Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00235 and MIT1002_00236 are separated by 149 nucleotides MIT1002_00236 and MIT1002_00237 overlap by 1 nucleotides MIT1002_00237 and MIT1002_00238 are separated by 91 nucleotides
MIT1002_00235: MIT1002_00235 - Glycogen synthase, at 264,019 to 265,443
_00235
MIT1002_00236: MIT1002_00236 - Ribosomal RNA small subunit methyltransferase C, at 265,593 to 266,675
_00236
MIT1002_00237: MIT1002_00237 - tRNA (guanine-N(7)-)-methyltransferase, at 266,675 to 267,394
_00237
MIT1002_00238: MIT1002_00238 - acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase, at 267,486 to 268,190
_00238
Position (kb) 265
266
267 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 264.759 kb on + strand, within MIT1002_00235 at 264.769 kb on + strand, within MIT1002_00235 at 265.173 kb on + strand, within MIT1002_00235 at 265.203 kb on - strand, within MIT1002_00235 at 265.438 kb on + strand at 265.457 kb on - strand at 265.468 kb on + strand at 265.484 kb on - strand at 265.628 kb on + strand at 265.636 kb on + strand at 265.638 kb on + strand at 265.638 kb on + strand at 265.638 kb on + strand at 265.639 kb on + strand at 265.639 kb on + strand at 265.644 kb on - strand at 265.646 kb on - strand at 265.646 kb on - strand at 265.646 kb on - strand at 265.646 kb on - strand at 265.646 kb on - strand at 265.646 kb on - strand at 265.646 kb on - strand at 265.647 kb on - strand at 265.648 kb on + strand at 265.656 kb on - strand at 265.670 kb on + strand at 265.670 kb on + strand at 265.673 kb on - strand at 265.678 kb on - strand at 265.706 kb on + strand, within MIT1002_00236 at 265.709 kb on - strand, within MIT1002_00236 at 265.714 kb on - strand, within MIT1002_00236 at 265.714 kb on - strand, within MIT1002_00236 at 265.765 kb on - strand, within MIT1002_00236 at 265.774 kb on + strand, within MIT1002_00236 at 265.852 kb on + strand, within MIT1002_00236 at 265.852 kb on + strand, within MIT1002_00236 at 265.860 kb on - strand, within MIT1002_00236 at 265.860 kb on - strand, within MIT1002_00236 at 265.860 kb on - strand, within MIT1002_00236 at 265.880 kb on + strand, within MIT1002_00236 at 265.880 kb on + strand, within MIT1002_00236 at 265.890 kb on - strand, within MIT1002_00236 at 265.892 kb on + strand, within MIT1002_00236 at 265.895 kb on - strand, within MIT1002_00236 at 265.895 kb on - strand, within MIT1002_00236 at 265.900 kb on - strand, within MIT1002_00236 at 265.900 kb on - strand, within MIT1002_00236 at 265.900 kb on - strand, within MIT1002_00236 at 266.023 kb on - strand, within MIT1002_00236 at 266.031 kb on - strand, within MIT1002_00236 at 266.115 kb on - strand, within MIT1002_00236 at 266.115 kb on - strand, within MIT1002_00236 at 266.166 kb on + strand, within MIT1002_00236 at 266.202 kb on - strand, within MIT1002_00236 at 266.235 kb on + strand, within MIT1002_00236 at 266.269 kb on - strand, within MIT1002_00236 at 266.410 kb on - strand, within MIT1002_00236 at 266.499 kb on + strand, within MIT1002_00236 at 266.507 kb on + strand, within MIT1002_00236 at 266.515 kb on - strand, within MIT1002_00236 at 266.564 kb on + strand, within MIT1002_00236 at 266.564 kb on + strand, within MIT1002_00236 at 266.564 kb on + strand, within MIT1002_00236 at 266.564 kb on + strand, within MIT1002_00236 at 266.572 