Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS21180 and QEN71_RS21185 are separated by 134 nucleotides QEN71_RS21185 and QEN71_RS21190 are separated by 37 nucleotides QEN71_RS21190 and QEN71_RS21195 are separated by 176 nucleotides QEN71_RS21195 and QEN71_RS21200 are separated by 67 nucleotides
QEN71_RS21180: QEN71_RS21180 - Lrp/AsnC family transcriptional regulator, at 4,696,733 to 4,697,197
_RS21180
QEN71_RS21185: QEN71_RS21185 - LysE family translocator, at 4,697,332 to 4,697,961
_RS21185
QEN71_RS21190: QEN71_RS21190 - DUF1289 domain-containing protein, at 4,697,999 to 4,698,172
_RS21190
QEN71_RS21195: QEN71_RS21195 - YnfA family protein, at 4,698,349 to 4,698,669
_RS21195
QEN71_RS21200: QEN71_RS21200 - DUF1993 domain-containing protein, at 4,698,737 to 4,699,249
_RS21200
Position (kb) 4697
4698
4699 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4697.051 kb on - strand, within QEN71_RS21180 at 4697.051 kb on - strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.052 kb on + strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.053 kb on - strand, within QEN71_RS21180 at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.359 kb on + strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.360 kb on - strand at 4697.548 kb on + strand, within QEN71_RS21185 at 4697.549 kb on - strand, within QEN71_RS21185 at 4697.549 kb on - strand, within QEN71_RS21185 at 4697.549 kb on - strand, within QEN71_RS21185 at 4697.563 kb on + strand, within QEN71_RS21185 at 4697.563 kb on + strand, within QEN71_RS21185 at 4697.579 kb on - strand, within QEN71_RS21185 at 4697.839 kb on + strand, within QEN71_RS21185 at 4697.839 kb on + strand, within QEN71_RS21185 at 4697.839 kb on + strand, within QEN71_RS21185 at 4697.839 kb on + strand, within QEN71_RS21185 at 4697.839 kb on + strand, within QEN71_RS21185 at 4697.839 kb on + strand, within QEN71_RS21185 at 4697.839 kb on + strand, within QEN71_RS21185 at 4697.839 kb on + strand, within QEN71_RS21185 at 4697.840 kb on - strand, within QEN71_RS21185 at 4697.840 kb on - strand, within QEN71_RS21185 at 4697.840 kb on - strand, within QEN71_RS21185 at 4697.840 kb on - strand, within QEN71_RS21185 at 4697.840 kb on - strand, within QEN71_RS21185 at 4697.840 kb on - strand, within QEN71_RS21185 at 4697.873 kb on + strand, within QEN71_RS21185 at 4697.874 kb on - strand, within QEN71_RS21185 at 4698.000 kb on + strand at 4698.000 kb on + strand at 4698.000 kb on + strand at 4698.000 kb on + strand at 4698.000 kb on + strand at 4698.000 kb on + strand at 4698.000 kb on + strand at 4698.001 kb on - strand at 4698.001 kb on - strand at 4698.001 