Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02222

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
2,481,499	-		MIT1002_02221	0.21	-2.4
2,481,499	-		MIT1002_02221	0.21	+1.2
2,481,589	-		MIT1002_02221	0.33	-1.1
2,481,589	-		MIT1002_02221	0.33	+0.6
2,481,655	+		MIT1002_02221	0.42	-2.8
2,481,674	+		MIT1002_02221	0.44	+0.3
2,481,702	-		MIT1002_02221	0.48	-0.1
2,481,893	+		MIT1002_02221	0.73	-0.5
2,482,205	+				-0.5
2,482,213	-				-0.8
2,482,213	-				+0.3
2,482,213	-				+0.4
2,482,223	-				+0.7
2,482,298	+				-0.5
2,482,308	-				-0.3
2,482,451	-				+0.9
2,482,451	-				+0.8
2,482,451	-				+0.3
2,482,576	+				+0.2
2,482,581	+				-0.5
2,482,589	-				-0.6
2,482,612	+				+0.1
2,482,630	-				-0.4
2,482,632	+				-0.3
2,482,744	-		MIT1002_02222	0.11	+1.0
2,482,753	+		MIT1002_02222	0.11	+0.2
2,482,768	+		MIT1002_02222	0.11	-0.7
2,482,857	+		MIT1002_02222	0.15	-0.8
2,482,857	-		MIT1002_02222	0.15	+0.7
2,482,865	-		MIT1002_02222	0.15	+0.3
2,482,878	+		MIT1002_02222	0.16	+0.5
2,483,009	-		MIT1002_02222	0.21	-0.1
2,483,009	-		MIT1002_02222	0.21	-2.0
2,483,081	-		MIT1002_02222	0.24	-2.1
2,483,096	+		MIT1002_02222	0.25	+0.6
2,483,102	-		MIT1002_02222	0.25	-1.3
2,483,132	-		MIT1002_02222	0.26	-0.3
2,483,259	+		MIT1002_02222	0.31	+0.5
2,483,261	+		MIT1002_02222	0.32	+0.7
2,483,289	+		MIT1002_02222	0.33	-0.4
2,483,303	-		MIT1002_02222	0.33	+0.7
2,483,309	-		MIT1002_02222	0.33	-1.3
2,483,323	+		MIT1002_02222	0.34	+0.2
2,483,329	+		MIT1002_02222	0.34	-0.4
2,483,379	+		MIT1002_02222	0.36	-2.8
2,483,394	+		MIT1002_02222	0.37	+0.3
2,483,488	-		MIT1002_02222	0.41	-1.6
2,483,488	-		MIT1002_02222	0.41	-1.7
2,483,504	+		MIT1002_02222	0.41	+0.9
2,483,512	-		MIT1002_02222	0.42	-1.4
2,483,574	-		MIT1002_02222	0.44	-0.4
2,483,583	-		MIT1002_02222	0.45	-1.2
2,483,611	+		MIT1002_02222	0.46	-2.1
2,483,611	+		MIT1002_02222	0.46	-0.9
2,483,611	+		MIT1002_02222	0.46	+1.4
2,483,611	+		MIT1002_02222	0.46	-1.8
2,483,611	+		MIT1002_02222	0.46	+0.4
2,483,611	+		MIT1002_02222	0.46	+0.2
2,483,619	-		MIT1002_02222	0.46	+0.0
2,483,619	-		MIT1002_02222	0.46	-1.9
2,483,619	-		MIT1002_02222	0.46	-0.1
2,483,619	-		MIT1002_02222	0.46	-1.0
2,483,619	-		MIT1002_02222	0.46	-0.3
2,483,702	+		MIT1002_02222	0.49	+0.1
2,483,702	+		MIT1002_02222	0.49	+0.3
2,483,703	+		MIT1002_02222	0.49	-1.0
2,483,744	+		MIT1002_02222	0.51	+0.3
2,483,773	+		MIT1002_02222	0.52	+0.5
2,483,773	+		MIT1002_02222	0.52	+0.2
2,483,781	-		MIT1002_02222	0.53	-1.6
2,483,783	+		MIT1002_02222	0.53	-0.5
2,483,783	+		MIT1002_02222	0.53	+0.2
2,483,793	-		MIT1002_02222	0.53	-1.1
2,483,797	+		MIT1002_02222	0.53	+1.6
2,483,797	+		MIT1002_02222	0.53	-0.2
2,483,797	+		MIT1002_02222	0.53	-1.2
