Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03404

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
3,807,695	+				+0.1
3,807,721	-				+1.6
3,807,759	-				+0.2
3,808,788	-				+1.3
3,808,853	-		MIT1002_03404	0.11	+0.1
3,808,877	-		MIT1002_03404	0.13	-0.7
3,808,896	-		MIT1002_03404	0.14	-1.3
3,808,933	-		MIT1002_03404	0.17	-0.4
3,808,935	+		MIT1002_03404	0.17	-1.0
3,808,943	-		MIT1002_03404	0.17	+0.8
3,808,943	-		MIT1002_03404	0.17	-0.6
3,808,943	-		MIT1002_03404	0.17	-0.1
3,809,015	-		MIT1002_03404	0.22	+1.4
3,809,132	+		MIT1002_03404	0.29	+0.0
3,809,152	+		MIT1002_03404	0.31	+0.2
3,809,153	-		MIT1002_03404	0.31	-0.3
3,809,153	-		MIT1002_03404	0.31	+1.1
3,809,153	-		MIT1002_03404	0.31	+0.1
3,809,155	+		MIT1002_03404	0.31	+0.2
3,809,163	-		MIT1002_03404	0.32	+0.0
3,809,168	-		MIT1002_03404	0.32	-0.6
3,809,173	-		MIT1002_03404	0.32	+0.6
3,809,173	-		MIT1002_03404	0.32	+0.7
3,809,187	+		MIT1002_03404	0.33	+0.4
3,809,195	-		MIT1002_03404	0.34	+0.7
3,809,195	-		MIT1002_03404	0.34	+0.3
3,809,208	+		MIT1002_03404	0.34	+1.1
3,809,232	+		MIT1002_03404	0.36	+0.2
3,809,240	-		MIT1002_03404	0.37	+0.6
3,809,243	+		MIT1002_03404	0.37	-1.6
3,809,251	-		MIT1002_03404	0.37	-0.5
3,809,280	+		MIT1002_03404	0.39	+0.2
3,809,288	-		MIT1002_03404	0.40	+0.2
3,809,288	-		MIT1002_03404	0.40	+0.4
3,809,289	-		MIT1002_03404	0.40	-0.6
3,809,484	+		MIT1002_03404	0.52	+0.7
3,809,540	-		MIT1002_03404	0.56	-0.4
3,809,595	+		MIT1002_03404	0.60	-0.2
3,809,622	-		MIT1002_03404	0.61	-1.0
3,809,739	-		MIT1002_03404	0.69	-0.5
3,809,763	+		MIT1002_03404	0.71	-1.4
3,809,776	-		MIT1002_03404	0.71	-0.3
3,809,804	+		MIT1002_03404	0.73	-0.5
3,809,863	+		MIT1002_03404	0.77	-1.0
3,809,868	+		MIT1002_03404	0.77	+0.0
3,809,875	+		MIT1002_03404	0.78	+0.3
3,809,875	+		MIT1002_03404	0.78	-0.2
3,809,893	+		MIT1002_03404	0.79	-1.6
3,809,901	-		MIT1002_03404	0.79	+0.6
3,809,908	-		MIT1002_03404	0.80	-0.0
3,809,936	+		MIT1002_03404	0.82	+1.4
3,809,999	+		MIT1002_03404	0.86	+0.2
3,810,005	+		MIT1002_03404	0.86	+0.1
3,810,005	+		MIT1002_03404	0.86	+0.6
3,810,005	+		MIT1002_03404	0.86	-1.6
3,810,005	+		MIT1002_03404	0.86	-1.3
3,810,013	-		MIT1002_03404	0.87	+0.4
3,810,013	-		MIT1002_03404	0.87	-1.1
3,810,013	-		MIT1002_03404	0.87	-1.6
3,810,023	-		MIT1002_03404	0.87	-1.4
3,810,069	-				+0.5
3,810,118	-				-0.7
3,810,613	-		MIT1002_03405	0.10	+0.4
3,810,673	+		MIT1002_03405	0.34	+0.2
3,810,681	-		MIT1002_03405	0.37	+0.1
3,810,699	+		MIT1002_03405	0.44	-0.9
3,810,708	+		MIT1002_03405	0.47	-0.3
3,810,708	+		MIT1002_03405	0.47	+0.7
3,810,708	+		MIT1002_03405	0.47	+1.1
3,810,708	+		MIT1002_03405	0.47	-1.6
3,810,708	+		MIT1002_03405	0.47	+1.6
3,810,716	-		MIT1002_03405	0.50	+0.0
3,810,716	-		MIT1002_03405	0.50	+0.1
3,810,716	-		MIT1002_03405	0.50	+0.5
3,810,716	-		MIT1002_03405	0.50	-1.0
3,810,716	-		MIT1002_03405	0.50	+1.0
3,810,716	-		MIT1002_03405	0.50	-0.1
3,810,818	-				-0.3
3,810,819	-				+0.6
3,810,918	-				+0.8
3,810,988	-				-0.3
3,810,995	+				-0.2
3,810,998	-				-0.3
3,811,019	+				+0.6
3,811,024	+				-0.6
3,811,026	+				-1.6
3,811,026	+				+0.7
3,811,026	+				-0.0
3,811,034	-				+0.0
3,811,034	-				+0.0
3,811,036	+				-0.3
3,811,036	+				-0.3
3,811,036	+				+0.2
3,811,037	+				-0.1
3,811,037	+				+0.2
3,811,037	+				-0.6
3,811,038	+				+0.9
3,811,044	-				-0.1
3,811,044	-				-0.2
3,811,045	-				+0.5
3,811,045	-				-1.0
3,811,045	-				-0.2
3,811,045	-				+0.4
3,811,053	-				-0.3
3,811,085	-		MIT1002_03406	0.19	+0.1
3,811,097	+		MIT1002_03406	0.23	-0.3
3,811,160	+		MIT1002_03406	0.43	+2.4
3,811,168	-		MIT1002_03406	0.46	+1.1
3,811,216	-		MIT1002_03406	0.61	+0.2