Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00726

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00725 and MIT1002_00726 are separated by 55 nucleotidesMIT1002_00726 and MIT1002_00727 are separated by 65 nucleotidesMIT1002_00727 and MIT1002_00728 are separated by 227 nucleotides MIT1002_00725: MIT1002_00725 - D-galactonate dehydratase, at 793,324 to 794,508 _00725 MIT1002_00726: MIT1002_00726 - aldolase II superfamily protein, at 794,564 to 795,331 _00726 MIT1002_00727: MIT1002_00727 - nucleoside triphosphatase YtkD, at 795,397 to 795,942 _00727 MIT1002_00728: MIT1002_00728 - Multidrug transporter MdtA, at 796,170 to 797,219 _00728 Position (kb) 794 795 796Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 793.564 kb on - strand, within MIT1002_00725at 793.581 kb on - strand, within MIT1002_00725at 793.608 kb on - strand, within MIT1002_00725at 793.657 kb on - strand, within MIT1002_00725at 793.695 kb on - strand, within MIT1002_00725at 793.712 kb on - strand, within MIT1002_00725at 793.720 kb on - strand, within MIT1002_00725at 793.756 kb on + strand, within MIT1002_00725at 793.759 kb on - strand, within MIT1002_00725at 793.801 kb on - strand, within MIT1002_00725at 793.831 kb on + strand, within MIT1002_00725at 793.836 kb on + strand, within MIT1002_00725at 793.855 kb on - strand, within MIT1002_00725at 793.935 kb on + strand, within MIT1002_00725at 793.935 kb on + strand, within MIT1002_00725at 793.943 kb on - strand, within MIT1002_00725at 793.943 kb on - strand, within MIT1002_00725at 793.959 kb on + strand, within MIT1002_00725at 794.012 kb on + strand, within MIT1002_00725at 794.012 kb on + strand, within MIT1002_00725at 794.126 kb on - strand, within MIT1002_00725at 794.179 kb on + strand, within MIT1002_00725at 794.199 kb on - strand, within MIT1002_00725at 794.200 kb on + strand, within MIT1002_00725at 794.293 kb on + strand, within MIT1002_00725at 794.320 kb on - strand, within MIT1002_00725at 794.366 kb on - strand, within MIT1002_00725at 794.377 kb on - strand, within MIT1002_00725at 794.381 kb on + strand, within MIT1002_00725at 794.391 kb on + strandat 794.426 kb on + strandat 794.426 kb on + strandat 794.434 kb on - strandat 794.434 kb on - strandat 794.550 kb on - strandat 794.652 kb on + strand, within MIT1002_00726at 794.652 kb on + strand, within MIT1002_00726at 794.652 kb on + strand, within MIT1002_00726at 794.652 kb on + strand, within MIT1002_00726at 794.660 kb on - strand, within MIT1002_00726at 794.660 kb on - strand, within MIT1002_00726at 794.660 kb on - strand, within MIT1002_00726at 794.677 kb on + strand, within MIT1002_00726at 794.727 kb on - strand, within MIT1002_00726at 794.728 kb on - strand, within MIT1002_00726at 794.790 kb on + strand, within MIT1002_00726at 794.798 kb on + strand, within MIT1002_00726at 794.799 kb on - strand, within MIT1002_00726at 794.799 kb on - strand, within MIT1002_00726at 794.805 kb on - strand, within MIT1002_00726at 794.805 kb on - strand, within MIT1002_00726at 