485at 3890.820 kb on + strandat 3890.863 kb on + strandat 3891.120 kb on + strandat 3891.120 kb on + strandat 3891.120 kb on + strandat 3891.328 kb on + strand, within QEN71_RS17490at 3891.329 kb on - strand, within QEN71_RS17490at 3891.365 kb on + strand, within QEN71_RS17490at 3892.044 kb on + strand, within QEN71_RS17490at 3892.044 kb on + strand, within QEN71_RS17490at 3892.044 kb on + strand, within QEN71_RS17490at 3892.044 kb on + strand, within QEN71_RS17490at 3892.045 kb on - strand, within QEN71_RS17490at 3892.100 kb on - strand, within QEN71_RS17490at 3892.579 kb on - strandat 3892.593 kb on + strandat 3892.726 kb on + strandat 3892.726 kb on + strandat 3892.726 kb on + strandat 3892.726 kb on + strandat 3893.171 kb on + strand, within QEN71_RS17495at 3893.266 kb on - strand, within QEN71_RS17495at 3893.470 kb on + strandat 3893.471 kb on - strandat 3893.471 kb on - strandat 3893.507 kb on - strandat 3893.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,890,361 - QEN71_RS17485 0.56 -0.3
3,890,361 - QEN71_RS17485 0.56 -0.1
3,890,471 - QEN71_RS17485 0.64 -1.5
3,890,820 + -0.3
3,890,863 + -0.1
3,891,120 + -0.4
3,891,120 + -0.9
3,891,120 + +0.1
3,891,328 + QEN71_RS17490 0.22 +0.9
3,891,329 - QEN71_RS17490 0.22 +0.5
3,891,365 + QEN71_RS17490 0.24 +0.1
3,892,044 + QEN71_RS17490 0.64 +0.4
3,892,044 + QEN71_RS17490 0.64 +0.7
3,892,044 + QEN71_RS17490 0.64 -0.7
3,892,044 + QEN71_RS17490 0.64 +0.3
3,892,045 - QEN71_RS17490 0.64 -0.8
3,892,100 - QEN71_RS17490 0.67 -0.2
3,892,579 - +0.2
3,892,593 + -1.8
3,892,726 + +1.8
3,892,726 + +0.3
3,892,726 + +0.8
3,892,726 + +0.6
3,893,171 + QEN71_RS17495 0.60 -0.0
3,893,266 - QEN71_RS17495 0.71 +1.0
3,893,470 + -0.8
3,893,471 - -0.1
3,893,471 - -0.2
3,893,507 - -0.5
3,893,523 - +0.6

Or see this region's nucleotide sequence