Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33415 and QEN71_RS33420 are separated by 96 nucleotides QEN71_RS33420 and QEN71_RS33425 are separated by 41 nucleotides QEN71_RS33425 and QEN71_RS33430 are separated by 87 nucleotides QEN71_RS33430 and QEN71_RS33435 are separated by 300 nucleotides
QEN71_RS33415: QEN71_RS33415 - chemotaxis protein CheB, at 817,616 to 818,608
_RS33415
QEN71_RS33420: QEN71_RS33420 - SDR family NAD(P)-dependent oxidoreductase, at 818,705 to 819,490
_RS33420
QEN71_RS33425: QEN71_RS33425 - hypothetical protein, at 819,532 to 819,702
_RS33425
QEN71_RS33430: QEN71_RS33430 - hypothetical protein, at 819,790 to 820,032
_RS33430
QEN71_RS33435: QEN71_RS33435 - hypothetical protein, at 820,333 to 820,635
_RS33435
Position (kb) 818
819
820 Strain fitness (log2 ratio) -2
-1
0
1
2 at 818.106 kb on + strand, within QEN71_RS33415 at 818.106 kb on + strand, within QEN71_RS33415 at 818.106 kb on + strand, within QEN71_RS33415 at 818.106 kb on + strand, within QEN71_RS33415 at 818.106 kb on + strand, within QEN71_RS33415 at 818.106 kb on + strand, within QEN71_RS33415 at 818.106 kb on + strand, within QEN71_RS33415 at 818.107 kb on - strand, within QEN71_RS33415 at 818.107 kb on - strand, within QEN71_RS33415 at 818.107 kb on - strand, within QEN71_RS33415 at 818.107 kb on - strand, within QEN71_RS33415 at 818.169 kb on - strand, within QEN71_RS33415 at 818.169 kb on - strand, within QEN71_RS33415 at 818.169 kb on - strand, within QEN71_RS33415 at 818.240 kb on + strand, within QEN71_RS33415 at 818.241 kb on - strand, within QEN71_RS33415 at 818.388 kb on + strand, within QEN71_RS33415 at 818.388 kb on + strand, within QEN71_RS33415 at 818.388 kb on + strand, within QEN71_RS33415 at 818.388 kb on + strand, within QEN71_RS33415 at 818.388 kb on + strand, within QEN71_RS33415 at 818.406 kb on + strand, within QEN71_RS33415 at 818.406 kb on + strand, within QEN71_RS33415 at 818.406 kb on + strand, within QEN71_RS33415 at 818.407 kb on - strand, within QEN71_RS33415 at 818.407 kb on - strand, within QEN71_RS33415 at 818.407 kb on - strand, within QEN71_RS33415 at 818.591 kb on - strand at 818.591 kb on - strand at 818.627 kb on + strand at 818.627 kb on + strand at 818.627 kb on + strand at 818.628 kb on - strand at 818.633 kb on + strand at 818.633 kb on + strand at 818.634 kb on - strand at 818.634 kb on - strand at 818.634 kb on - strand at 818.634 kb on - strand at 818.641 kb on - strand at 818.641 kb on - strand at 818.641 kb on - strand at 818.641 kb on - strand at 818.706 kb on + strand at 818.760 kb on + strand at 818.761 kb on - strand at 818.761 kb on - strand at 818.761 kb on - strand at 818.761 kb on - strand at 818.857 kb on - strand, within QEN71_RS33420 at 819.021 kb on + strand, within QEN71_RS33420 at 819.022 kb on - strand, within QEN71_RS33420 at 819.120 kb on + strand, within QEN71_RS33420 at 819.120 kb on + strand, within QEN71_RS33420 at 819.120 kb on + strand, within QEN71_RS33420 at 819.120 kb on + strand, within QEN71_RS33420 at 819.121 kb on - strand, within QEN71_RS33420 at 819.121 kb on - strand, within QEN71_RS33420 at 819.121 kb on - strand, within QEN71_RS33420 at 819.121 kb on - strand, within QEN71_RS33420 at 819.135 kb on + strand, within QEN71_RS33420 at 819.135 kb on + strand, within QEN71_RS33420 at 819.135 kb on + strand, within QEN71_RS33420 at 819.135 kb on + strand, within QEN71_RS33420 at 819.135 kb on + strand, within QEN71_RS33420 at 819.135 kb on + strand, within QEN71_RS33420 at 819.135 kb on + strand, within QEN71_RS33420 at 819.135 kb on + strand, within QEN71_RS33420 at 819.135 kb on + strand, within QEN71_RS33420 at 819.136 kb on - strand, within QEN71_RS33420 at 819.136 kb on - strand, within QEN71_RS33420 at 819.136 kb on - strand, within QEN71_RS33420 at 819.136 kb on - strand, within QEN71_RS33420 at 819.136 kb on - strand, within QEN71_RS33420 at 819.136 kb on - strand, within QEN71_RS33420 at 819.136 kb on - strand, within QEN71_RS33420 at 819.136 kb on - strand, within QEN71_RS33420 at 819.208 kb on + strand, within QEN71_RS33420 at 819.208 kb on + strand, within QEN71_RS33420 at 819.208 kb on + strand, within QEN71_RS33420 at 819.209 kb on - strand, within QEN71_RS33420 at 819.470 kb on + strand at 819.470 kb on + strand at 819.471 kb on - strand at 819.471 kb on - strand at 819.628 kb on + strand, within QEN71_RS33425 at 819.628 kb on + strand, within QEN71_RS33425 at 819.628 kb on + strand, within QEN71_RS33425 at 819.628 kb on + strand, within QEN71_RS33425 at 819.628 kb on + strand, within QEN71_RS33425 at 819.628 kb on + strand, within QEN71_RS33425 at 819.628 kb on + strand, within QEN71_RS33425 at 819.628 kb on + strand, within QEN71_RS33425 at 819.629 kb on - strand, within QEN71_RS33425 at 819.629 kb on - strand, within QEN71_RS33425 at 819.629 kb on - strand, within QEN71_RS33425 at 819.629 kb on - strand, within QEN71_RS33425 at 819.759 kb on + strand at 819.759 kb on + strand at 819.759 kb on + strand at 819.760 kb on - strand at 819.760 kb on - strand at 819.760 kb on - strand at 819.769 kb on + strand at 819.769 kb on + strand at 819.769 kb on + strand at 819.773 kb on + strand at 819.773 kb on + strand at 819.773 kb on + strand at 819.773 kb on + strand at 819.773 kb on + strand at 819.773 kb on + strand at 819.773 kb on + strand at 819.773 kb on + strand at 819.774 kb on - strand at 819.774 kb on - strand at 819.774 kb on - strand at 819.902 kb on + strand, within QEN71_RS33430 at 820.011 kb on + strand at 820.012 kb on - strand at 820.020 kb on + strand at 820.020 kb on + strand at 820.021 kb on - strand at 820.043 kb on + strand at 820.064 kb on + strand at 820.095 kb on + strand at 820.095 kb on + strand at 820.096 kb on - strand at 820.096 kb on - strand at 820.131 kb on - strand at 820.166 kb on + strand at 820.166 kb on + strand at 820.166 kb on + strand at 820.166 kb on + strand at 820.166 kb on + strand at 820.167 kb on - strand at 820.182 kb on + strand at 820.182 kb on + strand at 820.183 kb on - strand at 820.203 kb on - strand at 820.224 kb on + strand at 820.225 kb on - strand at 820.