Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02440

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
2,721,478	+				+0.2
2,721,547	-		MIT1002_02437	0.39	-0.3
2,721,566	-		MIT1002_02437	0.49	+0.2
2,721,566	-		MIT1002_02437	0.49	+1.2
2,721,578	-		MIT1002_02437	0.54	-0.3
2,721,621	+		MIT1002_02437	0.75	+1.4
2,721,629	-		MIT1002_02437	0.79	+1.0
2,721,634	-		MIT1002_02437	0.82	+1.0
2,721,681	+				+0.7
2,721,695	+				+0.8
2,721,710	-		MIT1002_02438	0.15	+0.8
2,721,741	+		MIT1002_02438	0.29	+0.6
2,721,767	-		MIT1002_02438	0.41	-0.3
2,721,893	-				+0.8
2,722,003	+				-2.0
2,722,162	+		MIT1002_02439	0.40	-1.3
2,722,171	+		MIT1002_02439	0.42	-0.3
2,722,174	-		MIT1002_02439	0.43	+0.0
2,722,311	+		MIT1002_02439	0.75	+0.6
2,722,417	-				-0.6
2,722,424	+				-0.4
2,722,436	+				-0.7
2,722,458	+				-0.6
2,722,458	+				-0.2
2,722,466	-				+0.7
2,722,494	+				+1.3
2,722,513	-				+0.0
2,722,538	+		MIT1002_02440	0.12	+0.4
2,722,609	+		MIT1002_02440	0.21	-1.1
2,722,609	+		MIT1002_02440	0.21	-0.6
2,722,672	+		MIT1002_02440	0.28	+0.3
2,722,677	+		MIT1002_02440	0.29	+0.6
2,722,710	+		MIT1002_02440	0.33	-0.5
2,722,728	-		MIT1002_02440	0.35	-0.1
2,722,728	-		MIT1002_02440	0.35	+1.2
2,722,728	-		MIT1002_02440	0.35	+2.4
2,722,733	+		MIT1002_02440	0.36	+0.1
2,722,733	+		MIT1002_02440	0.36	-0.0
2,722,767	+		MIT1002_02440	0.40	+0.2
2,722,775	-		MIT1002_02440	0.41	+0.7
2,722,775	-		MIT1002_02440	0.41	+0.8
2,722,780	-		MIT1002_02440	0.42	-0.6
2,722,856	+		MIT1002_02440	0.52	-0.5
2,722,864	-		MIT1002_02440	0.53	+0.2
2,722,874	+		MIT1002_02440	0.54	+0.6
2,722,874	+		MIT1002_02440	0.54	-0.7
2,722,876	+		MIT1002_02440	0.54	+0.9
2,722,912	+		MIT1002_02440	0.59	+1.4
2,722,932	+		MIT1002_02440	0.61	+0.9
2,722,936	+		MIT1002_02440	0.62	-1.0
2,722,936	+		MIT1002_02440	0.62	-0.6
2,722,937	+		MIT1002_02440	0.62	+0.7
2,722,945	-		MIT1002_02440	0.63	-0.7
2,722,975	-		MIT1002_02440	0.66	-0.2
2,722,979	+		MIT1002_02440	0.67	+0.9
2,722,988	-		MIT1002_02440	0.68	-0.3
2,723,044	-		MIT1002_02440	0.75	-0.2
2,723,044	-		MIT1002_02440	0.75	+1.0
2,723,046	+		MIT1002_02440	0.75	+0.2
2,723,056	-		MIT1002_02440	0.77	+1.3
2,723,089	-		MIT1002_02440	0.81	+0.6
2,723,118	-		MIT1002_02440	0.84	-0.8
2,723,174	+				+2.0
2,723,180	-				+1.0
2,723,220	-				-1.8
2,723,220	-				-0.4
2,723,563	+		MIT1002_02441	0.43	-1.4
2,723,563	+		MIT1002_02441	0.43	+0.5
2,723,568	+		MIT1002_02441	0.44	-0.9
2,723,586	+		MIT1002_02441	0.50	-0.2
2,723,587	+		MIT1002_02441	0.50	-4.1
2,723,601	-		MIT1002_02441	0.55	+0.3
2,723,615	+		MIT1002_02441	0.59	+0.5
2,723,615	+		MIT1002_02441	0.59	-1.3
2,723,615	+		MIT1002_02441	0.59	-0.4
2,723,623	-		MIT1002_02441	0.62	-1.1
2,723,720	+				+0.5
2,723,876	+				-0.7
2,723,876	+				-0.5
2,723,884	-				+0.2
2,723,936	-				+0.0
2,723,957	+				-0.1
2,723,957	+				-1.5
2,723,969	-		MIT1002_02442	0.11	-0.3
2,723,978	+		MIT1002_02442	0.12	-0.7
2,723,984	+		MIT1002_02442	0.12	-0.9
2,723,992	-		MIT1002_02442	0.13	-0.6
2,724,049	+		MIT1002_02442	0.19	+0.2
2,724,055	-		MIT1002_02442	0.19	+0.2
2,724,057	-		MIT1002_02442	0.20	-0.8
2,724,105	+		MIT1002_02442	0.24	-0.2
2,724,113	-		MIT1002_02442	0.25	+0.5
2,724,226	-		MIT1002_02442	0.36	+0.9