Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32375 and QEN71_RS32380 are separated by 136 nucleotides QEN71_RS32380 and QEN71_RS32385 overlap by 4 nucleotides QEN71_RS32385 and QEN71_RS32390 are separated by 102 nucleotides QEN71_RS32390 and QEN71_RS32395 are separated by 4 nucleotides
QEN71_RS32375: QEN71_RS32375 - carboxypeptidase-like regulatory domain-containing protein, at 604,023 to 604,475
_RS32375
QEN71_RS32380: QEN71_RS32380 - VOC family protein, at 604,612 to 604,992
_RS32380
QEN71_RS32385: QEN71_RS32385 - MFS transporter, at 604,989 to 606,296
_RS32385
QEN71_RS32390: QEN71_RS32390 - LysR family transcriptional regulator, at 606,399 to 607,271
_RS32390
QEN71_RS32395: QEN71_RS32395 - DUF3563 family protein, at 607,276 to 607,413
_RS32395
Position (kb) 604
605
606
607 Strain fitness (log2 ratio) -2
-1
0
1 at 604.120 kb on + strand, within QEN71_RS32375 at 604.120 kb on + strand, within QEN71_RS32375 at 604.243 kb on + strand, within QEN71_RS32375 at 604.244 kb on - strand, within QEN71_RS32375 at 604.351 kb on + strand, within QEN71_RS32375 at 604.351 kb on + strand, within QEN71_RS32375 at 604.351 kb on + strand, within QEN71_RS32375 at 604.352 kb on - strand, within QEN71_RS32375 at 604.352 kb on - strand, within QEN71_RS32375 at 604.352 kb on - strand, within QEN71_RS32375 at 604.352 kb on - strand, within QEN71_RS32375 at 604.499 kb on + strand at 604.499 kb on + strand at 604.499 kb on + strand at 604.500 kb on - strand at 604.500 kb on - strand at 604.630 kb on + strand at 604.664 kb on + strand, within QEN71_RS32380 at 604.664 kb on + strand, within QEN71_RS32380 at 604.664 kb on + strand, within QEN71_RS32380 at 604.664 kb on + strand, within QEN71_RS32380 at 604.665 kb on - strand, within QEN71_RS32380 at 604.665 kb on - strand, within QEN71_RS32380 at 604.665 kb on - strand, within QEN71_RS32380 at 604.840 kb on + strand, within QEN71_RS32380 at 604.929 kb on - strand, within QEN71_RS32380 at 605.053 kb on + strand at 605.053 kb on + strand at 605.170 kb on + strand, within QEN71_RS32385 at 605.170 kb on + strand, within QEN71_RS32385 at 605.173 kb on + strand, within QEN71_RS32385 at 605.173 kb on + strand, within QEN71_RS32385 at 605.174 kb on - strand, within QEN71_RS32385 at 605.174 kb on - strand, within QEN71_RS32385 at 605.174 kb on - strand, within QEN71_RS32385 at 605.174 kb on - strand, within QEN71_RS32385 at 605.185 kb on + strand, within QEN71_RS32385 at 605.302 kb on - strand, within QEN71_RS32385 at 605.431 kb on + strand, within QEN71_RS32385 at 605.431 kb on + strand, within QEN71_RS32385 at 605.431 kb on + strand, within QEN71_RS32385 at 605.432 kb on - strand, within QEN71_RS32385 at 605.432 kb on - strand, within QEN71_RS32385 at 605.432 kb on - strand, within QEN71_RS32385 at 605.503 kb on + strand, within QEN71_RS32385 at 605.504 kb on - strand, within QEN71_RS32385 at 605.509 kb on + strand, within QEN71_RS32385 at 605.509 kb on + strand, within QEN71_RS32385 at 605.510 kb on - strand, within QEN71_RS32385 at 605.738 kb on + strand, within QEN71_RS32385 at 605.738 kb on + strand, within QEN71_RS32385 at 605.738 kb on + strand, within QEN71_RS32385 at 605.739 kb on - strand, within QEN71_RS32385 at 605.740 kb on + strand, within QEN71_RS32385 at 605.740 kb on + strand, within QEN71_RS32385 at 605.740 kb on + strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.791 kb on + strand, within QEN71_RS32385 at 605.792 kb