Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00369 and MIT1002_00370 are separated by 65 nucleotides MIT1002_00370 and MIT1002_00371 overlap by 4 nucleotides MIT1002_00371 and MIT1002_00372 are separated by 615 nucleotides
MIT1002_00369: MIT1002_00369 - hypothetical protein, at 398,531 to 399,148
_00369
MIT1002_00370: MIT1002_00370 - hypothetical protein, at 399,214 to 399,981
_00370
MIT1002_00371: MIT1002_00371 - Alcohol dehydrogenase 2, at 399,978 to 401,126
_00371
MIT1002_00372: MIT1002_00372 - 16S ribosomal RNA, at 401,742 to 403,262
_00372
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 398.987 kb on - strand, within MIT1002_00369 at 398.996 kb on - strand, within MIT1002_00369 at 399.090 kb on - strand at 399.095 kb on - strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.179 kb on + strand at 399.179 kb on + strand at 399.181 kb on + strand at 399.182 kb on - strand at 399.203 kb on + strand at 399.224 kb on - strand at 399.307 kb on + strand, within MIT1002_00370 at 399.325 kb on - strand, within MIT1002_00370 at 399.380 kb on + strand, within MIT1002_00370 at 399.388 kb on - strand, within MIT1002_00370 at 399.423 kb on - strand, within MIT1002_00370 at 399.454 kb on + strand, within MIT1002_00370 at 399.460 kb on + strand, within MIT1002_00370 at 399.460 kb on - strand, within MIT1002_00370 at 399.469 kb on + strand, within MIT1002_00370 at 399.469 kb on + strand, within MIT1002_00370 at 399.477 kb on - strand, within MIT1002_00370 at 399.495 kb on + strand, within MIT1002_00370 at 399.555 kb on + strand, within MIT1002_00370 at 399.578 kb on - strand, within MIT1002_00370 at 399.582 kb on + strand, within MIT1002_00370 at 399.660 kb on + strand, within MIT1002_00370 at 399.666 kb on + strand, within MIT1002_00370 at 399.668 kb on - strand, within MIT1002_00370 at 399.668 kb on - strand, within MIT1002_00370 at 399.715 kb on - strand, within MIT1002_00370 at 399.717 kb on + strand, within MIT1002_00370 at 399.717 kb on + strand, within MIT1002_00370 at 399.725 kb on - strand, within MIT1002_00370 at 399.725 kb on - strand, within MIT1002_00370 at 399.725 kb on - strand, within MIT1002_00370 at 399.725 kb on - strand, within MIT1002_00370 at 399.739 kb on + strand, within MIT1002_00370 at 399.747 kb on - strand, within MIT1002_00370 at 399.747 kb on - strand, within MIT1002_00370 at 399.751 kb on + strand, within MIT1002_00370 at 399.759 kb on - strand, within MIT1002_00370 at 399.812 kb on + strand, within MIT1002_00370 at 399.812 kb on + strand, within MIT1002_00370 at 399.820 kb on + strand, within MIT1002_00370 at 399.820 kb on - strand, within MIT1002_00370 at 399.820 kb on - strand, within MIT1002_00370 at 399.833 kb on + strand, within MIT1002_00370 at 399.841 kb on + strand, within MIT1002_00370 at 399.841 kb on + strand, within MIT1002_00370 at 399.841 kb on + strand, within MIT1002_00370 at 399.841 kb on + strand, within MIT1002_00370 at 399.841 kb on + strand, within MIT1002_00370 at 399.849 kb on - strand, within MIT1002_00370 at 399.887 kb on - strand, within MIT1002_00370 at 399.916 kb on - strand at 399.916 kb on - strand at 399.916 kb on - strand at 399.916 kb on - strand at 399.942 kb on - strand at 399.965 kb on + strand at 399.966 kb on + strand at 400.010 kb on + strand at 400.018 kb on - strand at 400.018 kb on - strand at 400.110 kb on + strand, within MIT1002_00371 at 400.167 kb on - strand, within MIT1002_00371 at 400.206 kb on - strand, within MIT1002_00371 at 400.220 kb on + strand, within MIT1002_00371 at 400.228 kb on + strand, within MIT1002_00371 at 400.236 kb on - strand, within MIT1002_00371 at 400.280 kb on + strand, within MIT1002_00371 at 400.280 kb on + strand, within MIT1002_00371 at 400.288 kb on + strand, within MIT1002_00371 at 400.324 kb on + strand, within MIT1002_00371 at 400.324 kb on + strand, within MIT1002_00371 at 400.324 kb on + strand, within MIT1002_00371 at 400.324 kb on + strand, within MIT1002_00371 at 400.324 kb on + strand, within MIT1002_00371 at 400.324 kb on + strand, within MIT1002_00371 at 400.330 kb on + strand, within MIT1002_00371 at 400.332 kb on - strand, within MIT1002_00371 at 400.332 kb on - strand, within MIT1002_00371 at 400.338 kb on - strand, within MIT1002_00371 at 400.343 kb on - strand, within MIT1002_00371 at 400.401 kb on + strand, within MIT1002_00371 at 400.409 kb on - strand, within MIT1002_00371 at 400.420 kb on + strand, within MIT1002_00371 at 400.424 kb on + strand, within MIT1002_00371 at 400.446 kb on - strand, within MIT1002_00371 at 400.464 kb on - strand, within MIT1002_00371 at 400.498 kb on + strand, within MIT1002_00371 at 400.527 kb on + strand, within MIT1002_00371 at 400.550 kb on + strand, within MIT1002_00371 at 400.550 kb on + strand, within MIT1002_00371 at 400.558 kb on - strand, within MIT1002_00371 at 400.697 kb on + strand, within MIT1002_00371 at 400.697 kb on + strand, within MIT1002_00371 at 400.697 kb on + strand, within MIT1002_00371 at 400.705 kb on - strand, within MIT1002_00371 at 400.705 kb on - strand, within MIT1002_00371 at 400.705 kb on - strand, within MIT1002_00371 at 400.727 kb on - strand, within MIT1002_00371 at 400.796 kb on + strand, within MIT1002_00371 at 400.817 kb on + strand, within MIT1002_00371 at 400.835 kb on - strand, within MIT1002_00371 at 400.867 kb on + strand, within MIT1002_00371 at 400.875 kb on - strand, within MIT1002_00371 at 400.885 kb on - strand, within MIT1002_00371 at 400.923 kb on + strand, within MIT1002_00371 at 400.961 kb on + strand, within MIT1002_00371 at 400.976 kb on - strand, within MIT1002_00371 at 401.049 kb on - strand at 401.089 kb on - strand at 401.096 kb on + strand at 401.143 kb on - strand at 401.166 kb on - strand at 401.180 kb on + strand at 401.501 kb on + strand at 401.519 kb on - strand at 401.553 kb on + strand at 401.561 kb on - strand at 401.621 kb on - strand at 401.779 kb on + strand at 401.780 kb on + strand at 401.813 kb on + strand at 401.824 kb on + strand at 401.900 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1 remove 398,987 - MIT1002_00369 0.74 -0.2 398,996 - MIT1002_00369 0.75 -0.3 399,090 - -0.6 399,095 - -0.2 399,143 + +0.1 399,143 + -1.6 399,143 + -0.1 399,143 + +0.3 399,143 + +0.0 399,143 + +0.2 399,143 + -0.9 399,143 + -1.6 399,143 + -2.2 399,143 + -0.1 399,143 + +0.3 399,143 + +0.2 399,143 + +0.2 399,143 + +0.0 399,143 + -0.3 399,143 + -0.1 399,151 - -0.8 399,151 - +0.2 399,151 - +0.9 399,151 - +1.9 399,151 - +1.0 399,151 - -1.8 399,151 - +1.5 399,151 - +0.1 399,151 - -0.3 399,151 - +0.2 399,151 - +0.2 399,151 - +0.1 399,151 - +0.8 399,151 - +0.6 399,151 - +0.1 399,151 - +2.1 399,151 - +1.1 399,179 + +0.1 399,179 + -0.1 399,181 + +0.0 399,182 - -0.6 399,203 + +0.0 399,224 - -1.4 399,307 + MIT1002_00370 0.12 +0.2 399,325 - MIT1002_00370 0.14 +0.3 399,380 + MIT1002_00370 0.22 -0.3 399,388 - MIT1002_00370 0.23 +1.0 399,423 - MIT1002_00370 0.27 +0.2 399,454 + MIT1002_00370 0.31 +0.0 399,460 + MIT1002_00370 0.32 -0.0 399,460 - MIT1002_00370 