Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS08680 and QEN71_RS08685 are separated by 20 nucleotides QEN71_RS08685 and QEN71_RS08690 overlap by 17 nucleotides QEN71_RS08690 and QEN71_RS08695 are separated by 3 nucleotides QEN71_RS08695 and QEN71_RS08700 overlap by 4 nucleotides
QEN71_RS08680: QEN71_RS08680 - response regulator transcription factor, at 1,942,225 to 1,942,911
_RS08680
QEN71_RS08685: QEN71_RS08685 - 5,6-dimethylbenzimidazole synthase, at 1,942,932 to 1,943,636
_RS08685
QEN71_RS08690: QEN71_RS08690 - cobyrinate a,c-diamide synthase, at 1,943,620 to 1,944,924
_RS08690
QEN71_RS08695: QEN71_RS08695 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,944,928 to 1,945,530
_RS08695
QEN71_RS08700: QEN71_RS08700 - cobalamin biosynthesis protein, at 1,945,527 to 1,945,946
_RS08700
Position (kb) 1943
1944
1945 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1942.740 kb on + strand, within QEN71_RS08680 at 1942.741 kb on - strand, within QEN71_RS08680 at 1942.741 kb on - strand, within QEN71_RS08680 at 1942.741 kb on - strand, within QEN71_RS08680 at 1942.741 kb on - strand, within QEN71_RS08680 at 1942.741 kb on - strand, within QEN71_RS08680 at 1942.786 kb on - strand, within QEN71_RS08680 at 1942.864 kb on + strand at 1942.864 kb on + strand at 1942.865 kb on - strand at 1942.865 kb on - strand at 1942.865 kb on - strand at 1942.933 kb on + strand at 1942.961 kb on + strand at 1942.961 kb on + strand at 1942.962 kb on - strand at 1942.962 kb on - strand at 1943.080 kb on + strand, within QEN71_RS08685 at 1943.081 kb on - strand, within QEN71_RS08685 at 1943.106 kb on + strand, within QEN71_RS08685 at 1943.106 kb on + strand, within QEN71_RS08685 at 1943.107 kb on - strand, within QEN71_RS08685 at 1943.107 kb on - strand, within QEN71_RS08685 at 1943.107 kb on - strand, within QEN71_RS08685 at 1943.107 kb on - strand, within QEN71_RS08685 at 1943.107 kb on - strand, within QEN71_RS08685 at 1943.107 kb on - strand, within QEN71_RS08685 at 1943.137 kb on - strand, within QEN71_RS08685 at 1943.283 kb on + strand, within QEN71_RS08685 at 1943.283 kb on + strand, within QEN71_RS08685 at 1943.283 kb on + strand, within QEN71_RS08685 at 1943.284 kb on - strand, within QEN71_RS08685 at 1943.284 kb on - strand, within QEN71_RS08685 at 1943.284 kb on - strand, within QEN71_RS08685 at 1943.284 kb on - strand, within QEN71_RS08685 at 1943.284 kb on - strand, within QEN71_RS08685 at 1943.284 kb on - strand, within QEN71_RS08685 at 1943.485 kb on + strand, within QEN71_RS08685 at 1943.486 kb on - strand, within QEN71_RS08685 at 1943.486 kb on - strand, within QEN71_RS08685 at 1943.486 kb on - strand, within QEN71_RS08685 at 1943.486 kb on - strand, within QEN71_RS08685 at 1943.584 kb on + strand at 1943.585 kb on - strand at 1943.585 kb on - strand