Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03305

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03300 and QEN71_RS03305 are separated by 39 nucleotidesQEN71_RS03305 and QEN71_RS03310 are separated by 204 nucleotides QEN71_RS03300: QEN71_RS03300 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 731,502 to 732,623 _RS03300 QEN71_RS03305: QEN71_RS03305 - glutamate-1-semialdehyde 2,1-aminomutase, at 732,663 to 733,943 _RS03305 QEN71_RS03310: QEN71_RS03310 - hypothetical protein, at 734,148 to 734,792 _RS03310 Position (kb) 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1at 732.644 kb on - strandat 732.644 kb on - strandat 734.007 kb on - strandat 734.007 kb on - strandat 734.007 kb on - strandat 734.024 kb on - strandat 734.091 kb on + strandat 734.092 kb on - strandat 734.092 kb on - strandat 734.092 kb on - strandat 734.224 kb on + strand, within QEN71_RS03310at 734.224 kb on + strand, within QEN71_RS03310at 734.224 kb on + strand, within QEN71_RS03310at 734.224 kb on + strand, within QEN71_RS03310at 734.224 kb on + strand, within QEN71_RS03310at 734.224 kb on + strand, within QEN71_RS03310at 734.224 kb on + strand, within QEN71_RS03310at 734.224 kb on + strand, within QEN71_RS03310at 734.224 kb on + strand, within QEN71_RS03310at 734.225 kb on - strand, within QEN71_RS03310at 734.225 kb on - strand, within QEN71_RS03310at 734.225 kb on - strand, within QEN71_RS03310at 734.225 kb on - strand, within QEN71_RS03310at 734.225 kb on - strand, within QEN71_RS03310at 734.225 kb on - strand, within QEN71_RS03310at 734.225 kb on - strand, within QEN71_RS03310at 734.225 kb on - strand, within QEN71_RS03310at 734.225 kb on - strand, within QEN71_RS03310at 734.515 kb on + strand, within QEN71_RS03310at 734.515 kb on + strand, within QEN71_RS03310at 734.515 kb on + strand, within QEN71_RS03310at 734.515 kb on + strand, within QEN71_RS03310at 734.515 kb on + strand, within QEN71_RS03310at 734.515 kb on + strand, within QEN71_RS03310at 734.515 kb on + strand, within QEN71_RS03310at 734.515 kb on + strand, within QEN71_RS03310at 734.516 kb on - strand, within QEN71_RS03310at 734.516 kb on - strand, within QEN71_RS03310at 734.516 kb on - strand, within QEN71_RS03310at 734.516 kb on - strand, within QEN71_RS03310at 734.521 kb on + strand, within QEN71_RS03310at 734.521 kb on + strand, within QEN71_RS03310at 734.522 kb on - strand, within QEN71_RS03310at 734.522 kb on - strand, within QEN71_RS03310at 734.522 kb on - strand, within QEN71_RS03310at 734.578 kb on + strand, within QEN71_RS03310at 734.596 kb on + strand, within QEN71_RS03310at 734.596 kb on + strand, within QEN71_RS03310at 734.596 kb on + strand, within QEN71_RS03310at 734.596 kb on + strand, within QEN71_RS03310at 734.596 kb on + strand, within QEN71_RS03310at 734.596 kb on + strand, within QEN71_RS03310at 734.888 kb on + strandat 734.888 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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732,644 - +0.9
732,644 - +0.3
734,007 - +0.2
734,007 - -1.6
734,007 - +0.1
734,024 - -0.5
734,091 + +0.1
734,092 - -0.4
734,092 - +0.5
734,092 - +1.2
734,224 + QEN71_RS03310 0.12 +1.3
734,224 + QEN71_RS03310 0.12 -1.0
734,224 + QEN71_RS03310 0.12 -0.2
734,224 + QEN71_RS03310 0.12 -2.8
734,224 + QEN71_RS03310 0.12 +0.7
734,224 + QEN71_RS03310 0.12 +0.8
734,224 + QEN71_RS03310 0.12 -1.3
734,224 + QEN71_RS03310 0.12 +0.6
734,224 + QEN71_RS03310 0.12 -0.7
734,225 - QEN71_RS03310 0.12 +0.2
734,225 - QEN71_RS03310 0.12 +0.0
734,225 - QEN71_RS03310 0.12 -0.3
734,225 - QEN71_RS03310 0.12 -1.0
734,225 - QEN71_RS03310 0.12 -0.3
734,225 - QEN71_RS03310 0.12 -0.1
734,225 - QEN71_RS03310 0.12 -1.3
734,225 - QEN71_RS03310 0.12 -0.7
734,225 - QEN71_RS03310 0.12 +0.6
734,515 + QEN71_RS03310 0.57 +0.4
734,515 + QEN71_RS03310 0.57 +0.4
734,515 + QEN71_RS03310 0.57 +1.5
734,515 + QEN71_RS03310 0.57 -0.1
734,515 + QEN71_RS03310 0.57 -0.8
734,515 + QEN71_RS03310 0.57 +0.6
734,515 + QEN71_RS03310 0.57 -0.8
734,515 + QEN71_RS03310 0.57 -0.6
734,516 - QEN71_RS03310 0.57 -2.1
734,516 - QEN71_RS03310 0.57 +0.7
734,516 - QEN71_RS03310 0.57 -0.9
734,516 - QEN71_RS03310 0.57 -1.1
734,521 + QEN71_RS03310 0.58 -0.9
734,521 + QEN71_RS03310 0.58 -0.1
734,522 - QEN71_RS03310 0.58 -0.7
734,522 - QEN71_RS03310 0.58 +0.1
734,522 - QEN71_RS03310 0.58 -0.4
734,578 + QEN71_RS03310 0.67 +0.1
734,596 + QEN71_RS03310 0.69 -0.1
734,596 + QEN71_RS03310 0.69 +0.3
734,596 + QEN71_RS03310 0.69 +0.3
734,596 + QEN71_RS03310 0.69 -1.6
734,596 + QEN71_RS03310 0.69 -0.9
734,596 + QEN71_RS03310 0.69 -0.3
734,888 + +0.1
734,888 + +0.3

Or see this region's nucleotide sequence