on - strand, within QEN71_RS32385 at 605.792 kb on - strand, within QEN71_RS32385 at 605.842 kb on + strand, within QEN71_RS32385 at 605.843 kb on - strand, within QEN71_RS32385 at 606.127 kb on + strand, within QEN71_RS32385 at 606.128 kb on - strand, within QEN71_RS32385 at 606.327 kb on + strand at 606.328 kb on - strand at 606.328 kb on - strand at 606.329 kb on + strand at 606.330 kb on - strand at 606.362 kb on + strand at 606.374 kb on + strand at 606.407 kb on - strand at 606.526 kb on + strand, within QEN71_RS32390 at 606.527 kb on - strand, within QEN71_RS32390 at 607.166 kb on - strand, within QEN71_RS32390 at 607.166 kb on - strand, within QEN71_RS32390 at 607.166 kb on - strand, within QEN71_RS32390 at 607.170 kb on + strand, within QEN71_RS32390 at 607.171 kb on - strand, within QEN71_RS32390
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 604,120 + QEN71_RS32375 0.21 +0.2 604,120 + QEN71_RS32375 0.21 -1.1 604,243 + QEN71_RS32375 0.49 +0.7 604,244 - QEN71_RS32375 0.49 -0.2 604,351 + QEN71_RS32375 0.72 -0.4 604,351 + QEN71_RS32375 0.72 +0.1 604,351 + QEN71_RS32375 0.72 -0.4 604,352 - QEN71_RS32375 0.73 -0.0 604,352 - QEN71_RS32375 0.73 -0.0 604,352 - QEN71_RS32375 0.73 -0.5 604,352 - QEN71_RS32375 0.73 -0.0 604,499 + -0.3 604,499 + -0.4 604,499 + -1.2 604,500 - -0.5 604,500 - -0.8 604,630 + +1.4 604,664 + QEN71_RS32380 0.14 +0.3 604,664 + QEN71_RS32380 0.14 -0.7 604,664 + QEN71_RS32380 0.14 -0.5 604,664 + QEN71_RS32380 0.14 +0.9 604,665 - QEN71_RS32380 0.14 +0.7 604,665 - QEN71_RS32380 0.14 +0.1 604,665 - QEN71_RS32380 0.14 -0.5 604,840 + QEN71_RS32380 0.60 -0.9 604,929 - QEN71_RS32380 0.83 -1.1 605,053 + -0.4 605,053 + -1.4 605,170 + QEN71_RS32385 0.14 +0.6 605,170 + QEN71_RS32385 0.14 +0.1 605,173 + QEN71_RS32385 0.14 -1.1 605,173 + QEN71_RS32385 0.14 +0.4 605,174 - QEN71_RS32385 0.14 +0.5 605,174 - QEN71_RS32385 0.14 -0.1 605,174 - QEN71_RS32385 0.14 -0.4 605,174 - QEN71_RS32385 0.14 -1.2 605,185 + QEN71_RS32385 0.15 -0.8 605,302 - QEN71_RS32385 0.24 -0.4 605,431 + QEN71_RS32385 0.34 +0.5 605,431 + QEN71_RS32385 0.34 -1.1 605,431 + QEN71_RS32385 0.34 +0.0 605,432 - QEN71_RS32385 0.34 -0.9 605,432 - QEN71_RS32385 0.34 -1.6 605,432 - QEN71_RS32385 0.34 -0.7 605,503 + QEN71_RS32385 0.39 +0.1 605,504 - QEN71_RS32385 0.39 -0.0 605,509 + QEN71_RS32385 0.40 +0.1 605,509 + QEN71_RS32385 0.40 -0.2 605,510 - QEN71_RS32385 0.40 +0.8 605,738 + QEN71_RS32385 0.57 +1.0 605,738 + QEN71_RS32385 0.57 -0.1 605,738 + QEN71_RS32385 0.57 +0.6 605,739 - QEN71_RS32385 0.57 +0.3 605,740 + QEN71_RS32385 0.57 +0.2 605,740 + QEN71_RS32385 0.57 -0.4 605,740 + QEN71_RS32385 0.57 -0.8 605,741 - QEN71_RS32385 0.57 +0.8 605,741 - QEN71_RS32385 0.57 +0.0 605,741 - QEN71_RS32385 0.57 +0.5 605,741 - QEN71_RS32385 0.57 +0.8 605,741 - QEN71_RS32385 0.57 -0.2 605,791 + QEN71_RS32385 0.61 +0.1 605,792 - QEN71_RS32385 0.61 +1.2 605,792 - QEN71_RS32385 0.61 -0.5 605,842 + QEN71_RS32385 0.65 -1.2 605,843 - QEN71_RS32385 0.65 +0.0 606,127 + QEN71_RS32385 0.87 +0.6 606,128 - QEN71_RS32385 0.87 +0.1 606,327 + -0.1 606,328 - +1.0 606,328 - -0.3 606,329 + -1.2 606,330 - +1.0 606,362 + -0.1 606,374 + -0.3 606,407 - +1.2 606,526 + QEN71_RS32390 0.15 -1.9 606,527 - QEN71_RS32390 0.15 -0.2 607,166 - QEN71_RS32390 0.88 -0.7 607,166 - QEN71_RS32390 0.88 -0.7 607,166 - QEN71_RS32390 0.88 -0.8 607,170 + QEN71_RS32390 0.88 -0.0 607,171 - QEN71_RS32390 0.88 -1.3
Or see this region's nucleotide sequence