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 818,106 + QEN71_RS33415 0.49 -1.1 818,106 + QEN71_RS33415 0.49 -1.9 818,106 + QEN71_RS33415 0.49 +0.0 818,106 + QEN71_RS33415 0.49 +0.1 818,106 + QEN71_RS33415 0.49 -0.5 818,106 + QEN71_RS33415 0.49 +1.0 818,106 + QEN71_RS33415 0.49 -0.3 818,107 - QEN71_RS33415 0.49 -0.3 818,107 - QEN71_RS33415 0.49 +0.2 818,107 - QEN71_RS33415 0.49 +0.8 818,107 - QEN71_RS33415 0.49 +0.3 818,169 - QEN71_RS33415 0.56 -0.3 818,169 - QEN71_RS33415 0.56 +0.9 818,169 - QEN71_RS33415 0.56 -0.5 818,240 + QEN71_RS33415 0.63 +0.5 818,241 - QEN71_RS33415 0.63 -1.0 818,388 + QEN71_RS33415 0.78 +0.0 818,388 + QEN71_RS33415 0.78 -0.3 818,388 + QEN71_RS33415 0.78 -0.4 818,388 + QEN71_RS33415 0.78 +0.5 818,388 + QEN71_RS33415 0.78 +0.2 818,406 + QEN71_RS33415 0.80 +1.6 818,406 + QEN71_RS33415 0.80 -1.3 818,406 + QEN71_RS33415 0.80 +1.3 818,407 - QEN71_RS33415 0.80 +0.4 818,407 - QEN71_RS33415 0.80 +0.0 818,407 - QEN71_RS33415 0.80 +0.4 818,591 - +0.0 818,591 - -0.2 818,627 + -0.5 818,627 + -1.2 818,627 + -0.6 818,628 - +1.6 818,633 + -0.2 818,633 + +0.1 818,634 - +0.1 818,634 - -1.2 818,634 - -1.0 818,634 - -0.3 818,641 - -0.8 818,641 - -0.0 818,641 - +0.1 818,641 - +0.3 818,706 + -1.0 818,760 + +0.5 818,761 - -0.6 818,761 - +1.5 818,761 - -0.0 818,761 - -0.1 818,857 - QEN71_RS33420 0.19 -1.6 819,021 + QEN71_RS33420 0.40 -0.0 819,022 - QEN71_RS33420 0.40 +0.8 819,120 + QEN71_RS33420 0.53 +0.4 819,120 + QEN71_RS33420 0.53 +0.2 819,120 + QEN71_RS33420 0.53 -0.1 819,120 + QEN71_RS33420 0.53 -0.3 819,121 - QEN71_RS33420 0.53 -0.9 819,121 - QEN71_RS33420 0.53 +1.2 819,121 - QEN71_RS33420 0.53 -0.6 819,121 - QEN71_RS33420 0.53 -1.2 819,135 + QEN71_RS33420 0.55 +0.5 819,135 + QEN71_RS33420 0.55 -0.6 819,135 + QEN71_RS33420 0.55 -0.1 819,135 + QEN71_RS33420 0.55 +0.5 819,135 + QEN71_RS33420 0.55 +0.0 819,135 + QEN71_RS33420 0.55 -0.1 819,135 + QEN71_RS33420 0.55 +0.3 819,135 + QEN71_RS33420 0.55 +0.0 819,135 + QEN71_RS33420 0.55 +0.3 819,136 - QEN71_RS33420 0.55 +0.4 819,136 - QEN71_RS33420 0.55 -0.1 819,136 - QEN71_RS33420 0.55 -0.0 819,136 - QEN71_RS33420 0.55 +1.5 819,136 - QEN71_RS33420 0.55 -1.9 819,136 - QEN71_RS33420 0.55 +1.1 819,136 - QEN71_RS33420 0.55 +0.1 819,136 - QEN71_RS33420 0.55 -1.2 819,208 + QEN71_RS33420 0.64 -0.8 819,208 + QEN71_RS33420 0.64 +0.7 819,208 + QEN71_RS33420 0.64 +0.1 819,209 - QEN71_RS33420 0.64 -0.1 819,470 + -0.1 819,470 + -0.3 819,471 - -0.3 819,471 - +0.5 819,628 + QEN71_RS33425 0.56 -0.0 819,628 + QEN71_RS33425 0.56 +0.7 819,628 + QEN71_RS33425 0.56 +0.2 819,628 + QEN71_RS33425 0.56 -0.4 819,628 + QEN71_RS33425 0.56 +0.6 819,628 + QEN71_RS33425 0.56 +0.1 819,628 + QEN71_RS33425 0.56 -0.1 819,628 + QEN71_RS33425 0.56 -0.0 819,629 - QEN71_RS33425 0.57 +0.3 819,629 - QEN71_RS33425 0.57 -0.9 819,629 - QEN71_RS33425 0.57 -0.3 819,629 - QEN71_RS33425 0.57 -0.0 819,759 + +0.7 819,759 + +0.8 819,759 + -2.0 819,760 - +0.6 819,760 - -0.1 819,760 - +0.2 819,769 + -0.8 819,769 + +0.2 819,769 + -1.5 819,773 + -1.7 819,773 + +0.0 819,773 + +0.0 819,773 + -0.7 819,773 + +1.0 819,773 + -1.8 819,773 + +0.3 819,773 + +0.4 819,774 - -0.1 819,774 - -0.3 819,774 - +0.6 819,902 + QEN71_RS33430 0.46 +0.4 820,011 + -0.5 820,012 - -0.1 820,020 + +0.1 820,020 + -1.1 820,021 - +2.3 820,043 + +0.0 820,064 + -0.0 820,095 + +0.0 820,095 + -0.3 820,096 - +0.2 820,096 - +0.2 820,131 - +1.0 820,166 + +0.0 820,166 + -1.4 820,166 + -0.4 820,166 + +0.2 820,166 + -0.4 820,167 - -1.0 820,182 + +0.6 820,182 + -0.3 820,183 - +0.4 820,203 - +0.0 820,224 + -1.2 820,225 - -0.2 820,313 + -0.4
Or see this region's nucleotide sequence