Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06395

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06390 and QEN71_RS06395 are separated by 183 nucleotidesQEN71_RS06395 and QEN71_RS06400 overlap by 4 nucleotidesQEN71_RS06400 and QEN71_RS06405 are separated by 64 nucleotides QEN71_RS06390: QEN71_RS06390 - hypothetical protein, at 1,417,522 to 1,418,421 _RS06390 QEN71_RS06395: QEN71_RS06395 - NAD-dependent DNA ligase LigA, at 1,418,605 to 1,420,656 _RS06395 QEN71_RS06400: QEN71_RS06400 - peptide deformylase, at 1,420,653 to 1,421,186 _RS06400 QEN71_RS06405: QEN71_RS06405 - pseudouridine synthase, at 1,421,251 to 1,423,449 _RS06405 Position (kb) 1418 1419 1420 1421Strain fitness (log2 ratio) -2 -1 0 1 2at 1417.670 kb on + strand, within QEN71_RS06390at 1417.671 kb on - strand, within QEN71_RS06390at 1417.689 kb on + strand, within QEN71_RS06390at 1417.690 kb on - strand, within QEN71_RS06390at 1417.706 kb on + strand, within QEN71_RS06390at 1417.706 kb on + strand, within QEN71_RS06390at 1417.707 kb on - strand, within QEN71_RS06390at 1417.707 kb on - strand, within QEN71_RS06390at 1417.830 kb on + strand, within QEN71_RS06390at 1417.830 kb on + strand, within QEN71_RS06390at 1417.830 kb on + strand, within QEN71_RS06390at 1417.830 kb on + strand, within QEN71_RS06390at 1417.830 kb on + strand, within QEN71_RS06390at 1417.830 kb on + strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.831 kb on - strand, within QEN71_RS06390at 1417.874 kb on + strand, within QEN71_RS06390at 1417.874 kb on + strand, within QEN71_RS06390at 1417.874 kb on + strand, within QEN71_RS06390at 1417.875 kb on - strand, within QEN71_RS06390at 1417.875 kb on - strand, within QEN71_RS06390at 1417.912 kb on + strand, within QEN71_RS06390at 1417.912 kb on + strand, within QEN71_RS06390at 1417.912 kb on + strand, within QEN71_RS06390at 1417.913 kb on - strand, within QEN71_RS06390at 1417.913 kb on - strand, within QEN71_RS06390at 1417.913 kb on - strand, within QEN71_RS06390at 1418.176 kb on + strand, within QEN71_RS06390at 1418.176 kb on + strand, within QEN71_RS06390at 1418.176 kb on + strand, within QEN71_RS06390at 1418.176 kb on + strand, within QEN71_RS06390at 1418.176 kb on + strand, within QEN71_RS06390at 1418.177 kb on - strand, within QEN71_RS06390at 1418.177 kb on - strand, within QEN71_RS06390at 1418.177 kb on - strand, within QEN71_RS06390at 1418.177 kb on - strand, within QEN71_RS06390at 1418.177 kb on - strand, within QEN71_RS06390at 1418.177 kb on - strand, within QEN71_RS06390at 1418.177 kb on - strand, within QEN71_RS06390at 1418.216 kb on + strand, within QEN71_RS06390at 1418.216 kb on + strand, within QEN71_RS06390at 1418.217 kb on - strand, within QEN71_RS06390at 1418.358 kb on + strandat 1418.359 kb on - strandat 1418.487 kb on + strandat 1418.487 kb on + strandat 1418.488 kb on - strandat 1418.488 kb on - strandat 1418.493 kb on + strandat 1418.493 kb on + strandat 1418.493 kb on + strandat 1418.493 kb on + strandat 1418.494 kb on - strandat 1418.494 kb on - strandat 1418.494 kb on - strandat 1418.494 kb on - strandat 1418.494 kb on - strandat 1418.494 kb on - strandat 1418.494 kb on - strandat 1418.494 kb on - strandat 1418.494 kb on - strandat 1418.565 kb on + strandat 1418.565 kb on + strandat 1418.565 kb on + strandat 1420.629 kb on + strandat 1420.629 kb on + strandat 1420.630 kb on - strandat 1420.848 kb on - strand, within QEN71_RS06400at 1421.001 kb on + strand, within QEN71_RS06400at 1421.103 kb on + strand, within QEN71_RS06400at 1421.104 kb on - strand, within QEN71_RS06400at 1421.114 kb on + strand, within QEN71_RS06400at 1421.115 kb on - strand, within QEN71_RS06400at 1421.115 kb on - strand, within QEN71_RS06400at 1421.115 kb on - strand, within QEN71_RS06400at 1421.141 kb on + strandat 1421.142 kb on - strandat 1421.252 kb on + strandat 1421.252 kb on + strandat 1421.252 kb on + strandat 1421.253 kb on - strandat 1421.276 kb on + strandat 1421.277 kb on - strandat 1421.277 kb on - strandat 1421.543 kb on + strand, within QEN71_RS06405at 1421.544 kb on - strand, within QEN71_RS06405at 1421.561 kb on + strand, within QEN71_RS06405at 1421.561 kb on + strand, within QEN71_RS06405at 1421.561 kb on + strand, within QEN71_RS06405at 1421.562 kb on - strand, within QEN71_RS06405at 1421.562 kb on - strand, within QEN71_RS06405at 1421.562 kb on - strand, within QEN71_RS06405at 1421.562 kb on - strand, within QEN71_RS06405