794.839 kb on + strand, within MIT1002_00726at 794.881 kb on + strand, within MIT1002_00726at 794.882 kb on + strand, within MIT1002_00726at 794.882 kb on + strand, within MIT1002_00726at 794.890 kb on - strand, within MIT1002_00726at 794.947 kb on + strand, within MIT1002_00726at 794.954 kb on - strand, within MIT1002_00726at 794.985 kb on - strand, within MIT1002_00726at 794.998 kb on + strand, within MIT1002_00726at 795.016 kb on - strand, within MIT1002_00726at 795.047 kb on - strand, within MIT1002_00726at 795.064 kb on + strand, within MIT1002_00726at 795.064 kb on + strand, within MIT1002_00726at 795.093 kb on + strand, within MIT1002_00726at 795.093 kb on + strand, within MIT1002_00726at 795.111 kb on + strand, within MIT1002_00726at 795.128 kb on + strand, within MIT1002_00726at 795.129 kb on - strand, within MIT1002_00726at 795.151 kb on + strand, within MIT1002_00726at 795.151 kb on + strand, within MIT1002_00726at 795.154 kb on - strand, within MIT1002_00726at 795.188 kb on - strand, within MIT1002_00726at 795.199 kb on + strand, within MIT1002_00726at 795.237 kb on + strand, within MIT1002_00726at 795.307 kb on + strandat 795.307 kb on + strandat 795.308 kb on + strandat 795.344 kb on + strandat 795.429 kb on - strandat 795.449 kb on - strandat 795.480 kb on + strand, within MIT1002_00727at 795.480 kb on + strand, within MIT1002_00727at 795.480 kb on + strand, within MIT1002_00727at 795.480 kb on + strand, within MIT1002_00727at 795.488 kb on - strand, within MIT1002_00727at 795.488 kb on - strand, within MIT1002_00727at 795.488 kb on - strand, within MIT1002_00727at 795.490 kb on - strand, within MIT1002_00727at 795.494 kb on + strand, within MIT1002_00727at 795.537 kb on + strand, within MIT1002_00727at 795.545 kb on - strand, within MIT1002_00727at 795.600 kb on + strand, within MIT1002_00727at 795.637 kb on + strand, within MIT1002_00727at 795.669 kb on + strand, within MIT1002_00727at 795.677 kb on - strand, within MIT1002_00727at 795.798 kb on + strand, within MIT1002_00727at 795.808 kb on + strand, within MIT1002_00727at 795.808 kb on + strand, within MIT1002_00727at 795.833 kb on + strand, within MIT1002_00727at 795.833 kb on + strand, within MIT1002_00727at 796.064 kb on - strandat 796.072 kb on - strandat 796.121 kb on - strandat 796.166 kb on + strandat 796.166 kb on + strandat 796.167 kb on - strandat 796.215 kb on - strandat 796.215 kb on - strandat 796.225 kb on + strandat 796.233 kb on - strandat 796.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
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793,564 - MIT1002_00725 0.20 -1.0
793,581 - MIT1002_00725 0.22 +0.3
793,608 - MIT1002_00725 0.24 +2.2
793,657 - MIT1002_00725 0.28 -0.4
793,695 - MIT1002_00725 0.31 +0.1
793,712 - MIT1002_00725 0.33 -0.4
793,720 - MIT1002_00725 0.33 -0.5
793,756 + MIT1002_00725 0.36 +0.5
793,759 - MIT1002_00725 0.37 +0.6
793,801 - MIT1002_00725 0.40 +1.7
793,831 + MIT1002_00725 0.43 +0.9
793,836 + MIT1002_00725 0.43 -0.6
