Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00242 and MIT1002_00243 are separated by 233 nucleotides MIT1002_00243 and MIT1002_00244 are separated by 177 nucleotides
MIT1002_00242: MIT1002_00242 - hypothetical protein, at 270,960 to 271,172
_00242
MIT1002_00243: MIT1002_00243 - Protein of unknown function, DUF, at 271,406 to 271,897
_00243
MIT1002_00244: MIT1002_00244 - Methionyl-tRNA formyltransferase, at 272,075 to 272,911
_00244
Position (kb) 271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 270.414 kb on - strand at 270.414 kb on - strand at 270.432 kb on + strand at 270.437 kb on + strand at 270.441 kb on + strand at 270.441 kb on + strand at 270.441 kb on + strand at 270.441 kb on + strand at 270.441 kb on + strand at 270.441 kb on + strand at 270.441 kb on + strand at 270.445 kb on - strand at 270.445 kb on - strand at 270.448 kb on - strand at 270.448 kb on - strand at 270.449 kb on - strand at 270.449 kb on - strand at 270.449 kb on - strand at 270.449 kb on - strand at 270.449 kb on - strand at 270.487 kb on + strand at 270.562 kb on - strand at 270.570 kb on - strand at 270.587 kb on - strand at 270.643 kb on + strand at 270.648 kb on + strand at 270.659 kb on + strand at 270.667 kb on - strand at 270.706 kb on + strand at 270.706 kb on + strand at 270.706 kb on + strand at 270.714 kb on - strand at 270.714 kb on - strand at 270.776 kb on + strand at 270.776 kb on + strand at 270.776 kb on + strand at 270.776 kb on + strand at 270.776 kb on + strand at 270.776 kb on + strand at 270.776 kb on + strand at 270.776 kb on + strand at 270.776 kb on + strand at 270.776 kb on + strand at 270.784 kb on - strand at 270.784 kb on - strand at 270.784 kb on - strand at 270.784 kb on - strand at 270.784 kb on - strand at 270.784 kb on - strand at 270.784 kb on - strand at 270.784 kb on - strand at 270.784 kb on - strand at 270.784 kb on - strand at 270.786 kb on + strand at 270.794 kb on - strand at 270.828 kb on + strand at 270.896 kb on + strand at 270.902 kb on + strand at 270.965 kb on - strand at 270.989 kb on - strand, within MIT1002_00242 at 271.029 kb on + strand, within MIT1002_00242 at 271.097 kb on - strand, within MIT1002_00242 at 271.296 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.314 kb on - strand at 271.314 kb on - strand at 271.314 kb on - strand at 271.314 kb on - strand at 271.371 kb on - strand at 271.434 kb on + strand at 271.556 kb on - strand, within MIT1002_00243 at 271.580 kb on - strand, within MIT1002_00243 at 271.592 kb on - strand, within MIT1002_00243 at 271.641 kb on + strand, within MIT1002_00243 at 271.699 kb on - strand, within MIT1002_00243 at 271.738 kb on + strand, within MIT1002_00243 at 271.849 kb on + strand at 271.983 kb on - strand at 272.018 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.030 kb on + strand at 272.030 kb on + strand at 272.030 kb on + strand at 272.030 kb on + strand at 272.043 kb on + strand at 272.060 kb on - strand at 272.060 kb on - strand at 272.060 kb on - strand at 272.070 kb on - strand at 272.071 kb on - strand at 272.261 kb on - strand, within MIT1002_00244 at 272.273 kb on + strand, within MIT1002_00244 at 272.293 kb on - strand, within MIT1002_00244 at 272.307 kb on + strand, within MIT1002_00244 at 272.371 kb on + strand, within MIT1002_00244 at 272.679 kb on + strand, within MIT1002_00244
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1 remove 270,414 - -1.1 270,414 - +0.2 270,432 + +1.0 270,437 + -0.6 270,441 + -0.7 270,441 + -1.3 270,441 + +0.0 270,441 + +0.9 270,441 + +0.6 270,441 + +1.6 270,441 + +0.4 270,445 - -0.1 270,445 - +0.2 270,448 - -0.1 270,448 - -0.2 270,449 - -1.0 270,449 - -0.3 270,449 - -0.1 270,449 - +1.0 270,449 - -2.2 270,487 + +0.4 270,562 - +0.0 270,570 - +1.6 270,587 - +0.7 270,643 + -0.9 270,648 + -1.4 270,659 + +0.0 270,667 - -3.1 270,706 + +1.0 270,706 + -0.3 270,706 + +0.3 270,714 - +0.3 270,714 - +1.0 270,776 + +0.1 270,776 + +0.0 270,776 + +0.2 270,776 + -0.2 270,776 + -0.9 270,776 + +1.7 270,776 + -0.8 270,776 + -1.6 270,776 + +0.5 270,776 + +0.3 270,784 - +2.4 270,784 - -0.9 270,784 - +0.9 270,784 - -1.4 270,784 - -0.2 270,784 - -0.0 270,784 - -1.8 270,784 - -2.6 270,784 - -0.9 270,784 - +0.0 270,786 + -0.5 270,794 - +2.2 270,828 + -0.9 270,896 + +0.2 270,902 + -1.2 270,965 - +1.2 270,989 - MIT1002_00242 0.14 +0.4 271,029 + MIT1002_00242 0.32 +0.3 271,097 - MIT1002_00242 0.64 -0.2 271,296 + -0.8 271,306 + -1.4 271,306 + -0.4 271,306 + -0.0 271,306 + +2.0 271,306 + +2.0 271,306 + -0.5 271,306 + +0.4 271,306 + -0.2 271,306 + -0.3 271,314 - -0.4 271,314 - -0.6 271,314 - -0.5 271,314 - -0.4 271,371 - +0.3 271,434 + +0.7 271,556 - MIT1002_00243 0.30 -1.4 271,580 - MIT1002_00243 0.35 -0.8 271,592 - MIT1002_00243 0.38 -0.6 271,641 + MIT1002_00243 0.48 +0.1 271,699 - MIT1002_00243 0.60 -1.2 271,738 + MIT1002_00243 0.67 +0.5 271,849 + +0.1 271,983 - +0.1 272,018 + +0.9 272,028 + +0.3 272,028 + -0.9 272,028 + -1.4 272,028 + -0.5 272,028 + +0.5 272,028 + +1.0 272,028 + -1.2 272,028 + -0.4 272,028 + +0.2 272,028 + +0.1 272,028 + +0.2 272,028 + +1.4 272,028 + -0.2 272,028 + -0.1 272,028 + +0.2 272,028 + +0.0 272,030 + -1.3 272,030 + -1.0 272,030 + -0.1 272,030 + +0.1 272,043 + -0.2 272,060 - -1.1 272,060 - -0.8 272,060 - -0.2 272,070 - +0.4 272,071 - -0.6 272,261 - MIT1002_00244 0.22 +2.3 272,273 + MIT1002_00244 0.24 +0.2 272,293 - MIT1002_00244 0.26 -0.0 272,307 + MIT1002_00244 0.28 +0.1 272,371 + MIT1002_00244 0.35 -0.8 272,679 + MIT1002_00244 0.72 -0.2
Or see this region's nucleotide sequence