Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11210

Experiment: Psabiae_ML3b with MT81

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11205 and QEN71_RS11210 overlap by 8 nucleotidesQEN71_RS11210 and QEN71_RS11215 are separated by 10 nucleotidesQEN71_RS11215 and QEN71_RS11220 are separated by 65 nucleotides QEN71_RS11205: QEN71_RS11205 - acetylornithine deacetylase, at 2,492,936 to 2,494,105 _RS11205 QEN71_RS11210: QEN71_RS11210 - DUF1028 domain-containing protein, at 2,494,098 to 2,494,775 _RS11210 QEN71_RS11215: QEN71_RS11215 - RidA family protein, at 2,494,786 to 2,495,220 _RS11215 QEN71_RS11220: QEN71_RS11220 - NAD(P)/FAD-dependent oxidoreductase, at 2,495,286 to 2,496,617 _RS11220 Position (kb) 2494 2495Strain fitness (log2 ratio) -2 -1 0 1at 2493.276 kb on + strand, within QEN71_RS11205at 2493.312 kb on + strand, within QEN71_RS11205at 2493.813 kb on + strand, within QEN71_RS11205at 2493.814 kb on - strand, within QEN71_RS11205at 2493.969 kb on + strand, within QEN71_RS11205at 2494.160 kb on - strandat 2494.180 kb on + strand, within QEN71_RS11210at 2494.180 kb on + strand, within QEN71_RS11210at 2494.180 kb on + strand, within QEN71_RS11210at 2494.181 kb on - strand, within QEN71_RS11210at 2494.462 kb on + strand, within QEN71_RS11210at 2494.463 kb on - strand, within QEN71_RS11210at 2494.463 kb on - strand, within QEN71_RS11210at 2494.926 kb on - strand, within QEN71_RS11215at 2495.108 kb on + strand, within QEN71_RS11215at 2495.108 kb on + strand, within QEN71_RS11215at 2495.108 kb on + strand, within QEN71_RS11215at 2495.109 kb on - strand, within QEN71_RS11215at 2495.109 kb on - strand, within QEN71_RS11215at 2495.116 kb on - strand, within QEN71_RS11215at 2495.209 kb on - strandat 2495.209 kb on - strandat 2495.372 kb on - strandat 2495.581 kb on + strand, within QEN71_RS11220at 2495.582 kb on - strand, within QEN71_RS11220at 2495.752 kb on + strand, within QEN71_RS11220at 2495.753 kb on - strand, within QEN71_RS11220

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Per-strain Table

Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81
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2,493,276 + QEN71_RS11205 0.29 +0.6
2,493,312 + QEN71_RS11205 0.32 +0.7
2,493,813 + QEN71_RS11205 0.75 -0.2
2,493,814 - QEN71_RS11205 0.75 -0.0
2,493,969 + QEN71_RS11205 0.88 -0.1
2,494,160 - -0.1
2,494,180 + QEN71_RS11210 0.12 +0.6
2,494,180 + QEN71_RS11210 0.12 +1.2
2,494,180 + QEN71_RS11210 0.12 +0.4
2,494,181 - QEN71_RS11210 0.12 +0.8
2,494,462 + QEN71_RS11210 0.54 +0.1
2,494,463 - QEN71_RS11210 0.54 +0.5
2,494,463 - QEN71_RS11210 0.54 +0.3
2,494,926 - QEN71_RS11215 0.32 -0.0
2,495,108 + QEN71_RS11215 0.74 -0.4
2,495,108 + QEN71_RS11215 0.74 -0.2
2,495,108 + QEN71_RS11215 0.74 -0.6
2,495,109 - QEN71_RS11215 0.74 -2.2
2,495,109 - QEN71_RS11215 0.74 -0.8
2,495,116 - QEN71_RS11215 0.76 -0.4
2,495,209 - -0.1
2,495,209 - +0.1
2,495,372 - +1.5
2,495,581 + QEN71_RS11220 0.22 +0.9
2,495,582 - QEN71_RS11220 0.22 -0.1
2,495,752 + QEN71_RS11220 0.35 +0.3
2,495,753 - QEN71_RS11220 0.35 -0.1

Or see this region's nucleotide sequence