Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS22420 and QEN71_RS22425 are separated by 28 nucleotides QEN71_RS22425 and QEN71_RS22430 are separated by 259 nucleotides
QEN71_RS22420: QEN71_RS22420 - glycosyltransferase family 39 protein, at 4,982,282 to 4,984,087
_RS22420
QEN71_RS22425: QEN71_RS22425 - SMR family transporter, at 4,984,116 to 4,984,487
_RS22425
QEN71_RS22430: QEN71_RS22430 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 4,984,747 to 4,985,898
_RS22430
Position (kb)
4984
4985 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4984.293 kb on + strand, within QEN71_RS22425 at 4984.294 kb on - strand, within QEN71_RS22425 at 4984.294 kb on - strand, within QEN71_RS22425 at 4984.294 kb on - strand, within QEN71_RS22425 at 4984.294 kb on - strand, within QEN71_RS22425 at 4984.294 kb on - strand, within QEN71_RS22425 at 4984.294 kb on - strand, within QEN71_RS22425 at 4984.294 kb on - strand, within QEN71_RS22425 at 4984.294 kb on - strand, within QEN71_RS22425 at 4984.294 kb on - strand, within QEN71_RS22425 at 4984.402 kb on - strand, within QEN71_RS22425 at 4984.402 kb on - strand, within QEN71_RS22425 at 4984.402 kb on - strand, within QEN71_RS22425 at 4984.402 kb on - strand, within QEN71_RS22425 at 4984.402 kb on - strand, within QEN71_RS22425 at 4984.402 kb on - strand, within QEN71_RS22425 at 4984.402 kb on - strand, within QEN71_RS22425 at 4984.518 kb on + strand at 4984.518 kb on + strand at 4984.518 kb on + strand at 4984.519 kb on - strand at 4984.524 kb on + strand at 4984.524 kb on + strand at 4984.524 kb on + strand at 4984.524 kb on + strand at 4984.525 kb on - strand at 4984.525 kb on - strand at 4984.525 kb on - strand at 4984.525 kb on - strand at 4984.554 kb on + strand at 4984.554 kb on + strand at 4984.554 kb on + strand at 4984.554 kb on + strand at 4984.555 kb on - strand at 4984.588 kb on + strand at 4984.588 kb on + strand at 4984.588 kb on + strand at 4984.588 kb on + strand at 4984.588 kb on + strand at 4984.588 kb on + strand at 4984.588 kb on + strand at 4984.588 kb on + strand at 4984.588 kb on + strand at 4984.588 kb on + strand at 4984.648 kb on + strand at 4984.676 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 4,984,293 + QEN71_RS22425 0.48 -1.8 4,984,294 - QEN71_RS22425 0.48 -2.2 4,984,294 - QEN71_RS22425 0.48 -0.2 4,984,294 - QEN71_RS22425 0.48 -0.4 4,984,294 - QEN71_RS22425 0.48 -0.9 4,984,294 - QEN71_RS22425 0.48 -1.2 4,984,294 - QEN71_RS22425 0.48 -0.1 4,984,294 - QEN71_RS22425 0.48 -0.0 4,984,294 - QEN71_RS22425 0.48 -0.0 4,984,294 - QEN71_RS22425 0.48 -1.3 4,984,402 - QEN71_RS22425 0.77 -1.2 4,984,402 - QEN71_RS22425 0.77 -0.7 4,984,402 - QEN71_RS22425 0.77 -0.1 4,984,402 - QEN71_RS22425 0.77 -0.2 4,984,402 - QEN71_RS22425 0.77 -0.1 4,984,402 - QEN71_RS22425 0.77 -0.5 4,984,402 - QEN71_RS22425 0.77 +0.1 4,984,518 + +0.1 4,984,518 + -3.5 4,984,518 + +0.1 4,984,519 - -1.1 4,984,524 + -0.1 4,984,524 + -2.2 4,984,524 + +1.2 4,984,524 + +0.2 4,984,525 - -0.6 4,984,525 - -1.8 4,984,525 - -0.1 4,984,525 - -0.2 4,984,554 + +0.2 4,984,554 + -0.6 4,984,554 + +0.7 4,984,554 + +0.1 4,984,555 - +0.9 4,984,588 + +0.1 4,984,588 + -0.5 4,984,588 + -0.4 4,984,588 + +0.6 4,984,588 + -1.3 4,984,588 + -0.3 4,984,588 + -0.9 4,984,588 + -0.6 4,984,588 + -2.3 4,984,588 + -0.4 4,984,648 + -0.9 4,984,676 + -2.3
Or see this region's nucleotide sequence