2,483,797	+		MIT1002_02222	0.53	-0.1
2,483,797	+		MIT1002_02222	0.53	-0.7
2,483,797	+		MIT1002_02222	0.53	+0.8
2,483,797	+		MIT1002_02222	0.53	-2.8
2,483,797	+		MIT1002_02222	0.53	-0.5
2,483,797	+		MIT1002_02222	0.53	-0.4
2,483,797	+		MIT1002_02222	0.53	-0.3
2,483,797	+		MIT1002_02222	0.53	-1.2
2,483,803	+		MIT1002_02222	0.54	-0.4
2,483,805	-		MIT1002_02222	0.54	-0.8
2,483,805	-		MIT1002_02222	0.54	+1.4
2,483,805	-		MIT1002_02222	0.54	+0.1
2,483,805	-		MIT1002_02222	0.54	+0.7
2,483,892	+		MIT1002_02222	0.57	+0.8
2,483,953	+		MIT1002_02222	0.60	-0.5
2,483,955	+		MIT1002_02222	0.60	+1.0
2,483,959	-		MIT1002_02222	0.60	-0.7
2,483,987	+		MIT1002_02222	0.61	-0.2
2,483,988	+		MIT1002_02222	0.61	+0.1
2,483,988	-		MIT1002_02222	0.61	-0.7
2,484,022	+		MIT1002_02222	0.62	-0.4
2,484,038	-		MIT1002_02222	0.63	-0.0
2,484,039	-		MIT1002_02222	0.63	-0.7
2,484,140	+		MIT1002_02222	0.67	-1.3
2,484,140	+		MIT1002_02222	0.67	-2.8
2,484,140	+		MIT1002_02222	0.67	+0.4
2,484,140	+		MIT1002_02222	0.67	-0.4
2,484,140	+		MIT1002_02222	0.67	+0.5
2,484,140	+		MIT1002_02222	0.67	-0.4
2,484,148	-		MIT1002_02222	0.68	+0.3
2,484,148	-		MIT1002_02222	0.68	-2.5
2,484,150	+		MIT1002_02222	0.68	+1.2
2,484,283	-		MIT1002_02222	0.73	+0.1
2,484,283	-		MIT1002_02222	0.73	-0.3
2,484,370	+		MIT1002_02222	0.77	+0.3
2,484,387	+		MIT1002_02222	0.77	+0.0
2,484,417	+		MIT1002_02222	0.78	-0.6
2,484,417	+		MIT1002_02222	0.78	+2.3
2,484,422	+		MIT1002_02222	0.79	+0.7
2,484,432	+		MIT1002_02222	0.79	-0.3
2,484,441	+		MIT1002_02222	0.79	+0.3
2,484,485	+		MIT1002_02222	0.81	-0.7
2,484,513	-		MIT1002_02222	0.82	-0.1
2,484,573	-		MIT1002_02222	0.85	-4.2
2,484,573	-		MIT1002_02222	0.85	-0.3
2,484,617	-		MIT1002_02222	0.87	+1.0
2,484,633	-		MIT1002_02222	0.87	-0.1
2,484,635	+		MIT1002_02222	0.87	+0.2
2,484,638	-		MIT1002_02222	0.87	+0.7
2,484,719	-				+0.3
2,484,783	+				+0.1
2,484,907	-				-0.9
2,485,005	+		MIT1002_02223	0.10	+1.1
2,485,051	+		MIT1002_02223	0.17	+0.2
2,485,067	+		MIT1002_02223	0.19	-0.0
2,485,107	+		MIT1002_02223	0.25	+0.9
2,485,107	+		MIT1002_02223	0.25	-1.7
2,485,107	+		MIT1002_02223	0.25	+0.8
2,485,195	+		MIT1002_02223	0.37	-0.0
2,485,195	+		MIT1002_02223	0.37	-1.1
2,485,203	-		MIT1002_02223	0.38	-0.1
2,485,357	+		MIT1002_02223	0.60	+1.9
2,485,365	-		MIT1002_02223	0.61	+0.0
2,485,382	-		MIT1002_02223	0.63	-0.5
2,485,473	-		MIT1002_02223	0.76	+0.1
2,485,532	-		MIT1002_02223	0.84	-0.3
2,485,647	-				-1.1
2,485,758	+		MIT1002_02224	0.12	-0.0
2,485,761	-		MIT1002_02224	0.13	-0.4
2,485,761	-		MIT1002_02224	0.13	-0.6
2,485,823	-		MIT1002_02224	0.22	+1.7
2,485,823	-		MIT1002_02224	0.22	+0.7
2,485,873	-		MIT1002_02224	0.30	+1.0