kb on - strand at 4698.001 kb on - strand at 4698.001 kb on - strand at 4698.118 kb on - strand, within QEN71_RS21190 at 4698.151 kb on + strand, within QEN71_RS21190 at 4698.152 kb on - strand, within QEN71_RS21190 at 4698.152 kb on - strand, within QEN71_RS21190 at 4698.255 kb on + strand at 4698.255 kb on + strand at 4698.256 kb on - strand at 4698.256 kb on - strand at 4698.257 kb on + strand at 4698.257 kb on + strand at 4698.267 kb on - strand at 4698.318 kb on + strand at 4698.318 kb on + strand at 4698.318 kb on + strand at 4698.318 kb on + strand at 4698.318 kb on + strand at 4698.318 kb on + strand at 4698.318 kb on + strand at 4698.319 kb on - strand at 4698.319 kb on - strand at 4698.319 kb on - strand at 4698.319 kb on - strand at 4698.319 kb on - strand at 4698.319 kb on - strand at 4698.319 kb on - strand at 4698.319 kb on - strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.367 kb on + strand at 4698.368 kb on - strand at 4698.368 kb on - strand at 4698.368 kb on - strand at 4698.368 kb on - strand at 4698.368 kb on - strand at 4698.368 kb on - strand at 4698.368 kb on - strand at 4698.403 kb on + strand, within QEN71_RS21195 at 4698.403 kb on + strand, within QEN71_RS21195 at 4698.404 kb on - strand, within QEN71_RS21195 at 4698.447 kb on - strand, within QEN71_RS21195 at 4698.447 kb on - strand, within QEN71_RS21195 at 4698.489 kb on - strand, within QEN71_RS21195 at 4698.489 kb on - strand, within QEN71_RS21195 at 4698.523 kb on + strand, within QEN71_RS21195 at 4698.523 kb on + strand, within QEN71_RS21195 at 4698.523 kb on + strand, within QEN71_RS21195 at 4698.523 kb on + strand, within QEN71_RS21195 at 4698.523 kb on + strand, within QEN71_RS21195 at 4698.523 kb on + strand, within QEN71_RS21195 at 4698.524 kb on - strand, within QEN71_RS21195 at 4698.524 kb on - strand, within QEN71_RS21195 at 4698.524 kb on - strand, within QEN71_RS21195 at 4698.524 kb on - strand, within QEN71_RS21195 at 4698.524 kb on - strand, within QEN71_RS21195 at 4698.532 kb on + strand, within QEN71_RS21195 at 4698.532 kb on + strand, within QEN71_RS21195 at 4698.532 kb on + strand, within QEN71_RS21195 at 4698.532 kb on + strand, within QEN71_RS21195 at 4698.533 kb on - strand, within QEN71_RS21195 at 4698.544 kb on + strand, within QEN71_RS21195 at 4698.544 kb on + strand, within QEN71_RS21195 at 4698.544 kb on + strand, within QEN71_RS21195 at 4698.544 kb on + strand, within QEN71_RS21195 at 4698.544 kb on + strand, within QEN71_RS21195 at 4698.544 kb on + strand, within QEN71_RS21195 at 4698.544 kb on + strand, within QEN71_RS21195 at 4698.544 kb on + strand, within QEN71_RS21195 