at 1943.585 kb on - strand at 1943.622 kb on - strand at 1943.687 kb on + strand at 1943.687 kb on + strand at 1943.687 kb on + strand at 1943.687 kb on + strand at 1943.687 kb on + strand at 1943.687 kb on + strand at 1943.687 kb on + strand at 1943.687 kb on + strand at 1943.687 kb on + strand at 1943.687 kb on + strand at 1943.687 kb on + strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.688 kb on - strand at 1943.792 kb on + strand, within QEN71_RS08690 at 1943.793 kb on - strand, within QEN71_RS08690 at 1943.948 kb on + strand, within QEN71_RS08690 at 1943.948 kb on + strand, within QEN71_RS08690 at 1943.948 kb on + strand, within QEN71_RS08690 at 1943.948 kb on + strand, within QEN71_RS08690 at 1943.948 kb on + strand, within QEN71_RS08690 at 1943.948 kb on + strand, within QEN71_RS08690 at 1943.948 kb on + strand, within QEN71_RS08690 at 1943.948 kb on + strand, within QEN71_RS08690 at 1943.949 kb on - strand, within QEN71_RS08690 at 1943.949 kb on - strand, within QEN71_RS08690 at 1943.949 kb on - strand, within QEN71_RS08690 at 1944.075 kb on - strand, within QEN71_RS08690 at 1944.075 kb on - strand, within QEN71_RS08690 at 1944.075 kb on - strand, within QEN71_RS08690 at 1944.125 kb on + strand, within QEN71_RS08690 at 1944.125 kb on + strand, within QEN71_RS08690 at 1944.126 kb on - strand, within QEN71_RS08690 at 1944.126 kb on - strand, within QEN71_RS08690 at 1944.126 kb on - strand, within QEN71_RS08690 at 1944.173 kb on + strand, within QEN71_RS08690 at 1944.174 kb on - strand, within QEN71_RS08690 at 1944.413 kb on + strand, within QEN71_RS08690 at 1944.414 kb on - strand, within QEN71_RS08690 at 1944.493 kb on + strand, within QEN71_RS08690 at 1944.493 kb on + strand, within QEN71_RS08690 at 1944.700 kb on + strand, within QEN71_RS08690 at 1944.748 kb on + strand, within QEN71_RS08690 at 1944.748 kb on + strand, within QEN71_RS08690 at 1944.749 kb on - strand, within QEN71_RS08690 at 1944.749 kb on - strand, within QEN71_RS08690 at 1945.048 kb on + strand, within QEN71_RS08695 at 1945.048 kb on + strand, within QEN71_RS08695 at 1945.112 kb on + strand, within QEN71_RS08695 at 1945.113 kb on - strand, within QEN71_RS08695 at 1945.118 kb on + strand, within QEN71_RS08695 at 1945.118 kb on + strand, within QEN71_RS08695 at 1945.118 kb on + strand, within QEN71_RS08695 at 1945.119 kb on - strand, within QEN71_RS08695 at 1945.131 kb on + strand, within QEN71_RS08695 at 1945.132 kb on - strand, within QEN71_RS08695 at 1945.160 kb on + strand, within QEN71_RS08695 at 1945.250 kb on + strand, within QEN71_RS08695 at 1945.251 kb on - strand, within QEN71_RS08695 at 1945.757 kb on + strand, within QEN71_RS08700 at 1945.757 kb on + strand, within QEN71_RS08700 at 1945.757 kb on + strand, within QEN71_RS08700 at 1945.758 kb on - strand, within QEN71_RS08700 at 1945.758 kb on - strand, within QEN71_RS08700 at 1945.758 kb on - strand, within QEN71_RS08700 at 1945.758 kb on - strand, within QEN71_RS08700 at 1945.758 kb on - strand, within QEN71_RS08700
