Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01558

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
1,709,597	-		MIT1002_01556	0.55	-2.8
1,709,609	-		MIT1002_01556	0.56	-0.8
1,709,668	-		MIT1002_01556	0.62	+0.7
1,709,727	-		MIT1002_01556	0.67	+1.1
1,709,754	+		MIT1002_01556	0.70	+0.9
1,709,757	-		MIT1002_01556	0.70	-0.3
1,709,760	+		MIT1002_01556	0.70	-0.0
1,709,766	+		MIT1002_01556	0.71	+0.1
1,709,817	+		MIT1002_01556	0.76	+1.2
1,709,817	+		MIT1002_01556	0.76	-0.0
1,709,817	+		MIT1002_01556	0.76	-0.5
1,709,825	-		MIT1002_01556	0.77	-1.9
1,709,825	-		MIT1002_01556	0.77	-1.5
1,709,851	+		MIT1002_01556	0.79	+0.2
1,709,942	-		MIT1002_01556	0.87	+1.0
1,710,008	-				+0.7
1,710,034	+				+0.4
1,710,048	+				+0.4
1,710,056	-				-0.7
1,710,159	+				-0.3
1,710,209	+				-1.7
1,710,352	+				-1.0
1,710,364	+				-0.1
1,710,372	-				+2.1
1,710,488	+				+0.4
1,710,488	+				+2.1
1,710,510	-				-1.3
1,710,609	+				+1.1
1,710,614	+				+0.3
1,710,616	+				+1.5
1,710,616	+				+0.0
1,710,622	-				-0.7
1,710,623	-				+0.0
1,710,681	-				+0.2
1,710,690	+		MIT1002_01558	0.10	+1.7
1,710,691	-		MIT1002_01558	0.11	+0.1
1,710,771	+		MIT1002_01558	0.15	+0.9
1,710,790	-		MIT1002_01558	0.16	+0.4
1,710,837	-		MIT1002_01558	0.19	+0.1
1,710,868	+		MIT1002_01558	0.21	-0.7
1,710,917	+		MIT1002_01558	0.24	-1.2
1,711,093	+		MIT1002_01558	0.34	-0.7
1,711,101	-		MIT1002_01558	0.34	+1.1
1,711,139	-		MIT1002_01558	0.37	-0.1
1,711,161	-		MIT1002_01558	0.38	-2.5
1,711,166	+		MIT1002_01558	0.38	+0.2
1,711,267	+		MIT1002_01558	0.44	-0.4
1,711,267	+		MIT1002_01558	0.44	+0.5
1,711,279	+		MIT1002_01558	0.45	-1.2
1,711,285	-		MIT1002_01558	0.45	+0.0
1,711,324	+		MIT1002_01558	0.47	-0.2
1,711,332	-		MIT1002_01558	0.48	-1.0
1,711,332	-		MIT1002_01558	0.48	-0.5
1,711,397	+		MIT1002_01558	0.52	-0.2
1,711,404	+		MIT1002_01558	0.52	+0.8
1,711,479	-		MIT1002_01558	0.56	+0.4
1,711,479	-		MIT1002_01558	0.56	-0.9
1,711,518	+		MIT1002_01558	0.59	-0.7
1,711,596	+		MIT1002_01558	0.63	-0.3
1,711,601	+		MIT1002_01558	0.63	-1.3
1,711,601	+		MIT1002_01558	0.63	+0.6
1,711,601	+		MIT1002_01558	0.63	-0.9
1,711,601	+		MIT1002_01558	0.63	-0.9
1,711,601	+		MIT1002_01558	0.63	-0.1
1,711,609	-		MIT1002_01558	0.64	+1.1
1,711,609	-		MIT1002_01558	0.64	-1.0
1,711,609	-		MIT1002_01558	0.64	+0.4
1,711,609	-		MIT1002_01558	0.64	+0.3
1,711,609	-		MIT1002_01558	0.64	-1.1
1,711,609	-		MIT1002_01558	0.64	+0.4
1,711,659	-		MIT1002_01558	0.67	-0.8
1,711,712	-		MIT1002_01558	0.70	-0.2
1,711,723	+		MIT1002_01558	0.71	-0.6
1,711,731	-		MIT1002_01558	0.71	-0.4
1,711,789	+		MIT1002_01558	0.74	-0.1
1,711,789	+		MIT1002_01558	0.74	-0.3
1,711,789	+		MIT1002_01558	0.74	-0.8
1,711,789	+		MIT1002_01558	0.74	+0.8
1,711,790	+		MIT1002_01558	0.74	-0.8
1,711,797	-		MIT1002_01558	0.75	-0.1
1,711,797	-		MIT1002_01558	0.75	-0.1
1,711,824	-		MIT1002_01558	0.76	+0.3
1,711,824	-		MIT1002_01558	0.76	+0.6
1,711,837	+		MIT1002_01558	0.77	+1.1
1,711,837	+		MIT1002_01558	0.77	+0.5
1,711,837	+		MIT1002_01558	0.77	-0.1
1,711,837	+		MIT1002_01558	0.77	-0.2
1,711,845	-		MIT1002_01558	0.78	-1.9
1,711,954	-		MIT1002_01558	0.84	-0.3
1,712,223	+				-0.2
1,712,231	-				+0.3
1,712,234	+				+0.4
1,712,274	+				+0.3
1,712,283	-				+1.0
1,712,334	-				-1.3
1,712,366	+				+0.0
1,712,366	+				-1.9
1,712,369	-				+0.4
1,712,379	+				+0.5
1,712,379	+				-0.2
1,712,387	-				-0.2
1,712,403	+				-0.3
1,712,411	-				-1.7
1,712,430	+				-0.2
1,712,449	+				-0.4
1,712,459	+				-1.5
1,712,579	+				-1.2
1,712,613	-		MIT1002_01559	0.12	+0.6
1,712,693	-		MIT1002_01559	0.16	+0.8
1,712,762	+		MIT1002_01559	0.19	+0.1
1,712,869	-		MIT1002_01559	0.25	+0.5
1,712,935	-		MIT1002_01559	0.28	+0.0
1,712,972	-		MIT1002_01559	0.30	+0.9
1,713,022	+		MIT1002_01559	0.33	+1.9
1,713,035	-		MIT1002_01559	0.33	+0.9
1,713,045	-		MIT1002_01559	0.34	-1.2
1,713,117	+		MIT1002_01559	0.38	-0.4
1,713,125	-		MIT1002_01559	0.38	+2.8