at 4698.544 kb on + strand, within QEN71_RS21195 at 4698.545 kb on - strand, within QEN71_RS21195 at 4698.545 kb on - strand, within QEN71_RS21195 at 4698.545 kb on - strand, within QEN71_RS21195 at 4698.545 kb on - strand, within QEN71_RS21195 at 4698.545 kb on - strand, within QEN71_RS21195 at 4698.545 kb on - strand, within QEN71_RS21195 at 4698.695 kb on + strand at 4698.695 kb on + strand at 4698.695 kb on + strand at 4698.696 kb on - strand at 4698.742 kb on + strand at 4698.742 kb on + strand at 4698.743 kb on - strand at 4698.743 kb on - strand at 4698.788 kb on - strand at 4698.804 kb on + strand, within QEN71_RS21200 at 4698.804 kb on + strand, within QEN71_RS21200 at 4698.805 kb on - strand, within QEN71_RS21200 at 4698.805 kb on - strand, within QEN71_RS21200 at 4698.805 kb on - strand, within QEN71_RS21200 at 4698.805 kb on - strand, within QEN71_RS21200 at 4698.825 kb on + strand, within QEN71_RS21200 at 4698.825 kb on + strand, within QEN71_RS21200 at 4698.825 kb on + strand, within QEN71_RS21200 at 4698.826 kb on - strand, within QEN71_RS21200 at 4698.855 kb on + strand, within QEN71_RS21200 at 4698.855 kb on + strand, within QEN71_RS21200 at 4698.855 kb on + strand, within QEN71_RS21200 at 4698.855 kb on + strand, within QEN71_RS21200 at 4698.855 kb on + strand, within QEN71_RS21200 at 4698.855 kb on + strand, within QEN71_RS21200 at 4698.856 kb on - strand, within QEN71_RS21200 at 4698.856 kb on - strand, within QEN71_RS21200 at 4698.856 kb on - strand, within QEN71_RS21200 at 4698.954 kb on + strand, within QEN71_RS21200 at 4698.955 kb on - strand, within QEN71_RS21200 at 4698.955 kb on - strand, within QEN71_RS21200 at 4698.955 kb on - strand, within QEN71_RS21200 at 4699.057 kb on + strand, within QEN71_RS21200 at 4699.057 kb on + strand, within QEN71_RS21200 at 4699.058 kb on - strand, within QEN71_RS21200
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 4,697,051 - QEN71_RS21180 0.68 -0.8 4,697,051 - QEN71_RS21180 0.68 -0.4 4,697,052 + QEN71_RS21180 0.69 -0.2 4,697,052 + QEN71_RS21180 0.69 -0.5 4,697,052 + QEN71_RS21180 0.69 -0.4 4,697,052 + QEN71_RS21180 0.69 +0.1 4,697,052 + QEN71_RS21180 0.69 +0.3 4,697,052 + QEN71_RS21180 0.69 -0.4 4,697,052 + QEN71_RS21180 0.69 +0.3 4,697,052 + QEN71_RS21180 0.69 +0.9 4,697,052 + QEN71_RS21180 0.69 -1.0 4,697,052 + QEN71_RS21180 0.69 +0.2 4,697,052 + QEN71_RS21180 0.69 +1.5 4,697,052 + QEN71_RS21180 0.69 +0.5 4,697,052 + QEN71_RS21180 0.69 +0.2 4,697,052 + QEN71_RS21180 0.69 +0.3 4,697,052 + QEN71_RS21180 0.69 -0.2 4,697,053 - QEN71_RS21180 0.69 +0.7 4,697,053 - QEN71_RS21180 0.69 -0.3 4,697,053 - QEN71_RS21180 0.69 -1.1 4,697,053 - QEN71_RS21180 0.69 -1.4 4,697,053 - QEN71_RS21180 0.69 -3.1 4,697,053 - QEN71_RS21180 0.69 -0.9 4,697,053 - QEN71_RS21180 0.69 +0.6 4,697,053 - QEN71_RS21180 0.69 -0.9 4,697,053 - QEN71_RS21180 0.69 +1.6 4,697,053 - QEN71_RS21180 0.69 +0.9 4,697,053 - QEN71_RS21180 0.69 +0.1 4,697,053 - QEN71_RS21180 0.69 -0.1 4,697,053 - QEN71_RS21180 0.69 +1.9 4,697,053 - QEN71_RS21180 0.69 -0.4 4,697,053 - QEN71_RS21180 0.69 +0.4 4,697,053 - QEN71_RS21180 0.69 -0.3 4,697,359 + -0.2 4,697,359 + +1.2 4,697,359 + -0.3 4,697,359 + +1.9 4,697,359 + +1.7 4,697,359 + -0.3 4,697,359 + +0.7 4,697,359 + -1.0 4,697,359 + -0.6 4,697,359 + -0.9 4,697,359 + -0.0 4,697,359 + -0.9 4,697,360 - +1.1 4,697,360 - -0.4 4,697,360 - +0.3 4,697,360 - -0.1 4,697,360 - +0.2 4,697,360 - -0.9 4,697,360 - -1.5 4,697,360 - -0.4 4,697,360 - +1.7 4,697,360 - -2.4 4,697,360 - +1.1 4,697,360 - -0.1 4,697,360 - +0.5 4,697,548 + QEN71_RS21185 0.34 +0.3 4,697,549 - QEN71_RS21185 0.34 -1.1 4,697,549 - QEN71_RS21185 0.34 +0.5 4,697,549 - QEN71_RS21185 0.34 +0.9 4,697,563 + QEN71_RS21185 0.37 -0.6 4,697,563 + QEN71_RS21185 0.37 -1.4 4,697,579 - QEN71_RS21185 0.39 +0.0 4,697,839 + QEN71_RS21185 0.80 +0.9 4,697,839 + QEN71_RS21185 0.80 -0.2 4,697,839 + QEN71_RS21185 0.80 +1.4 4,697,839 + QEN71_RS21185 0.80 +0.1 4,697,839 + QEN71_RS21185 0.80 -0.1 4,697,839 + QEN71_RS21185 0.80 -1.7 4,697,839 + QEN71_RS21185 0.80 -1.1 4,697,839 + QEN71_RS21185 0.80 -0.8 4,697,840 - QEN71_RS21185 0.81 -0.4 4,697,840 - QEN71_RS21185 0.81 +1.7 4,697,840 - QEN71_RS21185 0.81 -0.1 4,697,840 - QEN71_RS21185 0.81 -1.3 4,697,840 - QEN71_RS21185 0.81 -0.6 4,697,840 - QEN71_RS21185 0.81 +0.5 4,697,873 + QEN71_RS21185 0.86 -0.4 4,697,874 - QEN71_RS21185 0.86 -0.3 4,698,000 + +0.3 4,698,000 + -0.6 4,698,000 + +0.4 4,698,000 + -1.3 4,698,000 + +0.4 4,698,000 + -0.5 4,698,000 + +0.2 4,698,001 - +0.3 4,698,001 - -0.7 4,698,001 - +0.9 4,698,001 - +0.0 4,698,001 - -0.1 4,698,118 - QEN71_RS21190 0.68 +0.0 4,698,151 + QEN71_RS21190 0.87 +2.2 4,698,152 - QEN71_RS21190 0.88 +0.6 4,698,152 - QEN71_RS21190 0.88 -0.3 4,698,255 + +1.5 4,698,255 + +0.6 4,698,256 - +0.4 4,698,256 - -0.1 4,698,257 + +0.1 4,698,257 + -0.9 4,698,267 - -0.5 4,698,318 + +0.2 4,698,318 + +0.1 4,698,318 + -0.5 4,698,318 + -0.9 4,698,318 + -2.1 4,698,318 + -0.0 4,698,318 + -0.6 4,698,319 - -0.7 4,698,319 - -0.1 4,698,319 - -0.2 4,698,319 - +0.3 4,698,319 - +0.1 4,698,319 - -1.1 4,698,319 - -0.4 4,698,319 - +0.1 4,698,367 + +0.2 4,698,367 + -0.4 4,698,367 + -0.1 4,698,367 + -0.8 4,698,367 + -0.8 4,698,367 + +0.5 4,698,367 + -0.1 4,698,367 + -1.3 4,698,367 + +0.3 4,698,367 + -0.2 4,698,367 + -0.2 