Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS24010 and QEN71_RS24015 are separated by 106 nucleotides QEN71_RS24015 and QEN71_RS24020 are separated by 126 nucleotides QEN71_RS24020 and QEN71_RS24025 overlap by 1 nucleotides QEN71_RS24025 and QEN71_RS24030 overlap by 4 nucleotides
QEN71_RS24010: QEN71_RS24010 - pyridoxal phosphate-dependent aminotransferase, at 5,345,297 to 5,346,487
_RS24010
QEN71_RS24015: QEN71_RS24015 - glutathione S-transferase, at 5,346,594 to 5,347,241
_RS24015
QEN71_RS24020: QEN71_RS24020 - 3-hydroxyacyl-CoA dehydrogenase, at 5,347,368 to 5,348,942
_RS24020
QEN71_RS24025: QEN71_RS24025 - enoyl-CoA hydratase, at 5,348,942 to 5,349,730
_RS24025
QEN71_RS24030: QEN71_RS24030 - histidine phosphatase family protein, at 5,349,727 to 5,350,449
_RS24030
Position (kb) 5347
5348
5349 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5346.392 kb on + strand at 5346.392 kb on + strand at 5346.393 kb on - strand at 5346.393 kb on - strand at 5346.393 kb on - strand at 5346.617 kb on + strand at 5346.617 kb on + strand at 5346.617 kb on + strand at 5346.617 kb on + strand at 5346.617 kb on + strand at 5346.618 kb on - strand at 5346.618 kb on - strand at 5346.618 kb on - strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.619 kb on + strand at 5346.620 kb on - strand at 5346.620 kb on - strand at 5346.620 kb on - strand at 5346.620 kb on - strand at 5346.620 kb on - strand at 5346.620 kb on - strand at 5346.620 kb on - strand at 5346.679 kb on + strand, within QEN71_RS24015 at 5346.679 kb on + strand, within QEN71_RS24015 at 5346.679 kb on + strand, within QEN71_RS24015 at 5346.679 kb on + strand, within QEN71_RS24015 at 5346.680 kb on - strand, within QEN71_RS24015 at 5346.680 kb on - strand, within QEN71_RS24015 at 5346.680 kb on - strand, within QEN71_RS24015 at 5346.724 kb on + strand, within QEN71_RS24015 at 5346.725 kb on - strand, within QEN71_RS24015 at 5346.725 kb on - strand, within QEN71_RS24015 at 5346.808 kb on + strand, within QEN71_RS24015 at 5346.919 kb on + strand, within QEN71_RS24015 at 5346.919 kb on + strand, within QEN71_RS24015 at 5346.919 kb on + strand, within QEN71_RS24015 at 5346.920 kb on - strand, within QEN71_RS24015 at 5347.204 kb on + strand at 5347.205 kb on - strand at 5347.205 kb on - strand at 5347.205 kb on - strand at 5347.205 kb on - strand at 5347.207 kb on + strand at 5347.207 kb on + strand at 5347.207 kb on + strand at 5347.208 kb on - strand at 5347.301 kb on + strand at 5347.333 kb on + strand at 5347.334 kb on - strand at 5347.336 kb on + strand at 5347.337 kb on - strand at 5347.337 kb on - strand at 5347.337 kb on - strand at 5347.337 kb on - strand at 5347.341 kb on + strand at 5347.341 kb on + strand at 5347.346 kb on + strand at 5347.346 kb on + strand at 5347.346 kb on + strand at 5347.346 kb on + strand at 5347.347 kb on - strand at 5347.392 kb on + strand at 5347.392 kb on + strand at 5347.393 kb on - strand at 5347.393 kb on - strand at 5347.393 kb on - strand at 5347.485 kb on + strand at 5347.485 kb on + strand at 5347.485 kb on + strand at 5347.486 kb on - strand at 5347.524 kb on + strand at 5347.525 kb on - strand at 5347.525 kb on - strand at 