Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03505

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
3,914,672	-				+0.0
3,914,769	-		MIT1002_03504	0.15	-2.2
3,914,785	+		MIT1002_03504	0.17	-3.4
3,914,785	+		MIT1002_03504	0.17	+0.3
3,914,790	+		MIT1002_03504	0.17	-0.2
3,914,840	-		MIT1002_03504	0.23	-0.7
3,914,840	-		MIT1002_03504	0.23	-0.3
3,914,921	+		MIT1002_03504	0.31	-0.4
3,914,921	+		MIT1002_03504	0.31	+0.5
3,914,958	-		MIT1002_03504	0.35	-1.1
3,914,972	+		MIT1002_03504	0.36	-0.5
3,914,972	+		MIT1002_03504	0.36	+0.2
3,914,972	+		MIT1002_03504	0.36	-0.3
3,914,980	-		MIT1002_03504	0.37	-0.2
3,914,980	-		MIT1002_03504	0.37	-0.6
3,914,982	+		MIT1002_03504	0.37	-0.2
3,914,982	+		MIT1002_03504	0.37	-0.8
3,914,982	-		MIT1002_03504	0.37	+0.9
3,914,982	-		MIT1002_03504	0.37	+1.5
3,914,982	-		MIT1002_03504	0.37	+1.1
3,914,982	-		MIT1002_03504	0.37	-2.0
3,915,059	+		MIT1002_03504	0.45	-0.5
3,915,059	+		MIT1002_03504	0.45	-0.4
3,915,059	+		MIT1002_03504	0.45	-0.5
3,915,059	+		MIT1002_03504	0.45	+0.5
3,915,067	-		MIT1002_03504	0.46	-0.4
3,915,067	-		MIT1002_03504	0.46	-0.0
3,915,105	+		MIT1002_03504	0.50	-1.5
3,915,130	+		MIT1002_03504	0.52	+0.0
3,915,138	+		MIT1002_03504	0.53	-0.2
3,915,146	-		MIT1002_03504	0.54	-0.3
3,915,146	-		MIT1002_03504	0.54	-0.4
3,915,146	-		MIT1002_03504	0.54	+0.9
3,915,174	+		MIT1002_03504	0.57	+1.0
3,915,192	-		MIT1002_03504	0.58	-0.4
3,915,247	+		MIT1002_03504	0.64	-0.1
3,915,254	+		MIT1002_03504	0.65	-1.1
3,915,254	+		MIT1002_03504	0.65	-0.2
3,915,262	-		MIT1002_03504	0.66	-1.5
3,915,262	-		MIT1002_03504	0.66	-0.9
3,915,262	-		MIT1002_03504	0.66	-0.4
3,915,296	+		MIT1002_03504	0.69	-0.8
3,915,296	+		MIT1002_03504	0.69	-0.9
3,915,319	-		MIT1002_03504	0.71	+0.1
3,915,321	+		MIT1002_03504	0.72	-1.5
3,915,329	-		MIT1002_03504	0.72	+0.5
3,915,346	-		MIT1002_03504	0.74	+0.3
3,915,373	-		MIT1002_03504	0.77	-0.3
3,915,374	-		MIT1002_03504	0.77	+0.7
3,915,374	-		MIT1002_03504	0.77	-0.2
3,915,399	+		MIT1002_03504	0.80	-0.2
3,915,421	+		MIT1002_03504	0.82	-0.0
3,915,421	+		MIT1002_03504	0.82	-1.2
3,915,429	-		MIT1002_03504	0.83	-1.3
3,915,429	-		MIT1002_03504	0.83	+0.4
3,915,429	-		MIT1002_03504	0.83	-1.6
3,915,440	-		MIT1002_03504	0.84	-0.4
3,915,460	-		MIT1002_03504	0.86	+0.8
3,915,484	-		MIT1002_03504	0.88	+0.5
3,915,519	-				-0.2
3,915,519	-				-0.9
3,915,555	+				+0.5
3,915,606	-				-0.6
3,915,630	-				+0.8
3,915,757	-		MIT1002_03505	0.18	+0.3
3,915,764	-		MIT1002_03505	0.19	+0.6
3,915,794	+		MIT1002_03505	0.23	+1.9
3,915,794	+		MIT1002_03505	0.23	+1.4
3,915,802	-		MIT1002_03505	0.25	+0.2
3,915,836	-		MIT1002_03505	0.30	+1.5
3,915,842	+		MIT1002_03505	0.30	+0.9
3,915,850	-		MIT1002_03505	0.32	+0.8
3,915,865	+		MIT1002_03505	0.34	+1.0
3,915,873	-		MIT1002_03505	0.35	+1.4
3,915,883	-		MIT1002_03505	0.36	+0.4
3,915,891	+		MIT1002_03505	0.38	+1.3
3,915,891	+		MIT1002_03505	0.38	+1.1
3,915,923	-		MIT1002_03505	0.42	+1.8
3,915,944	-		MIT1002_03505	0.45	+1.5
3,916,011	-		MIT1002_03505	0.55	+1.7
3,916,029	-		MIT1002_03505	0.58	+0.9
3,916,196	-		MIT1002_03505	0.82	+1.0
3,916,198	-		MIT1002_03505	0.82	+1.1
3,916,355	-				-1.6
3,916,499	+				-0.3
3,916,576	+		MIT1002_03506	0.14	+0.4
3,916,576	+		MIT1002_03506	0.14	-0.5
3,916,576	+		MIT1002_03506	0.14	-0.6
3,916,584	-		MIT1002_03506	0.14	+0.8
3,916,673	+		MIT1002_03506	0.19	-2.7
3,916,820	-		MIT1002_03506	0.27	+0.1
3,916,883	+		MIT1002_03506	0.30	+0.8
3,916,893	+		MIT1002_03506	0.31	+0.3
3,916,928	+		MIT1002_03506	0.33	+0.1
3,916,942	-		MIT1002_03506	0.34	-0.8
3,916,993	+		MIT1002_03506	0.36	+1.1
3,916,993	+		MIT1002_03506	0.36	+1.3
3,917,001	-		MIT1002_03506	0.37	+1.6
3,917,081	-		MIT1002_03506	0.41	-1.1
3,917,101	+		MIT1002_03506	0.42	+0.2
3,917,109	-		MIT1002_03506	0.43	+0.1
3,917,144	-		MIT1002_03506	0.45	-0.5
3,917,160	-		MIT1002_03506	0.46	-0.8
3,917,195	-		MIT1002_03506	0.47	-0.1
3,917,263	-		MIT1002_03506	0.51	-0.4