4,698,367 + -0.1 4,698,368 - -0.1 4,698,368 - -1.1 4,698,368 - -2.1 4,698,368 - -0.9 4,698,368 - +0.1 4,698,368 - -0.1 4,698,368 - -0.3 4,698,403 + QEN71_RS21195 0.17 -0.5 4,698,403 + QEN71_RS21195 0.17 +0.1 4,698,404 - QEN71_RS21195 0.17 -0.5 4,698,447 - QEN71_RS21195 0.31 -0.5 4,698,447 - QEN71_RS21195 0.31 +1.6 4,698,489 - QEN71_RS21195 0.44 -0.4 4,698,489 - QEN71_RS21195 0.44 -0.5 4,698,523 + QEN71_RS21195 0.54 -1.1 4,698,523 + QEN71_RS21195 0.54 -0.1 4,698,523 + QEN71_RS21195 0.54 -1.5 4,698,523 + QEN71_RS21195 0.54 -0.0 4,698,523 + QEN71_RS21195 0.54 +0.8 4,698,523 + QEN71_RS21195 0.54 +0.2 4,698,524 - QEN71_RS21195 0.55 -1.3 4,698,524 - QEN71_RS21195 0.55 +0.4 4,698,524 - QEN71_RS21195 0.55 -0.8 4,698,524 - QEN71_RS21195 0.55 -0.8 4,698,524 - QEN71_RS21195 0.55 -0.9 4,698,532 + QEN71_RS21195 0.57 +0.3 4,698,532 + QEN71_RS21195 0.57 +0.1 4,698,532 + QEN71_RS21195 0.57 +0.0 4,698,532 + QEN71_RS21195 0.57 -0.1 4,698,533 - QEN71_RS21195 0.57 -0.5 4,698,544 + QEN71_RS21195 0.61 +0.1 4,698,544 + QEN71_RS21195 0.61 -1.7 4,698,544 + QEN71_RS21195 0.61 +0.1 4,698,544 + QEN71_RS21195 0.61 -0.2 4,698,544 + QEN71_RS21195 0.61 +0.3 4,698,544 + QEN71_RS21195 0.61 -2.2 4,698,544 + QEN71_RS21195 0.61 -0.1 4,698,544 + QEN71_RS21195 0.61 -1.1 4,698,544 + QEN71_RS21195 0.61 +0.9 4,698,545 - QEN71_RS21195 0.61 -0.5 4,698,545 - QEN71_RS21195 0.61 -0.9 4,698,545 - QEN71_RS21195 0.61 -0.3 4,698,545 - QEN71_RS21195 0.61 +1.2 4,698,545 - QEN71_RS21195 0.61 -0.0 4,698,545 - QEN71_RS21195 0.61 -0.0 4,698,695 + +0.9 4,698,695 + +1.3 4,698,695 + +1.0 4,698,696 - +0.3 4,698,742 + -0.5 4,698,742 + +0.4 4,698,743 - +0.2 4,698,743 - +0.7 4,698,788 - -0.2 4,698,804 + QEN71_RS21200 0.13 -0.5 4,698,804 + QEN71_RS21200 0.13 -0.7 4,698,805 - QEN71_RS21200 0.13 +0.5 4,698,805 - QEN71_RS21200 0.13 +0.7 4,698,805 - QEN71_RS21200 0.13 -1.3 4,698,805 - QEN71_RS21200 0.13 +0.7 4,698,825 + QEN71_RS21200 0.17 -0.3 4,698,825 + QEN71_RS21200 0.17 +0.3 4,698,825 + QEN71_RS21200 0.17 +0.4 4,698,826 - QEN71_RS21200 0.17 -0.9 4,698,855 + QEN71_RS21200 0.23 -0.6 4,698,855 + QEN71_RS21200 0.23 -0.3 4,698,855 + QEN71_RS21200 0.23 -0.0 4,698,855 + QEN71_RS21200 0.23 -0.1 4,698,855 + QEN71_RS21200 0.23 +0.5 4,698,855 + QEN71_RS21200 0.23 -0.2 4,698,856 - QEN71_RS21200 0.23 -1.2 4,698,856 - QEN71_RS21200 0.23 +0.3 4,698,856 - QEN71_RS21200 0.23 -0.2 4,698,954 + QEN71_RS21200 0.42 +1.2 4,698,955 - QEN71_RS21200 0.42 +0.3 4,698,955 - QEN71_RS21200 0.42 +0.2 4,698,955 - QEN71_RS21200 0.42 +1.4 4,699,057 + QEN71_RS21200 0.62 +0.3 4,699,057 + QEN71_RS21200 0.62 -0.8 4,699,058 - QEN71_RS21200 0.63 +0.2
Or see this region's nucleotide sequence