5347.525 kb on - strand at 5348.133 kb on + strand, within QEN71_RS24020 at 5348.133 kb on + strand, within QEN71_RS24020 at 5348.133 kb on + strand, within QEN71_RS24020 at 5348.134 kb on - strand, within QEN71_RS24020 at 5348.134 kb on - strand, within QEN71_RS24020 at 5348.134 kb on - strand, within QEN71_RS24020 at 5348.134 kb on - strand, within QEN71_RS24020 at 5348.134 kb on - strand, within QEN71_RS24020 at 5348.145 kb on + strand, within QEN71_RS24020 at 5348.145 kb on + strand, within QEN71_RS24020 at 5348.145 kb on + strand, within QEN71_RS24020 at 5348.145 kb on + strand, within QEN71_RS24020 at 5348.146 kb on - strand, within QEN71_RS24020 at 5348.232 kb on + strand, within QEN71_RS24020 at 5348.232 kb on + strand, within QEN71_RS24020 at 5348.232 kb on + strand, within QEN71_RS24020 at 5348.232 kb on + strand, within QEN71_RS24020 at 5348.232 kb on + strand, within QEN71_RS24020 at 5348.233 kb on - strand, within QEN71_RS24020 at 5348.233 kb on - strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.238 kb on + strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.239 kb on - strand, within QEN71_RS24020 at 5348.647 kb on + strand, within QEN71_RS24020 at 5348.648 kb on - strand, within QEN71_RS24020 at 5348.648 kb on - strand, within QEN71_RS24020 at 5348.711 kb on + strand, within QEN71_RS24020 at 5348.711 kb on + strand, within QEN71_RS24020 at 5348.711 kb on + strand, within QEN71_RS24020 at 5348.712 kb on - strand, within QEN71_RS24020 at 5348.712 kb on - strand, within QEN71_RS24020 at 5348.919 kb on + strand at 5348.919 kb on + strand at 5348.919 kb on + strand at 5348.919 kb on + strand at 5348.919 kb on + strand at 5348.919 kb on + strand at 5348.919 kb on + strand at 5348.920 kb on - strand at 5348.920 kb on - strand at 5348.920 kb on - strand at 5348.940 kb on + strand at 5348.941 kb on - strand at 5348.941 kb on - strand at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.044 kb on + strand, within QEN71_RS24025 at 5349.045 kb on - strand, within QEN71_RS24025 at 5349.045 kb on - strand, within QEN71_RS24025 at 5349.045 kb on - strand, within QEN71_RS24025 at 5349.045 kb on - strand, within QEN71_RS24025 at 5349.045 kb on - strand, within QEN71_RS24025 at 5349.353 kb on + strand, within QEN71_RS24025 at 5349.353 kb on + strand, within QEN71_RS24025 at 5349.354 kb on - strand, within QEN71_RS24025 at 5349.354 kb on - strand, within QEN71_RS24025 at 5349.354 kb on - strand, within QEN71_RS24025 at 5349.354 kb on - strand, within QEN71_RS24025 at 5349.369 kb on + strand, within QEN71_RS24025 at 5349.409 kb on - strand, within QEN71_RS24025 at 5349.409 kb on - strand, within QEN71_RS24025 at 5349.409 kb on - strand, within QEN71_RS24025 at 5349.722 kb on + strand at 5349.722 kb on + strand at 5349.722 kb on + strand at 5349.722 kb on + strand at 5349.723 kb on - strand at 5349.723 kb on - strand at 5349.723 kb on - strand at 5349.723 kb on - strand at 5349.723 kb on - strand at 5349.723 kb on - strand at 5349.742 kb on + strand at 5349.769 kb on + strand at 5349.769 kb on + strand at 5349.769 kb on + strand at 5349.769 kb on + strand at 5349.769 kb on + strand at 5349.770 kb on - strand at 5349.770 