kb on - strand at 266.596 kb on - strand at 266.655 kb on + strand at 266.655 kb on + strand at 266.655 kb on + strand at 266.655 kb on + strand at 266.655 kb on + strand at 266.673 kb on - strand at 266.767 kb on - strand, within MIT1002_00237 at 266.793 kb on + strand, within MIT1002_00237 at 266.801 kb on - strand, within MIT1002_00237 at 266.839 kb on - strand, within MIT1002_00237 at 266.841 kb on + strand, within MIT1002_00237 at 266.843 kb on + strand, within MIT1002_00237 at 266.942 kb on - strand, within MIT1002_00237 at 267.053 kb on + strand, within MIT1002_00237 at 267.056 kb on + strand, within MIT1002_00237 at 267.084 kb on - strand, within MIT1002_00237 at 267.097 kb on + strand, within MIT1002_00237 at 267.588 kb on - strand, within MIT1002_00238 at 267.593 kb on - strand, within MIT1002_00238 at 267.646 kb on + strand, within MIT1002_00238
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 1 remove 264,759 + MIT1002_00235 0.52 -0.8 264,769 + MIT1002_00235 0.53 -1.3 265,173 + MIT1002_00235 0.81 -4.4 265,203 - MIT1002_00235 0.83 -0.3 265,438 + -1.4 265,457 - +0.7 265,468 + +0.8 265,484 - -4.0 265,628 + +0.1 265,636 + -0.2 265,638 + +0.4 265,638 + -1.2 265,638 + -2.3 265,639 + -0.3 265,639 + -0.4 265,644 - -0.5 265,646 - +0.6 265,646 - +1.2 265,646 - +1.0 265,646 - +0.3 265,646 - +0.2 265,646 - -0.3 265,646 - -1.4 265,647 - -1.3 265,648 + +0.8 265,656 - -0.7 265,670 + -0.4 265,670 + +0.2 265,673 - -1.2 265,678 - -0.1 265,706 + MIT1002_00236 0.10 -0.4 265,709 - MIT1002_00236 0.11 -0.3 265,714 - MIT1002_00236 0.11 +1.3 265,714 - MIT1002_00236 0.11 +0.6 265,765 - MIT1002_00236 0.16 -1.2 265,774 + MIT1002_00236 0.17 -0.1 265,852 + MIT1002_00236 0.24 -0.7 265,852 + MIT1002_00236 0.24 -3.3 265,860 - MIT1002_00236 0.25 +0.3 265,860 - MIT1002_00236 0.25 -0.8 265,860 - MIT1002_00236 0.25 -0.6 265,880 + MIT1002_00236 0.27 -0.2 265,880 + MIT1002_00236 0.27 -0.6 265,890 - MIT1002_00236 0.27 -1.7 265,892 + MIT1002_00236 0.28 -0.6 265,895 - MIT1002_00236 0.28 -0.4 265,895 - MIT1002_00236 0.28 +0.6 265,900 - MIT1002_00236 0.28 +1.0 265,900 - MIT1002_00236 0.28 -0.6 265,900 - MIT1002_00236 0.28 -1.2 266,023 - MIT1002_00236 0.40 +0.2 266,031 - MIT1002_00236 0.40 -1.4 266,115 - MIT1002_00236 0.48 -1.8 266,115 - MIT1002_00236 0.48 +0.8 266,166 + MIT1002_00236 0.53 +0.2 266,202 - MIT1002_00236 0.56 -0.1 266,235 + MIT1002_00236 0.59 +0.2 266,269 - MIT1002_00236 0.62 -0.1 266,410 - MIT1002_00236 0.75 -2.0 266,499 + MIT1002_00236 0.84 +1.0 266,507 + MIT1002_00236 0.84 -1.0 266,515 - MIT1002_00236 0.85 -0.8 266,564 + MIT1002_00236 0.90 +1.4 266,564 + MIT1002_00236 0.90 +0.6 266,564 + MIT1002_00236 0.90 -1.1 266,564 + MIT1002_00236 0.90 +0.1 266,572 - -0.1 266,596 - -1.7 266,655 + +2.7 266,655 + +0.9 266,655 + +0.5 266,655 + -0.1 266,655 + +0.0 266,673 - -2.4 266,767 - MIT1002_00237 0.13 +1.3 266,793 + MIT1002_00237 0.16 +0.2 266,801 - MIT1002_00237 0.17 +1.5 266,839 - MIT1002_00237 0.23 +0.9 266,841 + MIT1002_00237 0.23 -1.1 266,843 + MIT1002_00237 0.23 +0.2 266,942 - MIT1002_00237 0.37 +0.6 267,053 + MIT1002_00237 0.53 -1.1 267,056 + MIT1002_00237 0.53 +0.7 267,084 - MIT1002_00237 0.57 +1.5 267,097 + MIT1002_00237 0.59 +1.3 267,588 - MIT1002_00238 0.14 +0.8 267,593 - MIT1002_00238 0.15 -2.4 267,646 + MIT1002_00238 0.23 -0.8
Or see this region's nucleotide sequence