Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32545 and QEN71_RS32550 overlap by 11 nucleotides QEN71_RS32550 and QEN71_RS32555 overlap by 8 nucleotides QEN71_RS32555 and QEN71_RS32560 are separated by 16 nucleotides
QEN71_RS32545: QEN71_RS32545 - amino acid synthesis family protein, at 639,832 to 640,419
_RS32545
QEN71_RS32550: QEN71_RS32550 - alpha/beta fold hydrolase, at 640,409 to 641,305
_RS32550
QEN71_RS32555: QEN71_RS32555 - flavin reductase family protein, at 641,298 to 642,257
_RS32555
QEN71_RS32560: QEN71_RS32560 - LLM class flavin-dependent oxidoreductase, at 642,274 to 643,317
_RS32560
Position (kb) 641
642
643 Strain fitness (log2 ratio) -1
0
1 at 640.381 kb on + strand at 640.469 kb on + strand at 640.470 kb on - strand at 640.470 kb on - strand at 640.478 kb on + strand at 640.584 kb on - strand, within QEN71_RS32550 at 640.599 kb on - strand, within QEN71_RS32550 at 640.659 kb on - strand, within QEN71_RS32550 at 640.659 kb on - strand, within QEN71_RS32550 at 640.805 kb on + strand, within QEN71_RS32550 at 640.806 kb on - strand, within QEN71_RS32550 at 640.989 kb on - strand, within QEN71_RS32550 at 641.001 kb on - strand, within QEN71_RS32550 at 641.499 kb on + strand, within QEN71_RS32555 at 641.500 kb on - strand, within QEN71_RS32555 at 641.778 kb on + strand, within QEN71_RS32555 at 641.779 kb on - strand, within QEN71_RS32555 at 641.779 kb on - strand, within QEN71_RS32555 at 642.034 kb on + strand, within QEN71_RS32555 at 642.043 kb on - strand, within QEN71_RS32555 at 642.045 kb on + strand, within QEN71_RS32555 at 642.168 kb on + strand at 642.168 kb on + strand at 642.168 kb on + strand at 642.204 kb on + strand at 642.205 kb on - strand at 642.205 kb on - strand at 642.308 kb on - strand at 642.492 kb on + strand, within QEN71_RS32560 at 642.605 kb on - strand, within QEN71_RS32560 at 642.605 kb on - strand, within QEN71_RS32560 at 642.710 kb on - strand, within QEN71_RS32560 at 643.081 kb on - strand, within QEN71_RS32560 at 643.123 kb on + strand, within QEN71_RS32560 at 643.195 kb on + strand, within QEN71_RS32560 at 643.210 kb on + strand, within QEN71_RS32560 at 643.220 kb on - strand at 643.243 kb on - strand at 643.243 kb on - strand at 643.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 640,381 + +0.2 640,469 + +0.7 640,470 - -1.2 640,470 - -0.6 640,478 + -1.6 640,584 - QEN71_RS32550 0.20 +0.1 640,599 - QEN71_RS32550 0.21 -0.3 640,659 - QEN71_RS32550 0.28 +1.0 640,659 - QEN71_RS32550 0.28 -1.6 640,805 + QEN71_RS32550 0.44 -0.7 640,806 - QEN71_RS32550 0.44 +0.4 640,989 - QEN71_RS32550 0.65 -0.6 641,001 - QEN71_RS32550 0.66 +0.1 641,499 + QEN71_RS32555 0.21 -1.3 641,500 - QEN71_RS32555 0.21 -0.3 641,778 + QEN71_RS32555 0.50 -0.2 641,779 - QEN71_RS32555 0.50 +0.4 641,779 - QEN71_RS32555 0.50 -0.6 642,034 + QEN71_RS32555 0.77 -0.0 642,043 - QEN71_RS32555 0.78 -0.3 642,045 + QEN71_RS32555 0.78 +0.7 642,168 + -0.0 642,168 + -0.0 642,168 + +0.1 642,204 + +0.4 642,205 - +0.2 642,205 - -0.0 642,308 - +0.1 642,492 + QEN71_RS32560 0.21 +0.9 642,605 - QEN71_RS32560 0.32 -1.0 642,605 - QEN71_RS32560 0.32 +1.4 642,710 - QEN71_RS32560 0.42 +0.1 643,081 - QEN71_RS32560 0.77 -0.8 643,123 + QEN71_RS32560 0.81 +0.1 643,195 + QEN71_RS32560 0.88 -0.4 643,210 + QEN71_RS32560 0.90 -0.0 643,220 - -0.3 643,243 - +1.1 643,243 - -0.9 643,243 - -0.6
Or see this region's nucleotide sequence