793,855 - MIT1002_00725 0.45 -0.8
793,935 + MIT1002_00725 0.52 +0.2
793,935 + MIT1002_00725 0.52 -0.5
793,943 - MIT1002_00725 0.52 +0.7
793,943 - MIT1002_00725 0.52 -0.4
793,959 + MIT1002_00725 0.54 -1.1
794,012 + MIT1002_00725 0.58 +0.4
794,012 + MIT1002_00725 0.58 +1.2
794,126 - MIT1002_00725 0.68 -0.1
794,179 + MIT1002_00725 0.72 -0.4
794,199 - MIT1002_00725 0.74 -3.0
794,200 + MIT1002_00725 0.74 +0.8
794,293 + MIT1002_00725 0.82 +0.2
794,320 - MIT1002_00725 0.84 +0.3
794,366 - MIT1002_00725 0.88 -0.6
794,377 - MIT1002_00725 0.89 +0.2
794,381 + MIT1002_00725 0.89 -2.7
794,391 + -1.4
794,426 + -0.1
794,426 + -0.4
794,434 - +0.3
794,434 - -0.6
794,550 - +0.9
794,652 + MIT1002_00726 0.11 -0.8
794,652 + MIT1002_00726 0.11 +1.0
794,652 + MIT1002_00726 0.11 +0.2
794,652 + MIT1002_00726 0.11 +0.3
794,660 - MIT1002_00726 0.12 +1.3
794,660 - MIT1002_00726 0.12 +0.2
794,660 - MIT1002_00726 0.12 +0.4
794,677 + MIT1002_00726 0.15 +0.2
794,727 - MIT1002_00726 0.21 +0.7
794,728 - MIT1002_00726 0.21 -0.3
794,790 + MIT1002_00726 0.29 -0.2
794,798 + MIT1002_00726 0.30 +0.0
794,799 - MIT1002_00726 0.31 +0.6
794,799 - MIT1002_00726 0.31 -0.5
794,805 - MIT1002_00726 0.31 -0.6
794,805 - MIT1002_00726 0.31 +0.1
794,839 + MIT1002_00726 0.36 -3.4
794,881 + MIT1002_00726 0.41 +1.0
794,882 + MIT1002_00726 0.41 +1.6
794,882 + MIT1002_00726 0.41 -4.2
794,890 - MIT1002_00726 0.42 -1.1
794,947 + MIT1002_00726 0.50 -0.3
794,954 - MIT1002_00726 0.51 +2.4
794,985 - MIT1002_00726 0.55 +0.3
794,998 + MIT1002_00726 0.57 -0.1
795,016 - MIT1002_00726 0.59 +0.1
795,047 - MIT1002_00726 0.63 -1.3
795,064 + MIT1002_00726 0.65 +1.2
795,064 + MIT1002_00726 0.65 -0.6
795,093 + MIT1002_00726 0.69 +0.9
795,093 + MIT1002_00726 0.69 +1.4
795,111 + MIT1002_00726 0.71 +1.0
795,128 + MIT1002_00726 0.73 +0.0
795,129 - MIT1002_00726 0.74 -0.4
795,151 + MIT1002_00726 0.76 +0.3
795,151 + MIT1002_00726 0.76 -0.1
795,154 - MIT1002_00726 0.77 +0.5
795,188 - MIT1002_00726 0.81 -2.3
795,199 + MIT1002_00726 0.83 -0.4
795,237 + MIT1002_00726 0.88 +0.6
795,307 + -0.0
795,307 + +0.4
795,308 + +0.9
795,344 + -0.7
795,429 - +0.1
795,449 - +1.0
795,480 + MIT1002_00727 0.15 -0.6
795,480 + MIT1002_00727 0.15 +0.2
795,480 + MIT1002_00727 0.15 -2.4
795,480 + MIT1002_00727 0.15 -1.2
795,488 - MIT1002_00727 0.17 +1.9
795,488 - MIT1002_00727 0.17 -0.5
795,488 - MIT1002_00727 0.17 -0.2
795,490 - MIT1002_00727 0.17 -0.1
795,494 + MIT1002_00727 0.18 -0.8
795,537 + MIT1002_00727 0.26 +0.8
795,545 - MIT1002_00727 0.27 +0.6
795,600 + MIT1002_00727 0.37 -0.5
795,637 + MIT1002_00727 0.44 -0.6
795,669 + MIT1002_00727 0.50 +0.1
795,677 - MIT1002_00727 0.51 +0.5
795,798 + MIT1002_00727 0.73 +1.4
795,808 + MIT1002_00727 0.75 -0.1
795,808 + MIT1002_00727 0.75 -0.8
795,833 + MIT1002_00727 0.80 +0.6
795,833 + MIT1002_00727 0.80 -1.1
796,064 - -0.4
796,072 - +0.4
796,121 - +0.1
796,166 + -0.1
796,166 + +0.1
796,167 - -0.5
796,215 - +1.0
796,215 - +0.7
796,225 + -0.8
796,233 - +0.3
796,270 + +0.2

Or see this region's nucleotide sequence