Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00804

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00803 and MIT1002_00804 overlap by 4 nucleotidesMIT1002_00804 and MIT1002_00805 overlap by 11 nucleotidesMIT1002_00805 and MIT1002_00806 are separated by 90 nucleotides MIT1002_00803: MIT1002_00803 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 889,887 to 891,698 _00803 MIT1002_00804: MIT1002_00804 - SNARE associated Golgi protein, at 891,695 to 892,372 _00804 MIT1002_00805: MIT1002_00805 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 892,362 to 893,099 _00805 MIT1002_00806: MIT1002_00806 - hypothetical protein, at 893,190 to 893,891 _00806 Position (kb) 891 892 893Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 890.697 kb on - strand, within MIT1002_00803at 890.697 kb on - strand, within MIT1002_00803at 890.726 kb on - strand, within MIT1002_00803at 890.730 kb on + strand, within MIT1002_00803at 890.738 kb on - strand, within MIT1002_00803at 890.738 kb on - strand, within MIT1002_00803at 890.776 kb on - strand, within MIT1002_00803at 890.819 kb on - strand, within MIT1002_00803at 890.906 kb on + strand, within MIT1002_00803at 890.906 kb on + strand, within MIT1002_00803at 890.907 kb on - strand, within MIT1002_00803at 890.919 kb on - strand, within MIT1002_00803at 890.992 kb on + strand, within MIT1002_00803at 891.066 kb on - strand, within MIT1002_00803at 891.180 kb on - strand, within MIT1002_00803at 891.181 kb on + strand, within MIT1002_00803at 891.204 kb on + strand, within MIT1002_00803at 891.316 kb on - strand, within MIT1002_00803at 891.323 kb on - strand, within MIT1002_00803at 891.335 kb on - strand, within MIT1002_00803at 891.382 kb on - strand, within MIT1002_00803at 891.406 kb on + strand, within MIT1002_00803at 891.424 kb on + strand, within MIT1002_00803at 891.424 kb on + strand, within MIT1002_00803at 891.446 kb on + strand, within MIT1002_00803at 891.454 kb on - strand, within MIT1002_00803at 891.489 kb on + strand, within MIT1002_00803at 891.493 kb on + strand, within MIT1002_00803at 891.548 kb on + strandat 891.548 kb on + strandat 891.617 kb on + strandat 891.641 kb on - strandat 891.659 kb on + strandat 891.659 kb on + strandat 891.659 kb on + strandat 891.659 kb on + strandat 891.659 kb on + strandat 891.665 kb on + strandat 891.667 kb on - strandat 891.667 kb on - strandat 891.686 kb on + strandat 891.692 kb on + strandat 891.702 kb on + strandat 891.740 kb on - strandat 891.756 kb on - strandat 891.781 kb on + strand, within MIT1002_00804at 891.781 kb on + strand, within MIT1002_00804at 891.887 kb on + strand, within MIT1002_00804at 891.928 kb on - strand, within MIT1002_00804at 892.021 kb on + strand, within MIT1002_00804at 892.029 kb on - strand, within MIT1002_00804at 892.066 kb on - strand, within MIT1002_00804at 892.094 kb on + strand, within MIT1002_00804at 892.162 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.291 kb on + strand, within MIT1002_00804at 892.291 kb on + strand, within MIT1002_00804at 892.299 kb on - strand, within MIT1002_00804at 892.299 kb on - strand, within MIT1002_00804at 892.469 kb on - strand, within MIT1002_00805at 892.469 kb on - strand, within MIT1002_00805at 892.532 kb on + strand, within MIT1002_00805at 892.539 kb on - strand, within MIT1002_00805at 892.539 kb on - strand, within MIT1002_00805at 892.539 kb on - strand, within MIT1002_00805at 892.634 kb on + strand, within MIT1002_00805at 892.634 kb on + strand, within MIT1002_00805at 892.655 kb on - strand, within MIT1002_00805at 892.736 kb on - strand, within MIT1002_00805at 892.741 kb on - strand, within MIT1002_00805at 892.753 kb on + strand, within MIT1002_00805at 892.753 kb on + strand, within MIT1002_00805at 892.753 kb on + strand, within MIT1002_00805at 892.753 kb on + strand, within MIT1002_00805at 892.761 kb on + strand, within MIT1002_00805at 892.761 kb on - strand, within MIT1002_00805at 892.761 kb on - strand, within MIT1002_00805at 892.761 kb on - strand, within MIT1002_00805at 892.761 kb on - strand, within MIT1002_00805at 892.769 kb on - strand, within MIT1002_00805at 892.817 kb on + strand, within MIT1002_00805at 892.875 kb on + strand, within MIT1002_00805at 892.875 kb on + strand, within MIT1002_00805at 892.907 kb on + strand, within MIT1002_00805at 892.966 kb on + strand, within MIT1002_00805at 893.038 kb on + strandat 893.054 kb on - strandat 893.133 kb on - strandat 893.166 kb on - strandat 893.211 kb on + strandat 893.307 kb on + strand, within MIT1002_00806at 893.318 kb on + strand, within MIT1002_00806at 893.352 kb on - strand, within MIT1002_00806

