Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_02166 and MIT1002_02167 are separated by 239 nucleotides MIT1002_02167 and MIT1002_02168 are separated by 56 nucleotides MIT1002_02168 and MIT1002_02169 overlap by 1 nucleotides MIT1002_02169 and MIT1002_02170 overlap by 1 nucleotides MIT1002_02170 and MIT1002_02171 overlap by 4 nucleotides
MIT1002_02166: MIT1002_02166 - tRNA-Ser, at 2,422,675 to 2,422,766
_02166
MIT1002_02167: MIT1002_02167 - Modulator of FtsH protease YccA, at 2,423,006 to 2,423,671
_02167
MIT1002_02168: MIT1002_02168 - Sulfurtransferase TusD, at 2,423,728 to 2,424,117
_02168
MIT1002_02169: MIT1002_02169 - tRNA 2-thiouridine synthesizing protein C, at 2,424,117 to 2,424,485
_02169
MIT1002_02170: MIT1002_02170 - hypothetical protein, at 2,424,485 to 2,424,805
_02170
MIT1002_02171: MIT1002_02171 - Sulfurtransferase TusE, at 2,424,802 to 2,425,149
_02171
Position (kb)
2423
2424
2425 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2422.855 kb on + strand at 2422.859 kb on + strand at 2422.867 kb on - strand at 2423.023 kb on + strand at 2423.023 kb on + strand at 2423.079 kb on + strand, within MIT1002_02167 at 2423.079 kb on + strand, within MIT1002_02167 at 2423.079 kb on + strand, within MIT1002_02167 at 2423.079 kb on + strand, within MIT1002_02167 at 2423.102 kb on + strand, within MIT1002_02167 at 2423.126 kb on + strand, within MIT1002_02167 at 2423.318 kb on + strand, within MIT1002_02167 at 2423.334 kb on + strand, within MIT1002_02167 at 2423.342 kb on + strand, within MIT1002_02167 at 2423.435 kb on + strand, within MIT1002_02167 at 2423.490 kb on + strand, within MIT1002_02167 at 2423.497 kb on + strand, within MIT1002_02167
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1 remove 2,422,855 + +1.1 2,422,859 + -0.3 2,422,867 - +0.0 2,423,023 + -2.8 2,423,023 + -1.5 2,423,079 + MIT1002_02167 0.11 -0.7 2,423,079 + MIT1002_02167 0.11 -0.5 2,423,079 + MIT1002_02167 0.11 -0.0 2,423,079 + MIT1002_02167 0.11 -0.8 2,423,102 + MIT1002_02167 0.14 +2.0 2,423,126 + MIT1002_02167 0.18 +0.1 2,423,318 + MIT1002_02167 0.47 -0.3 2,423,334 + MIT1002_02167 0.49 +1.0 2,423,342 + MIT1002_02167 0.50 -1.5 2,423,435 + MIT1002_02167 0.64 -1.2 2,423,490 + MIT1002_02167 0.73 -1.4 2,423,497 + MIT1002_02167 0.74 -0.9
Or see this region's nucleotide sequence