Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00397 and MIT1002_00398 are separated by 241 nucleotides MIT1002_00398 and MIT1002_00399 are separated by 21 nucleotides MIT1002_00399 and MIT1002_00400 are separated by 60 nucleotides
MIT1002_00397: MIT1002_00397 - hypothetical protein, at 426,034 to 426,885
_00397
MIT1002_00398: MIT1002_00398 - hypothetical protein, at 427,127 to 427,384
_00398
MIT1002_00399: MIT1002_00399 - hypothetical protein, at 427,406 to 427,714
_00399
MIT1002_00400: MIT1002_00400 - hypothetical protein, at 427,775 to 429,685
_00400
Position (kb) 427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 426.406 kb on - strand, within MIT1002_00397 at 426.422 kb on + strand, within MIT1002_00397 at 426.443 kb on + strand, within MIT1002_00397 at 426.493 kb on - strand, within MIT1002_00397 at 426.509 kb on + strand, within MIT1002_00397 at 426.554 kb on + strand, within MIT1002_00397 at 426.568 kb on - strand, within MIT1002_00397 at 426.581 kb on + strand, within MIT1002_00397 at 426.602 kb on - strand, within MIT1002_00397 at 426.620 kb on - strand, within MIT1002_00397 at 426.648 kb on - strand, within MIT1002_00397 at 426.748 kb on - strand, within MIT1002_00397 at 426.749 kb on + strand, within MIT1002_00397 at 426.763 kb on - strand, within MIT1002_00397 at 426.836 kb on + strand at 426.844 kb on - strand at 426.895 kb on + strand at 426.948 kb on + strand at 426.981 kb on + strand at 427.002 kb on + strand at 427.043 kb on + strand at 427.065 kb on - strand at 427.069 kb on + strand at 427.092 kb on + strand at 427.228 kb on - strand, within MIT1002_00398 at 427.365 kb on + strand at 427.439 kb on + strand, within MIT1002_00399 at 427.475 kb on + strand, within MIT1002_00399 at 427.520 kb on - strand, within MIT1002_00399 at 427.633 kb on + strand, within MIT1002_00399 at 427.672 kb on - strand, within MIT1002_00399 at 427.673 kb on - strand, within MIT1002_00399 at 427.757 kb on + strand at 427.780 kb on + strand at 427.780 kb on + strand at 427.788 kb on - strand at 427.795 kb on + strand at 427.803 kb on - strand at 427.968 kb on + strand, within MIT1002_00400 at 427.976 kb on - strand, within MIT1002_00400 at 427.976 kb on - strand, within MIT1002_00400 at 428.090 kb on - strand, within MIT1002_00400 at 428.111 kb on + strand, within MIT1002_00400 at 428.119 kb on + strand, within MIT1002_00400 at 428.128 kb on - strand, within MIT1002_00400 at 428.149 kb on + strand, within MIT1002_00400 at 428.157 kb on - strand, within MIT1002_00400 at 428.162 kb on + strand, within MIT1002_00400 at 428.298 kb on - strand, within MIT1002_00400 at 428.300 kb on - strand, within MIT1002_00400 at 428.308 kb on - strand, within MIT1002_00400 at 428.347 kb on - strand, within MIT1002_00400 at 428.444 kb on - strand, within MIT1002_00400 at 428.448 kb on - strand, within MIT1002_00400 at 428.509 kb on - strand, within MIT1002_00400 at 428.515 kb on - strand, within MIT1002_00400 at 428.576 kb on + strand, within MIT1002_00400 at 428.708 kb on + strand, within MIT1002_00400
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1 remove 426,406 - MIT1002_00397 0.44 -0.9 426,422 + MIT1002_00397 0.46 +2.0 426,443 + MIT1002_00397 0.48 -0.8 426,493 - MIT1002_00397 0.54 +0.1 426,509 + MIT1002_00397 0.56 +1.5 426,554 + MIT1002_00397 0.61 -0.8 426,568 - MIT1002_00397 0.63 -1.2 426,581 + MIT1002_00397 0.64 -1.2 426,602 - MIT1002_00397 0.67 +1.4 426,620 - MIT1002_00397 0.69 -2.2 426,648 - MIT1002_00397 0.72 -0.6 426,748 - MIT1002_00397 0.84 -0.6 426,749 + MIT1002_00397 0.84 -2.8 426,763 - MIT1002_00397 0.86 +0.7 426,836 + -0.1 426,844 - +0.9 426,895 + +0.7 426,948 + +0.6 426,981 + -0.4 427,002 + -2.3 427,043 + -1.4 427,065 - -0.6 427,069 + -0.0 427,092 + +0.9 427,228 - MIT1002_00398 0.39 -0.8 427,365 + -0.4 427,439 + MIT1002_00399 0.11 -1.6 427,475 + MIT1002_00399 0.22 -0.0 427,520 - MIT1002_00399 0.37 -0.9 427,633 + MIT1002_00399 0.73 -0.4 427,672 - MIT1002_00399 0.86 +0.8 427,673 - MIT1002_00399 0.86 -0.5 427,757 + -0.7 427,780 + +0.7 427,780 + -0.4 427,788 - +0.4 427,795 + -0.0 427,803 - -0.6 427,968 + MIT1002_00400 0.10 +0.7 427,976 - MIT1002_00400 0.11 +0.7 427,976 - MIT1002_00400 0.11 +0.3 428,090 - MIT1002_00400 0.16 +0.8 428,111 + MIT1002_00400 0.18 +1.2 428,119 + MIT1002_00400 0.18 +1.1 428,128 - MIT1002_00400 0.18 +1.3 428,149 + MIT1002_00400 0.20 -0.3 428,157 - MIT1002_00400 0.20 +0.1 428,162 + MIT1002_00400 0.20 +0.7 428,298 - MIT1002_00400 0.27 +0.4 428,300 - MIT1002_00400 0.27 +0.0 428,308 - MIT1002_00400 0.28 -0.1 428,347 - MIT1002_00400 0.30 +0.1 428,444 - MIT1002_00400 0.35 +0.2 428,448 - MIT1002_00400 0.35 +0.1 428,509 - MIT1002_00400 0.38 +0.1 428,515 - MIT1002_00400 0.39 -0.5 428,576 + MIT1002_00400 0.42 -0.5 428,708 + MIT1002_00400 0.49 +0.2
Or see this region's nucleotide sequence