Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS34150 and QEN71_RS34155 are separated by 21 nucleotides QEN71_RS34155 and QEN71_RS34160 are separated by 138 nucleotides
QEN71_RS34150: QEN71_RS34150 - hypothetical protein, at 976,943 to 978,499
_RS34150
QEN71_RS34155: QEN71_RS34155 - heterodisulfide reductase-related iron-sulfur binding cluster, at 978,521 to 980,683
_RS34155
QEN71_RS34160: QEN71_RS34160 - FAD-dependent oxidoreductase, at 980,822 to 983,014
_RS34160
Position (kb) 978
979
980
981 Strain fitness (log2 ratio) -2
-1
0
1 at 977.942 kb on + strand, within QEN71_RS34150 at 977.990 kb on + strand, within QEN71_RS34150 at 977.991 kb on - strand, within QEN71_RS34150 at 978.267 kb on + strand, within QEN71_RS34150 at 978.268 kb on - strand, within QEN71_RS34150 at 978.358 kb on - strand at 978.508 kb on + strand at 978.508 kb on + strand at 978.508 kb on + strand at 978.509 kb on - strand at 978.512 kb on + strand at 978.512 kb on + strand at 978.512 kb on + strand at 978.513 kb on - strand at 978.513 kb on - strand at 978.634 kb on - strand at 978.880 kb on - strand, within QEN71_RS34155 at 978.993 kb on + strand, within QEN71_RS34155 at 978.994 kb on - strand, within QEN71_RS34155 at 979.050 kb on + strand, within QEN71_RS34155 at 979.051 kb on - strand, within QEN71_RS34155 at 979.887 kb on + strand, within QEN71_RS34155 at 980.241 kb on + strand, within QEN71_RS34155 at 980.241 kb on + strand, within QEN71_RS34155 at 980.242 kb on - strand, within QEN71_RS34155 at 980.242 kb on - strand, within QEN71_RS34155 at 980.301 kb on + strand, within QEN71_RS34155 at 980.352 kb on + strand, within QEN71_RS34155 at 980.599 kb on - strand at 980.607 kb on - strand at 980.823 kb on + strand at 980.832 kb on + strand at 980.895 kb on + strand at 980.896 kb on - strand at 980.896 kb on - strand at 981.166 kb on - strand, within QEN71_RS34160 at 981.292 kb on - strand, within QEN71_RS34160 at 981.312 kb on + strand, within QEN71_RS34160 at 981.313 kb on - strand, within QEN71_RS34160 at 981.397 kb on - strand, within QEN71_RS34160 at 981.631 kb on + strand, within QEN71_RS34160
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 977,942 + QEN71_RS34150 0.64 -0.5 977,990 + QEN71_RS34150 0.67 +0.7 977,991 - QEN71_RS34150 0.67 -0.0 978,267 + QEN71_RS34150 0.85 -0.2 978,268 - QEN71_RS34150 0.85 -0.5 978,358 - -0.6 978,508 + -1.1 978,508 + +0.9 978,508 + -0.0 978,509 - +0.2 978,512 + +0.8 978,512 + +0.3 978,512 + -0.4 978,513 - +0.4 978,513 - -1.0 978,634 - +0.5 978,880 - QEN71_RS34155 0.17 +0.3 978,993 + QEN71_RS34155 0.22 -2.4 978,994 - QEN71_RS34155 0.22 +0.0 979,050 + QEN71_RS34155 0.24 +0.3 979,051 - QEN71_RS34155 0.25 -1.6 979,887 + QEN71_RS34155 0.63 -0.4 980,241 + QEN71_RS34155 0.80 -0.2 980,241 + QEN71_RS34155 0.80 -1.8 980,242 - QEN71_RS34155 0.80 +1.0 980,242 - QEN71_RS34155 0.80 +0.8 980,301 + QEN71_RS34155 0.82 +0.1 980,352 + QEN71_RS34155 0.85 +0.0 980,599 - -0.6 980,607 - +1.7 980,823 + -0.0 980,832 + -0.0 980,895 + +0.8 980,896 - -1.2 980,896 - +0.1 981,166 - QEN71_RS34160 0.16 -0.9 981,292 - QEN71_RS34160 0.21 -0.2 981,312 + QEN71_RS34160 0.22 -0.2 981,313 - QEN71_RS34160 0.22 -1.0 981,397 - QEN71_RS34160 0.26 -0.0 981,631 + QEN71_RS34160 0.37 +0.1
Or see this region's nucleotide sequence