kb on - strand at 5349.770 kb on - strand at 5349.770 kb on - strand at 5349.770 kb on - strand at 5349.770 kb on - strand at 5349.770 kb on - strand at 5349.796 kb on + strand at 5349.796 kb on + strand at 5349.796 kb on + strand at 5349.796 kb on + strand at 5349.796 kb on + strand at 5349.796 kb on + strand at 5349.796 kb on + strand at 5349.797 kb on - strand at 5349.804 kb on + strand, within QEN71_RS24030 at 5349.804 kb on + strand, within QEN71_RS24030 at 5349.804 kb on + strand, within QEN71_RS24030 at 5349.804 kb on + strand, within QEN71_RS24030 at 5349.804 kb on + strand, within QEN71_RS24030
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 5,346,392 + -0.0 5,346,392 + -1.5 5,346,393 - +0.5 5,346,393 - -0.9 5,346,393 - -0.9 5,346,617 + +0.9 5,346,617 + -0.1 5,346,617 + -0.3 5,346,617 + -0.3 5,346,617 + -0.2 5,346,618 - -2.0 5,346,618 - -1.3 5,346,618 - -0.3 5,346,619 + +0.2 5,346,619 + +1.3 5,346,619 + +0.9 5,346,619 + +0.3 5,346,619 + -0.3 5,346,619 + +2.8 5,346,619 + -0.0 5,346,619 + +0.1 5,346,619 + -0.0 5,346,619 + -2.3 5,346,619 + -1.5 5,346,619 + +1.3 5,346,619 + -0.2 5,346,619 + -0.0 5,346,620 - +0.1 5,346,620 - +0.7 5,346,620 - +0.4 5,346,620 - +0.7 5,346,620 - -0.4 5,346,620 - +0.6 5,346,620 - -1.5 5,346,679 + QEN71_RS24015 0.13 +1.1 5,346,679 + QEN71_RS24015 0.13 +0.0 5,346,679 + QEN71_RS24015 0.13 +0.2 5,346,679 + QEN71_RS24015 0.13 +0.5 5,346,680 - QEN71_RS24015 0.13 -0.7 5,346,680 - QEN71_RS24015 0.13 -0.2 5,346,680 - QEN71_RS24015 0.13 +0.6 5,346,724 + QEN71_RS24015 0.20 -1.0 5,346,725 - QEN71_RS24015 0.20 +0.3 5,346,725 - QEN71_RS24015 0.20 +0.0 5,346,808 + QEN71_RS24015 0.33 +0.5 5,346,919 + QEN71_RS24015 0.50 -0.4 5,346,919 + QEN71_RS24015 0.50 -0.8 5,346,919 + QEN71_RS24015 0.50 +0.8 5,346,920 - QEN71_RS24015 0.50 -0.2 5,347,204 + +0.3 5,347,205 - -0.1 5,347,205 - +0.2 5,347,205 - +0.5 5,347,205 - -0.7 5,347,207 + +0.8 5,347,207 + -1.4 5,347,207 + -0.3 5,347,208 - -0.8 5,347,301 + -0.2 5,347,333 + +0.2 5,347,334 - +0.5 5,347,336 + -0.4 5,347,337 - +2.0 5,347,337 - -1.5 5,347,337 - -0.5 5,347,337 - -0.4 5,347,341 + +1.0 5,347,341 + -0.2 5,347,346 + +0.1 5,347,346 + +0.9 5,347,346 + +0.3 5,347,346 + -0.4 5,347,347 - -0.4 5,347,392 + +0.7 5,347,392 + -0.8 5,347,393 - -1.0 5,347,393 - +0.2 5,347,393 - +0.7 5,347,485 + -0.8 5,347,485 + -1.2 5,347,485 + +0.3 5,347,486 - -0.8 5,347,524 + +0.8 5,347,525 - -0.4 5,347,525 - +0.4 5,347,525 - +2.0 5,348,133 + QEN71_RS24020 0.49 -0.5 5,348,133 + QEN71_RS24020 0.49 -1.3 5,348,133 + QEN71_RS24020 0.49 +0.8 5,348,134 - QEN71_RS24020 0.49 +0.1 5,348,134 - QEN71_RS24020 0.49 +2.0 5,348,134 - QEN71_RS24020 0.49 +1.2 5,348,134 - QEN71_RS24020 0.49 +0.2 5,348,134 - QEN71_RS24020 0.49 -2.7 5,348,145 + QEN71_RS24020 0.49 -0.6 5,348,145 + QEN71_RS24020 0.49 +1.7 5,348,145 + QEN71_RS24020 0.49 +0.1 5,348,145 + QEN71_RS24020 0.49 +1.2 5,348,146 - QEN71_RS24020 0.49 +0.5 5,348,232 + QEN71_RS24020 0.55 -0.0 5,348,232 + QEN71_RS24020 0.55 +1.5 5,348,232 + QEN71_RS24020 0.55 -0.0 5,348,232 + QEN71_RS24020 0.55 -0.7 5,348,232 + QEN71_RS24020 0.55 -0.6 5,348,233 - QEN71_RS24020 0.55 +2.0 5,348,233 - QEN71_RS24020 0.55 -1.0 5,348,238 + QEN71_RS24020 0.55 -2.3 5,348,238 + QEN71_RS24020 0.55 -1.2 5,348,238 + QEN71_RS24020 0.55 -0.6 5,348,238 + QEN71_RS24020 0.55 -1.5 5,348,238 + QEN71_RS24020 0.55 -0.1 5,348,238 + QEN71_RS24020 0.55 +0.7 5,348,238 + QEN71_RS24020 0.55 -2.1 5,348,238 + QEN71_RS24020 0.55 +0.8 5,348,238 + QEN71_RS24020 0.55 +0.5 5,348,238 + QEN71_RS24020 0.55 +0.7 5,348,238 + QEN71_RS24020 0.55 +0.0 5,348,238 + QEN71_RS24020 0.55 -0.1 5,348,238 + QEN71_RS24020 0.55 +0.3 5,348,238 + QEN71_RS24020 0.55 +0.1 5,348,238 + QEN71_RS24020 0.55 -0.4 5,348,239 - QEN71_RS24020 0.55 +0.2 5,348,239 - QEN71_RS24020 0.55 -0.6 5,348,239 - QEN71_RS24020 0.55 +0.2 5,348,239 - QEN71_RS24020 0.55 -0.7 5,348,239 - QEN71_RS24020 0.55 -1.0 5,348,239 - QEN71_RS24020 0.55 -0.8 5,348,239 - QEN71_RS24020 0.55 +0.2 5,348,239 - QEN71_RS24020 0.55 -1.4 5,348,239 - QEN71_RS24020 0.55 -0.4 5,348,239 - QEN71_RS24020 0.55 +0.4 5,348,239 - QEN71_RS24020 0.55 -0.4 5,348,239 - QEN71_RS24020 0.55 -0.3 5,348,239 - QEN71_RS24020 0.55 +0.4 5,348,239 - QEN71_RS24020 0.55 -0.8 5,348,647 + QEN71_RS24020 0.81 -0.1 5,348,648 - QEN71_RS24020 0.81 +0.5 5,348,648 - QEN71_RS24020 0.81 -1.1 5,348,711 + QEN71_RS24020 0.85 -0.0 5,348,711 + QEN71_RS24020 0.85 +0.5 5,348,711 + QEN71_RS24020 0.85 +0.9 5,348,712 - QEN71_RS24020 0.85 -0.3 5,348,712 - QEN71_RS24020 0.85 -1.6 5,348,919 + -0.4 5,348,919 + -0.3 5,348,919 + +0.4 5,348,919 + -0.4 5,348,919 + +0.3 5,348,919 + +0.5 5,348,919 + +1.3 5,348,920 - -0.2 5,348,920 - +0.1 5,348,920 - -0.0 5,348,940 + +0.2 5,348,941 - -0.5 5,348,941 - -0.6 5,349,044 + QEN71_RS24025 0.13 -0.3 5,349,044 + QEN71_RS24025 0.13 -1.4 5,349,044 + QEN71_RS24025 0.13 -0.4 5,349,044 + QEN71_RS24025 0.13 -1.0 5,349,044 + QEN71_RS24025 0.13 -0.4 5,349,044 + QEN71_RS24025 0.13 -1.8 5,349,044 + QEN71_RS24025 0.13 +0.7 5,349,044 + QEN71_RS24025 0.13 -1.1 5,349,044 + QEN71_RS24025 0.13 -0.6 5,349,044 + QEN71_RS24025 0.13 +0.2 5,349,044 + QEN71_RS24025 0.13 -0.6 5,349,045 - QEN71_RS24025 0.13 -0.6 5,349,045 - QEN71_RS24025 0.13 -1.5 5,349,045 - QEN71_RS24025 0.13 +0.4 5,349,045 - QEN71_RS24025 0.13 -0.4 5,349,045 - QEN71_RS24025 0.13 -1.0 5,349,353 + QEN71_RS24025 0.52 -0.0 5,349,353 + QEN71_RS24025 0.52 +1.0 5,349,354 - QEN71_RS24025 0.52 +1.0 5,349,354 - QEN71_RS24025 0.52 +1.4 5,349,354 - QEN71_RS24025 0.52 -0.6 5,349,354 - QEN71_RS24025 0.52 +0.3 5,349,369 + QEN71_RS24025 0.54 +0.8 5,349,409 - QEN71_RS24025 0.59 +0.3 5,349,409 - QEN71_RS24025 0.59 -0.2 5,349,409 - QEN71_RS24025 0.59 -1.3 5,349,722 + -0.4 5,349,722 + -0.4 5,349,722 + -0.5 5,349,722 + +0.1 5,349,723 - -0.2 5,349,723 - -1.2 5,349,723 - -0.3 5,349,723 - -0.8 5,349,723 - +0.1 5,349,723 - +0.6 5,349,742 + -0.0 5,349,769 + +1.6 5,349,769 + -0.7 5,349,769 + -0.1 5,349,769 + +0.2 5,349,769 + -0.3 5,349,770 - +0.0 5,349,770 - -0.2 5,349,770 - -0.0 5,349,770 - -0.8 5,349,770 - -0.2 5,349,770 - -0.4 5,349,770 - +0.7 5,349,796 + -0.3 5,349,796 + +0.9 5,349,796 + -0.1 5,349,796 + -0.7 5,349,796 + +0.5 5,349,796 + -0.5 5,349,796 + -0.4 5,349,797 - +0.5 5,349,804 + QEN71_RS24030 0.11 -1.4 5,349,804 + QEN71_RS24030 0.11 -1.2 5,349,804 + QEN71_RS24030 0.11 -1.8 5,349,804 + QEN71_RS24030 0.11 +1.7 5,349,804 + QEN71_RS24030 0.11 -0.9
Or see this region's nucleotide sequence