Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31895 and QEN71_RS31900 are separated by 67 nucleotides QEN71_RS31900 and QEN71_RS31905 overlap by 4 nucleotides QEN71_RS31905 and QEN71_RS31910 overlap by 4 nucleotides
QEN71_RS31895: QEN71_RS31895 - ABC transporter substrate-binding protein, at 507,901 to 509,523
_RS31895
QEN71_RS31900: QEN71_RS31900 - ABC transporter permease, at 509,591 to 510,547
_RS31900
QEN71_RS31905: QEN71_RS31905 - ABC transporter permease, at 510,544 to 511,503
_RS31905
QEN71_RS31910: QEN71_RS31910 - ABC transporter ATP-binding protein, at 511,500 to 513,329
_RS31910
Position (kb) 509
510
511 Strain fitness (log2 ratio) -2
-1
0
1
2 at 508.801 kb on + strand, within QEN71_RS31895 at 508.802 kb on - strand, within QEN71_RS31895 at 508.960 kb on + strand, within QEN71_RS31895 at 508.961 kb on - strand, within QEN71_RS31895 at 508.961 kb on - strand, within QEN71_RS31895 at 508.961 kb on - strand, within QEN71_RS31895 at 509.057 kb on - strand, within QEN71_RS31895 at 509.057 kb on - strand, within QEN71_RS31895 at 509.057 kb on - strand, within QEN71_RS31895 at 509.359 kb on + strand, within QEN71_RS31895 at 509.688 kb on + strand, within QEN71_RS31900 at 509.689 kb on - strand, within QEN71_RS31900 at 509.795 kb on + strand, within QEN71_RS31900 at 509.796 kb on - strand, within QEN71_RS31900 at 510.143 kb on + strand, within QEN71_RS31900 at 510.144 kb on - strand, within QEN71_RS31900 at 510.144 kb on - strand, within QEN71_RS31900 at 510.236 kb on + strand, within QEN71_RS31900 at 510.236 kb on + strand, within QEN71_RS31900 at 510.236 kb on + strand, within QEN71_RS31900 at 510.237 kb on - strand, within QEN71_RS31900 at 510.237 kb on - strand, within QEN71_RS31900 at 510.305 kb on - strand, within QEN71_RS31900 at 510.347 kb on + strand, within QEN71_RS31900 at 510.348 kb on - strand, within QEN71_RS31900 at 510.390 kb on - strand, within QEN71_RS31900 at 510.480 kb on - strand at 510.480 kb on - strand at 510.775 kb on + strand, within QEN71_RS31905 at 510.775 kb on + strand, within QEN71_RS31905 at 510.776 kb on - strand, within QEN71_RS31905 at 510.776 kb on - strand, within QEN71_RS31905 at 510.817 kb on + strand, within QEN71_RS31905 at 510.818 kb on - strand, within QEN71_RS31905 at 510.818 kb on - strand, within QEN71_RS31905 at 510.892 kb on + strand, within QEN71_RS31905 at 511.089 kb on + strand, within QEN71_RS31905 at 511.168 kb on + strand, within QEN71_RS31905 at 511.207 kb on + strand, within QEN71_RS31905 at 511.209 kb on + strand, within QEN71_RS31905
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 508,801 + QEN71_RS31895 0.55 +0.1 508,802 - QEN71_RS31895 0.56 -0.8 508,960 + QEN71_RS31895 0.65 +0.5 508,961 - QEN71_RS31895 0.65 +1.0 508,961 - QEN71_RS31895 0.65 -0.4 508,961 - QEN71_RS31895 0.65 +1.8 509,057 - QEN71_RS31895 0.71 +0.5 509,057 - QEN71_RS31895 0.71 -1.2 509,057 - QEN71_RS31895 0.71 -0.8 509,359 + QEN71_RS31895 0.90 +0.4 509,688 + QEN71_RS31900 0.10 -0.6 509,689 - QEN71_RS31900 0.10 +0.4 509,795 + QEN71_RS31900 0.21 +1.3 509,796 - QEN71_RS31900 0.21 -0.0 510,143 + QEN71_RS31900 0.58 -0.6 510,144 - QEN71_RS31900 0.58 -0.2 510,144 - QEN71_RS31900 0.58 -0.6 510,236 + QEN71_RS31900 0.67 -0.1 510,236 + QEN71_RS31900 0.67 +0.6 510,236 + QEN71_RS31900 0.67 -0.6 510,237 - QEN71_RS31900 0.68 -0.9 510,237 - QEN71_RS31900 0.68 +1.0 510,305 - QEN71_RS31900 0.75 +1.7 510,347 + QEN71_RS31900 0.79 +0.6 510,348 - QEN71_RS31900 0.79 +0.3 510,390 - QEN71_RS31900 0.83 -0.7 510,480 - -0.5 510,480 - -0.0 510,775 + QEN71_RS31905 0.24 +0.1 510,775 + QEN71_RS31905 0.24 -1.1 510,776 - QEN71_RS31905 0.24 -0.0 510,776 - QEN71_RS31905 0.24 +0.1 510,817 + QEN71_RS31905 0.28 -0.1 510,818 - QEN71_RS31905 0.29 -0.0 510,818 - QEN71_RS31905 0.29 -0.5 510,892 + QEN71_RS31905 0.36 -0.3 511,089 + QEN71_RS31905 0.57 +0.8 511,168 + QEN71_RS31905 0.65 -1.0 511,207 + QEN71_RS31905 0.69 -1.8 511,209 + QEN71_RS31905 0.69 +0.2
Or see this region's nucleotide sequence