Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04092 and MIT1002_04093 are separated by 2 nucleotides MIT1002_04093 and MIT1002_04094 are separated by 57 nucleotides MIT1002_04094 and MIT1002_04095 are separated by 433 nucleotides MIT1002_04095 and MIT1002_04096 are separated by 297 nucleotides
MIT1002_04092: MIT1002_04092 - putative type I restriction enzymeP M protein, at 4,590,799 to 4,592,343
_04092
MIT1002_04093: MIT1002_04093 - Type I restriction modification DNA specificity domain protein, at 4,592,346 to 4,592,945
_04093
MIT1002_04094: MIT1002_04094 - hypothetical protein, at 4,593,003 to 4,593,293
_04094
MIT1002_04095: MIT1002_04095 - hypothetical protein, at 4,593,727 to 4,593,960
_04095
MIT1002_04096: MIT1002_04096 - transcriptional regulator, y4mF family, at 4,594,258 to 4,594,536
_04096
Position (kb) 4593
4594 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4592.027 kb on - strand, within MIT1002_04092 at 4592.027 kb on - strand, within MIT1002_04092 at 4592.064 kb on + strand, within MIT1002_04092 at 4592.072 kb on - strand, within MIT1002_04092 at 4592.148 kb on + strand, within MIT1002_04092 at 4592.171 kb on + strand, within MIT1002_04092 at 4592.181 kb on - strand, within MIT1002_04092 at 4592.226 kb on + strand at 4592.299 kb on - strand at 4592.347 kb on - strand at 4592.356 kb on + strand at 4592.654 kb on + strand, within MIT1002_04093 at 4592.862 kb on - strand, within MIT1002_04093 at 4592.901 kb on + strand at 4592.909 kb on - strand at 4592.909 kb on - strand at 4593.018 kb on - strand at 4593.029 kb on - strand at 4593.095 kb on - strand, within MIT1002_04094 at 4593.111 kb on + strand, within MIT1002_04094 at 4593.118 kb on + strand, within MIT1002_04094 at 4593.135 kb on + strand, within MIT1002_04094 at 4593.199 kb on - strand, within MIT1002_04094 at 4593.200 kb on - strand, within MIT1002_04094 at 4593.354 kb on + strand at 4593.371 kb on - strand at 4593.431 kb on + strand at 4593.431 kb on + strand at 4593.439 kb on - strand at 4593.447 kb on + strand at 4593.528 kb on + strand at 4593.536 kb on - strand at 4593.537 kb on - strand at 4593.612 kb on - strand at 4593.630 kb on + strand at 4593.796 kb on - strand, within MIT1002_04095 at 4593.814 kb on + strand, within MIT1002_04095 at 4593.835 kb on + strand, within MIT1002_04095 at 4593.835 kb on + strand, within MIT1002_04095 at 4593.849 kb on + strand, within MIT1002_04095 at 4593.849 kb on + strand, within MIT1002_04095 at 4594.044 kb on + strand at 4594.049 kb on + strand at 4594.049 kb on + strand at 4594.059 kb on + strand at 4594.112 kb on - strand at 4594.171 kb on + strand at 4594.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1 remove 4,592,027 - MIT1002_04092 0.79 -1.6 4,592,027 - MIT1002_04092 0.79 -3.3 4,592,064 + MIT1002_04092 0.82 -0.8 4,592,072 - MIT1002_04092 0.82 -2.9 4,592,148 + MIT1002_04092 0.87 -1.7 4,592,171 + MIT1002_04092 0.89 -3.4 4,592,181 - MIT1002_04092 0.89 -4.3 4,592,226 + -5.1 4,592,299 - -3.8 4,592,347 - +1.2 4,592,356 + -3.9 4,592,654 + MIT1002_04093 0.51 -2.4 4,592,862 - MIT1002_04093 0.86 -4.3 4,592,901 + -2.7 4,592,909 - -1.8 4,592,909 - -2.2 4,593,018 - -0.0 4,593,029 - -0.9 4,593,095 - MIT1002_04094 0.32 -1.0 4,593,111 + MIT1002_04094 0.37 -1.4 4,593,118 + MIT1002_04094 0.40 +0.1 4,593,135 + MIT1002_04094 0.45 +0.1 4,593,199 - MIT1002_04094 0.67 -0.2 4,593,200 - MIT1002_04094 0.68 -1.3 4,593,354 + -0.8 4,593,371 - -0.2 4,593,431 + +0.1 4,593,431 + -1.2 4,593,439 - +0.3 4,593,447 + -0.0 4,593,528 + -0.1 4,593,536 - +1.1 4,593,537 - -0.4 4,593,612 - +0.7 4,593,630 + +0.2 4,593,796 - MIT1002_04095 0.29 -0.8 4,593,814 + MIT1002_04095 0.37 +0.1 4,593,835 + MIT1002_04095 0.46 +0.2 4,593,835 + MIT1002_04095 0.46 +0.5 4,593,849 + MIT1002_04095 0.52 -0.7 4,593,849 + MIT1002_04095 0.52 -0.1 4,594,044 + +0.3 4,594,049 + -2.6 4,594,049 + +1.3 4,594,059 + +0.6 4,594,112 - +1.1 4,594,171 + -0.2 4,594,179 - -0.3
Or see this region's nucleotide sequence