Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS43460 and QEN71_RS43465 are separated by 313 nucleotides QEN71_RS43465 and QEN71_RS43470 are separated by 46 nucleotides QEN71_RS43470 and QEN71_RS43475 are separated by 490 nucleotides
QEN71_RS43460: QEN71_RS43460 - hypothetical protein, at 181,295 to 181,615
_RS43460
QEN71_RS43465: QEN71_RS43465 - hypothetical protein, at 181,929 to 182,222
_RS43465
QEN71_RS43470: QEN71_RS43470 - hypothetical protein, at 182,269 to 182,499
_RS43470
QEN71_RS43475: QEN71_RS43475 - IS5 family transposase, at 182,990 to 183,802
_RS43475
Position (kb) 182
183 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 181.407 kb on - strand, within QEN71_RS43460 at 181.560 kb on + strand, within QEN71_RS43460 at 181.560 kb on + strand, within QEN71_RS43460 at 181.560 kb on + strand, within QEN71_RS43460 at 181.561 kb on - strand, within QEN71_RS43460 at 181.561 kb on - strand, within QEN71_RS43460 at 181.785 kb on - strand at 181.863 kb on - strand at 181.873 kb on + strand at 181.873 kb on + strand at 181.874 kb on - strand at 181.874 kb on - strand at 181.874 kb on - strand at 181.877 kb on + strand at 181.877 kb on + strand at 181.878 kb on - strand at 181.878 kb on - strand at 181.878 kb on - strand at 182.053 kb on + strand, within QEN71_RS43465 at 182.054 kb on - strand, within QEN71_RS43465 at 182.182 kb on + strand, within QEN71_RS43465 at 182.183 kb on - strand, within QEN71_RS43465 at 182.286 kb on + strand at 182.286 kb on + strand at 182.298 kb on - strand, within QEN71_RS43470 at 182.304 kb on + strand, within QEN71_RS43470 at 182.366 kb on + strand, within QEN71_RS43470 at 182.367 kb on - strand, within QEN71_RS43470 at 182.407 kb on - strand, within QEN71_RS43470 at 182.455 kb on - strand, within QEN71_RS43470 at 182.455 kb on - strand, within QEN71_RS43470 at 182.571 kb on + strand at 182.571 kb on + strand at 182.571 kb on + strand at 182.572 kb on - strand at 182.572 kb on - strand at 182.572 kb on - strand at 182.591 kb on + strand at 182.591 kb on + strand at 182.687 kb on + strand at 182.687 kb on + strand at 182.688 kb on - strand at 182.736 kb on + strand at 182.737 kb on - strand at 182.778 kb on - strand at 182.778 kb on - strand at 182.793 kb on + strand at 182.816 kb on + strand at 182.817 kb on - strand at 182.830 kb on + strand at 182.875 kb on + strand at 182.876 kb on - strand at 182.876 kb on - strand at 182.882 kb on + strand at 182.882 kb on + strand at 182.882 kb on + strand at 182.883 kb on - strand at 182.883 kb on - strand at 182.883 kb on - strand at 182.883 kb on - strand at 182.883 kb on - strand at 182.886 kb on + strand at 182.909 kb on + strand at 182.982 kb on - strand at 182.992 kb on - strand at 182.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 181,407 - QEN71_RS43460 0.35 +3.1 181,560 + QEN71_RS43460 0.83 -0.7 181,560 + QEN71_RS43460 0.83 -0.1 181,560 + QEN71_RS43460 0.83 -0.4 181,561 - QEN71_RS43460 0.83 -0.1 181,561 - QEN71_RS43460 0.83 -0.6 181,785 - +0.1 181,863 - -0.5 181,873 + +0.4 181,873 + -0.5 181,874 - -0.1 181,874 - -0.5 181,874 - -1.1 181,877 + +0.5 181,877 + -0.8 181,878 - -1.3 181,878 - -0.9 181,878 - +0.1 182,053 + QEN71_RS43465 0.42 -0.8 182,054 - QEN71_RS43465 0.43 -0.6 182,182 + QEN71_RS43465 0.86 -0.1 182,183 - QEN71_RS43465 0.86 -0.2 182,286 + +0.3 182,286 + -0.5 182,298 - QEN71_RS43470 0.13 -1.5 182,304 + QEN71_RS43470 0.15 -0.6 182,366 + QEN71_RS43470 0.42 -1.4 182,367 - QEN71_RS43470 0.42 -0.1 182,407 - QEN71_RS43470 0.60 +0.2 182,455 - QEN71_RS43470 0.81 -0.1 182,455 - QEN71_RS43470 0.81 +0.6 182,571 + -1.9 182,571 + +0.1 182,571 + +0.1 182,572 - -0.2 182,572 - -0.2 182,572 - -1.9 182,591 + -0.2 182,591 + -0.2 182,687 + +0.6 182,687 + -0.3 182,688 - +0.9 182,736 + -1.2 182,737 - +1.9 182,778 - +1.2 182,778 - -1.4 182,793 + -0.3 182,816 + -1.0 182,817 - -0.7 182,830 + -0.2 182,875 + +1.6 182,876 - -0.2 182,876 - -0.3 182,882 + +0.3 182,882 + +1.2 182,882 + -0.3 182,883 - -0.2 182,883 - +1.3 182,883 - -0.1 182,883 - -0.1 182,883 - -0.4 182,886 + +0.1 182,909 + -0.4 182,982 - -0.4 182,992 - -0.9 182,992 - -0.5
Or see this region's nucleotide sequence