Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03230

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
3,599,480	+				-0.6
3,599,480	+				-1.3
3,599,480	+				-0.4
3,599,488	-				+0.1
3,599,488	-				-0.6
3,599,488	-				-0.2
3,599,595	+				+0.6
3,599,624	+				-0.0
3,599,652	+				-0.4
3,599,709	+				+1.0
3,599,725	+				+2.5
3,599,823	-				+0.3
3,600,010	-				-0.0
3,600,068	+		MIT1002_03229	0.21	-0.1
3,600,068	+		MIT1002_03229	0.21	-1.2
3,600,076	-		MIT1002_03229	0.23	+0.6
3,600,134	+		MIT1002_03229	0.37	+0.9
3,600,241	+		MIT1002_03229	0.64	+0.3
3,600,284	-		MIT1002_03229	0.75	+0.7
3,600,288	-		MIT1002_03229	0.76	+0.7
3,600,327	-		MIT1002_03229	0.86	+1.6
3,600,327	-		MIT1002_03229	0.86	+1.8
3,600,329	-		MIT1002_03229	0.86	-0.6
3,600,329	-		MIT1002_03229	0.86	-3.4
3,600,454	-				-0.2
3,600,468	-				+0.4
3,600,502	+				+0.1
3,600,502	+				+0.4
3,600,502	+				-1.1
3,600,502	+				+1.8
3,600,510	-		MIT1002_03230	0.10	-1.9
3,600,659	-		MIT1002_03230	0.56	+0.1
3,600,681	-		MIT1002_03230	0.63	+2.1
3,600,698	+		MIT1002_03230	0.69	+1.1
3,600,821	+				+1.1
3,600,900	-		MIT1002_03231	0.30	+0.4
3,600,913	+		MIT1002_03231	0.34	-0.1
3,600,953	+		MIT1002_03231	0.45	+1.4
3,600,970	+		MIT1002_03231	0.50	+0.3
3,600,971	+		MIT1002_03231	0.50	-0.3
3,600,994	+		MIT1002_03231	0.57	+3.0
3,601,101	+		MIT1002_03231	0.87	-0.4
3,601,321	+				+0.0
3,601,377	-		MIT1002_03232	0.14	+0.7
3,601,472	-		MIT1002_03232	0.23	+0.5
3,601,487	-		MIT1002_03232	0.24	-0.0
3,601,492	-		MIT1002_03232	0.25	+0.8
3,601,609	+		MIT1002_03232	0.36	-0.6
3,601,612	-		MIT1002_03232	0.36	+0.6
3,601,617	-		MIT1002_03232	0.37	+0.0
3,601,617	-		MIT1002_03232	0.37	-1.5
3,601,633	+		MIT1002_03232	0.38	-0.9
3,601,645	-		MIT1002_03232	0.40	+0.5
3,601,733	-		MIT1002_03232	0.48	+0.6