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,417,670 + QEN71_RS06390 0.16 -1.3
1,417,671 - QEN71_RS06390 0.17 -0.3
1,417,689 + QEN71_RS06390 0.19 -0.3
1,417,690 - QEN71_RS06390 0.19 -0.3
1,417,706 + QEN71_RS06390 0.20 +0.0
1,417,706 + QEN71_RS06390 0.20 +0.2
1,417,707 - QEN71_RS06390 0.21 -0.3
1,417,707 - QEN71_RS06390 0.21 +0.4
1,417,830 + QEN71_RS06390 0.34 +0.1
1,417,830 + QEN71_RS06390 0.34 +0.2
1,417,830 + QEN71_RS06390 0.34 -0.8
1,417,830 + QEN71_RS06390 0.34 -0.9
1,417,830 + QEN71_RS06390 0.34 +0.2
1,417,830 + QEN71_RS06390 0.34 +1.0
1,417,831 - QEN71_RS06390 0.34 -0.5
1,417,831 - QEN71_RS06390 0.34 -0.6
1,417,831 - QEN71_RS06390 0.34 -0.6
1,417,831 - QEN71_RS06390 0.34 -0.4
1,417,831 - QEN71_RS06390 0.34 +0.7
1,417,831 - QEN71_RS06390 0.34 +1.7
1,417,831 - QEN71_RS06390 0.34 +0.1
1,417,831 - QEN71_RS06390 0.34 +0.5
1,417,831 - QEN71_RS06390 0.34 -0.2
1,417,831 - QEN71_RS06390 0.34 +0.5
1,417,831 - QEN71_RS06390 0.34 +0.5
1,417,831 - QEN71_RS06390 0.34 -1.1
1,417,831 - QEN71_RS06390 0.34 +0.0
1,417,831 - QEN71_RS06390 0.34 -0.2
1,417,831 - QEN71_RS06390 0.34 -0.7
1,417,831 - QEN71_RS06390 0.34 -0.6
1,417,831 - QEN71_RS06390 0.34 -1.0
1,417,874 + QEN71_RS06390 0.39 -0.7
1,417,874 + QEN71_RS06390 0.39 +0.2
1,417,874 + QEN71_RS06390 0.39 -0.6
1,417,875 - QEN71_RS06390 0.39 -0.1
1,417,875 - QEN71_RS06390 0.39 -0.4
1,417,912 + QEN71_RS06390 0.43 +0.2
1,417,912 + QEN71_RS06390 0.43 +1.1
1,417,912 + QEN71_RS06390 0.43 +0.0
1,417,913 - QEN71_RS06390 0.43 +0.5
1,417,913 - QEN71_RS06390 0.43 -0.1
1,417,913 - QEN71_RS06390 0.43 +0.3
1,418,176 + QEN71_RS06390 0.73 -0.2
1,418,176 + QEN71_RS06390 0.73 -0.4
1,418,176 + QEN71_RS06390 0.73 +0.5
1,418,176 + QEN71_RS06390 0.73 +0.5
1,418,176 + QEN71_RS06390 0.73 +0.2
1,418,177 - QEN71_RS06390 0.73 +0.9
1,418,177 - QEN71_RS06390 0.73 -0.2
1,418,177 - QEN71_RS06390 0.73 -0.6
1,418,177 - QEN71_RS06390 0.73 +0.1
1,418,177 - QEN71_RS06390 0.73 -0.3
1,418,177 - QEN71_RS06390 0.73 +0.1
1,418,177 - QEN71_RS06390 0.73 -1.2
1,418,216 + QEN71_RS06390 0.77 -1.1
1,418,216 + QEN71_RS06390 0.77 +0.2
1,418,217 - QEN71_RS06390 0.77 -0.3
1,418,358 + -0.1
1,418,359 - -0.8
1,418,487 + +1.3
1,418,487 + -0.3
1,418,488 - +0.2
1,418,488 - +0.7
1,418,493 + -0.4
1,418,493 + +0.6
1,418,493 + -0.2
1,418,493 + -0.1
1,418,494 - -1.6
1,418,494 - +1.2
1,418,494 - -0.4
1,418,494 - -1.4
1,418,494 - +2.2
1,418,494 - -1.8
1,418,494 - -0.8
1,418,494 - -0.9
1,418,494 - -0.0
1,418,565 + -1.0
1,418,565 + +2.1
1,418,565 + +0.9
1,420,629 + -2.0
1,420,629 + -0.3
1,420,630 - -1.5
1,420,848 - QEN71_RS06400 0.37 +0.5
1,421,001 + QEN71_RS06400 0.65 +0.3
1,421,103 + QEN71_RS06400 0.84 -0.7
1,421,104 - QEN71_RS06400 0.84 -0.1
1,421,114 + QEN71_RS06400 0.86 -0.5
1,421,115 - QEN71_RS06400 0.87 +0.2
1,421,115 - QEN71_RS06400 0.87 +1.9
1,421,115 - QEN71_RS06400 0.87 -0.8
1,421,141 + -1.6
1,421,142 - +0.4
1,421,252 + +0.5
1,421,252 + +0.7
1,421,252 + -1.1
1,421,253 - -0.6
1,421,276 + +0.9
1,421,277 - -0.7
1,421,277 - +0.7
1,421,543 + QEN71_RS06405 0.13 -0.1
1,421,544 - QEN71_RS06405 0.13 -0.8
1,421,561 + QEN71_RS06405 0.14 +1.3
1,421,561 + QEN71_RS06405 0.14 +0.0
1,421,561 + QEN71_RS06405 0.14 -1.3
1,421,562 - QEN71_RS06405 0.14 +1.1
1,421,562 - QEN71_RS06405 0.14 -0.3
1,421,562 - QEN71_RS06405 0.14 -0.3
1,421,562 - QEN71_RS06405 0.14 -0.7

Or see this region's nucleotide sequence