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
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890,697 - MIT1002_00803 0.45 -0.5
890,697 - MIT1002_00803 0.45 -2.1
890,726 - MIT1002_00803 0.46 -0.5
890,730 + MIT1002_00803 0.47 +0.8
890,738 - MIT1002_00803 0.47 +2.2
890,738 - MIT1002_00803 0.47 -1.0
890,776 - MIT1002_00803 0.49 -0.3
890,819 - MIT1002_00803 0.51 +0.1
890,906 + MIT1002_00803 0.56 -0.0
890,906 + MIT1002_00803 0.56 +1.3
890,907 - MIT1002_00803 0.56 -0.8
890,919 - MIT1002_00803 0.57 -2.3
890,992 + MIT1002_00803 0.61 +0.8
891,066 - MIT1002_00803 0.65 -0.6
891,180 - MIT1002_00803 0.71 -0.2
891,181 + MIT1002_00803 0.71 -2.0
891,204 + MIT1002_00803 0.73 -0.1
891,316 - MIT1002_00803 0.79 +0.2
891,323 - MIT1002_00803 0.79 +1.2
891,335 - MIT1002_00803 0.80 +0.0
891,382 - MIT1002_00803 0.83 -0.1
891,406 + MIT1002_00803 0.84 -1.0
891,424 + MIT1002_00803 0.85 +0.5
891,424 + MIT1002_00803 0.85 -0.4
891,446 + MIT1002_00803 0.86 +0.1
891,454 - MIT1002_00803 0.86 +0.6
891,489 + MIT1002_00803 0.88 +0.2
891,493 + MIT1002_00803 0.89 +0.9
891,548 + +1.4
891,548 + +1.0
891,617 + +0.2
891,641 - -0.1
891,659 + -1.4
891,659 + -0.5
891,659 + -0.3
891,659 + -1.0
891,659 + -1.2
891,665 + -0.4
891,667 - -2.8
891,667 - -0.0
891,686 + -0.1
891,692 + -0.7
891,702 + +0.6
891,740 - -0.9
891,756 - +0.1
891,781 + MIT1002_00804 0.13 +1.5
891,781 + MIT1002_00804 0.13 -0.9
891,887 + MIT1002_00804 0.28 +0.1
891,928 - MIT1002_00804 0.34 -0.2
892,021 + MIT1002_00804 0.48 +0.1
892,029 - MIT1002_00804 0.49 -0.6
892,066 - MIT1002_00804 0.55 +0.7
892,094 + MIT1002_00804 0.59 -0.5
892,162 - MIT1002_00804 0.69 -0.8
892,200 - MIT1002_00804 0.74 -1.0
892,200 - MIT1002_00804 0.74 +0.6
892,200 - MIT1002_00804 0.74 -0.0
892,200 - MIT1002_00804 0.74 -2.0
892,291 + MIT1002_00804 0.88 +0.1
892,291 + MIT1002_00804 0.88 -0.4
892,299 - MIT1002_00804 0.89 +0.0
892,299 - MIT1002_00804 0.89 -1.5
892,469 - MIT1002_00805 0.14 +0.0
892,469 - MIT1002_00805 0.14 -2.0
892,532 + MIT1002_00805 0.23 +0.7
892,539 - MIT1002_00805 0.24 +0.4
892,539 - MIT1002_00805 0.24 +0.9
892,539 - MIT1002_00805 0.24 +0.5
892,634 + MIT1002_00805 0.37 -0.8
892,634 + MIT1002_00805 0.37 +0.6
892,655 - MIT1002_00805 0.40 -0.1
892,736 - MIT1002_00805 0.51 -0.6
892,741 - MIT1002_00805 0.51 +0.0
892,753 + MIT1002_00805 0.53 +0.0
892,753 + MIT1002_00805 0.53 +0.2
892,753 + MIT1002_00805 0.53 +0.9
892,753 + MIT1002_00805 0.53 -0.3
892,761 + MIT1002_00805 0.54 +0.8
892,761 - MIT1002_00805 0.54 +0.6
892,761 - MIT1002_00805 0.54 -0.4
892,761 - MIT1002_00805 0.54 -1.9
892,761 - MIT1002_00805 0.54 +0.4
892,769 - MIT1002_00805 0.55 -0.7
892,817 + MIT1002_00805 0.62 -0.5
892,875 + MIT1002_00805 0.70 +0.8
892,875 + MIT1002_00805 0.70 -0.3
892,907 + MIT1002_00805 0.74 +0.3
892,966 + MIT1002_00805 0.82 +0.5
893,038 + -0.1
893,054 - +0.9
893,133 - -0.1
893,166 - -0.6
893,211 + -0.1
893,307 + MIT1002_00806 0.17 -1.4
893,318 + MIT1002_00806 0.18 -1.0
893,352 - MIT1002_00806 0.23 -0.0

Or see this region's nucleotide sequence