0.32 +1.6 399,469 + MIT1002_00370 0.33 -0.2 399,469 + MIT1002_00370 0.33 -0.2 399,477 - MIT1002_00370 0.34 +1.7 399,495 + MIT1002_00370 0.37 -0.7 399,555 + MIT1002_00370 0.44 -0.2 399,578 - MIT1002_00370 0.47 -0.4 399,582 + MIT1002_00370 0.48 -1.9 399,660 + MIT1002_00370 0.58 +0.5 399,666 + MIT1002_00370 0.59 +0.2 399,668 - MIT1002_00370 0.59 +0.7 399,668 - MIT1002_00370 0.59 -0.3 399,715 - MIT1002_00370 0.65 -1.3 399,717 + MIT1002_00370 0.65 +0.4 399,717 + MIT1002_00370 0.65 +0.7 399,725 - MIT1002_00370 0.67 -0.4 399,725 - MIT1002_00370 0.67 -0.4 399,725 - MIT1002_00370 0.67 +0.4 399,725 - MIT1002_00370 0.67 +0.5 399,739 + MIT1002_00370 0.68 -0.2 399,747 - MIT1002_00370 0.69 -1.3 399,747 - MIT1002_00370 0.69 -1.1 399,751 + MIT1002_00370 0.70 -0.4 399,759 - MIT1002_00370 0.71 -1.2 399,812 + MIT1002_00370 0.78 +0.3 399,812 + MIT1002_00370 0.78 +0.4 399,820 + MIT1002_00370 0.79 +0.0 399,820 - MIT1002_00370 0.79 -0.3 399,820 - MIT1002_00370 0.79 -0.2 399,833 + MIT1002_00370 0.81 -2.7 399,841 + MIT1002_00370 0.82 +0.8 399,841 + MIT1002_00370 0.82 -0.8 399,841 + MIT1002_00370 0.82 -0.6 399,841 + MIT1002_00370 0.82 +1.0 399,841 + MIT1002_00370 0.82 +0.2 399,849 - MIT1002_00370 0.83 -0.9 399,887 - MIT1002_00370 0.88 -0.2 399,916 - -0.9 399,916 - -0.2 399,916 - -1.0 399,916 - +1.3 399,942 - -0.5 399,965 + +0.1 399,966 + +0.7 400,010 + +1.0 400,018 - -0.1 400,018 - -0.4 400,110 + MIT1002_00371 0.11 +0.7 400,167 - MIT1002_00371 0.16 +0.2 400,206 - MIT1002_00371 0.20 -0.0 400,220 + MIT1002_00371 0.21 -0.5 400,228 + MIT1002_00371 0.22 -0.4 400,236 - MIT1002_00371 0.22 -0.6 400,280 + MIT1002_00371 0.26 -1.4 400,280 + MIT1002_00371 0.26 +0.5 400,288 + MIT1002_00371 0.27 -0.4 400,324 + MIT1002_00371 0.30 +1.0 400,324 + MIT1002_00371 0.30 -1.2 400,324 + MIT1002_00371 0.30 +0.1 400,324 + MIT1002_00371 0.30 +0.2 400,324 + MIT1002_00371 0.30 -2.2 400,324 + MIT1002_00371 0.30 +0.6 400,330 + MIT1002_00371 0.31 +0.2 400,332 - MIT1002_00371 0.31 -0.4 400,332 - MIT1002_00371 0.31 -0.4 400,338 - MIT1002_00371 0.31 +0.1 400,343 - MIT1002_00371 0.32 +0.7 400,401 + MIT1002_00371 0.37 +0.4 400,409 - MIT1002_00371 0.38 -0.3 400,420 + MIT1002_00371 0.38 +0.4 400,424 + MIT1002_00371 0.39 -0.5 400,446 - MIT1002_00371 0.41 -0.2 400,464 - MIT1002_00371 0.42 +0.9 400,498 + MIT1002_00371 0.45 +0.2 400,527 + MIT1002_00371 0.48 -0.1 400,550 + MIT1002_00371 0.50 -0.5 400,550 + MIT1002_00371 0.50 -0.5 400,558 - MIT1002_00371 0.50 -0.5 400,697 + MIT1002_00371 0.63 -0.8 400,697 + MIT1002_00371 0.63 -0.1 400,697 + MIT1002_00371 0.63 +0.5 400,705 - MIT1002_00371 0.63 +0.7 400,705 - MIT1002_00371 0.63 +0.1 400,705 - MIT1002_00371 0.63 -0.2 400,727 - MIT1002_00371 0.65 -0.3 400,796 + MIT1002_00371 0.71 -0.1 400,817 + MIT1002_00371 0.73 +0.0 400,835 - MIT1002_00371 0.75 +0.4 400,867 + MIT1002_00371 0.77 -2.5 400,875 - MIT1002_00371 0.78 -1.8 400,885 - MIT1002_00371 0.79 -0.4 400,923 + MIT1002_00371 0.82 +0.7 400,961 + MIT1002_00371 0.86 -0.9 400,976 - MIT1002_00371 0.87 +0.6 401,049 - -0.8 401,089 - +0.1 401,096 + -1.8 401,143 - -0.8 401,166 - +1.0 401,180 + -1.0 401,501 + +0.5 401,519 - +0.4 401,553 + -0.3 401,561 - +0.6 401,621 - -0.1 401,779 + -1.2 401,780 + +0.4 401,813 + +0.5 401,824 + -1.6 401,900 + MIT1002_00372 0.10 +0.8 401,985 + MIT1002_00372 0.16 +0.0 401,985 + MIT1002_00372 0.16 +1.1 401,985 + MIT1002_00372 0.16 +0.8 401,985 + MIT1002_00372 0.16 +0.5 401,985 + MIT1002_00372 0.16 +0.2 401,985 + MIT1002_00372 0.16 -0.3
Or see this region's nucleotide sequence