Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22425

Experiment: Psabiae_ML3b with MT81

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS22420 and QEN71_RS22425 are separated by 28 nucleotidesQEN71_RS22425 and QEN71_RS22430 are separated by 259 nucleotides QEN71_RS22420: QEN71_RS22420 - glycosyltransferase family 39 protein, at 4,982,282 to 4,984,087 _RS22420 QEN71_RS22425: QEN71_RS22425 - SMR family transporter, at 4,984,116 to 4,984,487 _RS22425 QEN71_RS22430: QEN71_RS22430 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 4,984,747 to 4,985,898 _RS22430 Position (kb) 4984 4985Strain fitness (log2 ratio) -3 -2 -1 0 1at 4984.293 kb on + strand, within QEN71_RS22425at 4984.294 kb on - strand, within QEN71_RS22425at 4984.294 kb on - strand, within QEN71_RS22425at 4984.294 kb on - strand, within QEN71_RS22425at 4984.294 kb on - strand, within QEN71_RS22425at 4984.294 kb on - strand, within QEN71_RS22425at 4984.294 kb on - strand, within QEN71_RS22425at 4984.294 kb on - strand, within QEN71_RS22425at 4984.294 kb on - strand, within QEN71_RS22425at 4984.294 kb on - strand, within QEN71_RS22425at 4984.402 kb on - strand, within QEN71_RS22425at 4984.402 kb on - strand, within QEN71_RS22425at 4984.402 kb on - strand, within QEN71_RS22425at 4984.402 kb on - strand, within QEN71_RS22425at 4984.402 kb on - strand, within QEN71_RS22425at 4984.402 kb on - strand, within QEN71_RS22425at 4984.402 kb on - strand, within QEN71_RS22425at 4984.518 kb on + strandat 4984.518 kb on + strandat 4984.518 kb on + strandat 4984.519 kb on - strandat 4984.524 kb on + strandat 4984.524 kb on + strandat 4984.524 kb on + strandat 4984.524 kb on + strandat 4984.525 kb on - strandat 4984.525 kb on - strandat 4984.525 kb on - strandat 4984.525 kb on - strandat 4984.554 kb on + strandat 4984.554 kb on + strandat 4984.554 kb on + strandat 4984.554 kb on + strandat 4984.555 kb on - strandat 4984.588 kb on + strandat 4984.588 kb on + strandat 4984.588 kb on + strandat 4984.588 kb on + strandat 4984.588 kb on + strandat 4984.588 kb on + strandat 4984.588 kb on + strandat 4984.588 kb on + strandat 4984.588 kb on + strandat 4984.588 kb on + strandat 4984.648 kb on + strandat 4984.676 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81
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4,984,293 + QEN71_RS22425 0.48 -1.8
4,984,294 - QEN71_RS22425 0.48 -2.2
4,984,294 - QEN71_RS22425 0.48 -0.2
4,984,294 - QEN71_RS22425 0.48 -0.4
4,984,294 - QEN71_RS22425 0.48 -0.9
4,984,294 - QEN71_RS22425 0.48 -1.2
4,984,294 - QEN71_RS22425 0.48 -0.1
4,984,294 - QEN71_RS22425 0.48 -0.0
4,984,294 - QEN71_RS22425 0.48 -0.0
4,984,294 - QEN71_RS22425 0.48 -1.3
4,984,402 - QEN71_RS22425 0.77 -1.2
4,984,402 - QEN71_RS22425 0.77 -0.7
4,984,402 - QEN71_RS22425 0.77 -0.1
4,984,402 - QEN71_RS22425 0.77 -0.2
4,984,402 - QEN71_RS22425 0.77 -0.1
4,984,402 - QEN71_RS22425 0.77 -0.5
4,984,402 - QEN71_RS22425 0.77 +0.1
4,984,518 + +0.1
4,984,518 + -3.5
4,984,518 + +0.1
4,984,519 - -1.1
4,984,524 + -0.1
4,984,524 + -2.2
4,984,524 + +1.2
4,984,524 + +0.2
4,984,525 - -0.6
4,984,525 - -1.8
4,984,525 - -0.1
4,984,525 - -0.2
4,984,554 + +0.2
4,984,554 + -0.6
4,984,554 + +0.7
4,984,554 + +0.1
4,984,555 - +0.9
4,984,588 + +0.1
4,984,588 + -0.5
4,984,588 + -0.4
4,984,588 + +0.6
4,984,588 + -1.3
4,984,588 + -0.3
4,984,588 + -0.9
4,984,588 + -0.6
4,984,588 + -2.3
4,984,588 + -0.4
4,984,648 + -0.9
4,984,676 + -2.3

Or see this region's nucleotide sequence