Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00987

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
1,093,686	+		MIT1002_00986	0.28	+0.3
1,093,717	+		MIT1002_00986	0.30	-0.5
1,093,774	+		MIT1002_00986	0.34	+0.6
1,093,782	-		MIT1002_00986	0.35	-0.1
1,093,821	+		MIT1002_00986	0.38	+1.4
1,093,829	+		MIT1002_00986	0.38	+0.3
1,093,895	+		MIT1002_00986	0.43	+0.3
1,093,904	-		MIT1002_00986	0.44	+0.8
1,093,907	+		MIT1002_00986	0.44	-0.1
1,093,937	-		MIT1002_00986	0.46	-0.2
1,094,043	+		MIT1002_00986	0.54	-0.6
1,094,054	+		MIT1002_00986	0.55	-2.1
1,094,074	-		MIT1002_00986	0.56	-0.6
1,094,098	-		MIT1002_00986	0.58	-1.0
1,094,154	-		MIT1002_00986	0.62	-0.3
1,094,245	-		MIT1002_00986	0.69	-0.3
1,094,362	+		MIT1002_00986	0.77	-2.6
1,094,362	+		MIT1002_00986	0.77	-0.5
1,094,362	+		MIT1002_00986	0.77	-0.7
1,094,404	-		MIT1002_00986	0.80	-0.4
1,094,539	+				-1.3
1,094,539	+				+0.3
1,094,539	+				-2.9
1,094,547	-				+0.5
1,094,547	-				-0.2
1,094,547	-				-0.7
1,094,547	-				+1.3
1,094,547	-				-0.7
1,094,569	-				-1.0
1,094,643	-				-0.4
1,094,648	+				-0.7
1,094,656	-				-1.6
1,094,656	-				+0.1
1,094,656	-				-1.5
1,094,689	-				+0.9
1,094,859	-		MIT1002_00987	0.11	+0.1
1,095,009	+		MIT1002_00987	0.21	-0.5
1,095,033	+		MIT1002_00987	0.23	-1.0
1,095,107	-		MIT1002_00987	0.27	-0.1
1,095,110	+		MIT1002_00987	0.28	+0.1
1,095,172	+		MIT1002_00987	0.32	-0.1
1,095,174	+		MIT1002_00987	0.32	-0.2
1,095,182	-		MIT1002_00987	0.32	-0.2
1,095,261	-		MIT1002_00987	0.37	+0.1
1,095,261	-		MIT1002_00987	0.37	+0.8
1,095,263	+		MIT1002_00987	0.37	-0.5
1,095,280	+		MIT1002_00987	0.38	+0.8
1,095,313	+		MIT1002_00987	0.41	-0.3
1,095,313	+		MIT1002_00987	0.41	+1.0
1,095,313	+		MIT1002_00987	0.41	-0.3
1,095,358	+		MIT1002_00987	0.43	+0.5
1,095,358	+		MIT1002_00987	0.43	+0.7
1,095,358	+		MIT1002_00987	0.43	-0.0
1,095,358	-		MIT1002_00987	0.43	+0.5
1,095,366	-		MIT1002_00987	0.44	+0.6
1,095,375	-		MIT1002_00987	0.45	-0.4
1,095,400	-		MIT1002_00987	0.46	-1.1
1,095,414	-		MIT1002_00987	0.47	+1.1
1,095,417	+		MIT1002_00987	0.47	-0.7
1,095,417	+		MIT1002_00987	0.47	-0.6
1,095,417	+		MIT1002_00987	0.47	+0.1
1,095,425	-		MIT1002_00987	0.48	+0.6
1,095,438	+		MIT1002_00987	0.49	-2.2
1,095,438	+		MIT1002_00987	0.49	+0.4
1,095,467	+		MIT1002_00987	0.50	-0.8
1,095,469	+		MIT1002_00987	0.51	-0.7
1,095,475	-		MIT1002_00987	0.51	+0.4
1,095,521	+		MIT1002_00987	0.54	+0.2
1,095,544	+		MIT1002_00987	0.55	-0.8
1,095,557	-		MIT1002_00987	0.56	-1.3
1,095,558	-		MIT1002_00987	0.56	-0.6
1,095,725	+		MIT1002_00987	0.67	-0.7
1,095,793	-		MIT1002_00987	0.71	-1.0
1,095,805	+		MIT1002_00987	0.72	+0.3
1,095,805	+		MIT1002_00987	0.72	-0.0
1,095,832	+		MIT1002_00987	0.74	-3.3
1,095,932	-		MIT1002_00987	0.80	-0.6
1,096,050	+		MIT1002_00987	0.88	+0.2
1,096,068	-		MIT1002_00987	0.89	+0.3
1,096,164	+				-0.3
1,096,278	+				-0.0
1,096,278	+				-1.2
1,096,286	-				-0.9
1,096,288	-				+0.3
1,096,292	-				+0.2
1,096,293	+				-0.2
1,096,293	-				+0.0
1,096,344	-				-2.4
1,096,367	+				-1.7
1,096,374	-				-1.2
1,096,374	-				-2.7
1,096,374	-				-2.4
1,096,409	+		MIT1002_00988	0.11	-0.2
1,096,409	+		MIT1002_00988	0.11	-0.7
1,096,417	-		MIT1002_00988	0.12	-0.6
1,096,417	-		MIT1002_00988	0.12	-1.4
1,096,457	+		MIT1002_00988	0.17	-2.2
1,096,465	-		MIT1002_00988	0.18	-1.3
1,096,490	+		MIT1002_00988	0.21	-1.9
1,096,490	+		MIT1002_00988	0.21	-4.2
1,096,495	+		MIT1002_00988	0.21	-1.9
1,096,498	-		MIT1002_00988	0.22	-0.5
1,096,498	-		MIT1002_00988	0.22	-0.6
1,096,498	-		MIT1002_00988	0.22	+0.1
1,096,559	-		MIT1002_00988	0.29	-2.8
1,096,650	-		MIT1002_00988	0.39	-2.8
1,096,650	-		MIT1002_00988	0.39	-0.1
1,096,650	-		MIT1002_00988	0.39	-0.2
1,096,650	-		MIT1002_00988	0.39	-0.8
1,096,741	+		MIT1002_00988	0.50	-0.5
1,096,741	+		MIT1002_00988	0.50	-1.5
1,096,749	-		MIT1002_00988	0.51	-0.1
1,096,749	-		MIT1002_00988	0.51	-1.7
1,096,751	-		MIT1002_00988	0.51	+0.3
1,096,784	+		MIT1002_00988	0.55	-1.2
1,096,787	-		MIT1002_00988	0.55	-2.1
1,096,830	-		MIT1002_00988	0.60	-1.0
1,096,908	+		MIT1002_00988	0.69	-0.3
1,096,916	+		MIT1002_00988	0.70	-0.7
1,096,916	-		MIT1002_00988	0.70	-0.2
1,096,916	-		MIT1002_00988	0.70	-3.5
1,096,919	-		MIT1002_00988	0.71	-2.1
1,096,947	-		MIT1002_00988	0.74	-2.9
1,096,997	-		MIT1002_00988	0.80	-0.7
1,096,999	-		MIT1002_00988	0.80	-0.7
1,097,027	+		MIT1002_00988	0.83	-0.5
1,097,042	+		MIT1002_00988	0.85	-0.5
1,097,118	-				+0.2
1,097,120	+				-2.0
1,097,129	-				-2.4
1,097,232	-				+0.6
1,097,234	-				+0.2