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 1,942,740 + QEN71_RS08680 0.75 +0.5 1,942,741 - QEN71_RS08680 0.75 -1.7 1,942,741 - QEN71_RS08680 0.75 -0.4 1,942,741 - QEN71_RS08680 0.75 +1.3 1,942,741 - QEN71_RS08680 0.75 +1.5 1,942,741 - QEN71_RS08680 0.75 +0.4 1,942,786 - QEN71_RS08680 0.82 -0.1 1,942,864 + -0.2 1,942,864 + -1.0 1,942,865 - -0.1 1,942,865 - +0.5 1,942,865 - -1.0 1,942,933 + +0.6 1,942,961 + +1.3 1,942,961 + +0.6 1,942,962 - -0.4 1,942,962 - -1.1 1,943,080 + QEN71_RS08685 0.21 +0.1 1,943,081 - QEN71_RS08685 0.21 +0.9 1,943,106 + QEN71_RS08685 0.25 +0.7 1,943,106 + QEN71_RS08685 0.25 -0.6 1,943,107 - QEN71_RS08685 0.25 -0.8 1,943,107 - QEN71_RS08685 0.25 -0.8 1,943,107 - QEN71_RS08685 0.25 -1.0 1,943,107 - QEN71_RS08685 0.25 +0.3 1,943,107 - QEN71_RS08685 0.25 +0.2 1,943,107 - QEN71_RS08685 0.25 -0.9 1,943,137 - QEN71_RS08685 0.29 +0.0 1,943,283 + QEN71_RS08685 0.50 +0.8 1,943,283 + QEN71_RS08685 0.50 +1.2 1,943,283 + QEN71_RS08685 0.50 +1.1 1,943,284 - QEN71_RS08685 0.50 -0.3 1,943,284 - QEN71_RS08685 0.50 -1.2 1,943,284 - QEN71_RS08685 0.50 +0.2 1,943,284 - QEN71_RS08685 0.50 -0.0 1,943,284 - QEN71_RS08685 0.50 +0.2 1,943,284 - QEN71_RS08685 0.50 -2.0 1,943,485 + QEN71_RS08685 0.78 +0.6 1,943,486 - QEN71_RS08685 0.79 -0.1 1,943,486 - QEN71_RS08685 0.79 -0.1 1,943,486 - QEN71_RS08685 0.79 -0.3 1,943,486 - QEN71_RS08685 0.79 -0.1 1,943,584 + -0.4 1,943,585 - -1.7 1,943,585 - -0.9 1,943,585 - +0.6 1,943,622 - -0.1 1,943,687 + -0.4 1,943,687 + -1.3 1,943,687 + -0.4 1,943,687 + -0.2 1,943,687 + +0.7 1,943,687 + -0.5 1,943,687 + -0.6 1,943,687 + -2.3 1,943,687 + +0.5 1,943,687 + +1.3 1,943,687 + +0.1 1,943,688 - -1.8 1,943,688 - -0.1 1,943,688 - -0.9 1,943,688 - -0.7 1,943,688 - +0.6 1,943,688 - +0.3 1,943,688 - +0.7 1,943,688 - -0.1 1,943,688 - -0.2 1,943,688 - -1.0 1,943,688 - -0.7 1,943,688 - -0.8 1,943,688 - -0.1 1,943,792 + QEN71_RS08690 0.13 -0.8 1,943,793 - QEN71_RS08690 0.13 -0.0 1,943,948 + QEN71_RS08690 0.25 -0.4 1,943,948 + QEN71_RS08690 0.25 -0.1 1,943,948 + QEN71_RS08690 0.25 +0.0 1,943,948 + QEN71_RS08690 0.25 +0.1 1,943,948 + QEN71_RS08690 0.25 +0.1 1,943,948 + QEN71_RS08690 0.25 -1.0 1,943,948 + QEN71_RS08690 0.25 -1.3 1,943,948 + QEN71_RS08690 0.25 -0.4 1,943,949 - QEN71_RS08690 0.25 +0.3 1,943,949 - QEN71_RS08690 0.25 +0.4 1,943,949 - QEN71_RS08690 0.25 -0.5 1,944,075 - QEN71_RS08690 0.35 -0.1 1,944,075 - QEN71_RS08690 0.35 -1.1 1,944,075 - QEN71_RS08690 0.35 +0.3 1,944,125 + QEN71_RS08690 0.39 -0.6 1,944,125 + QEN71_RS08690 0.39 +0.3 1,944,126 - QEN71_RS08690 0.39 -1.2 1,944,126 - QEN71_RS08690 0.39 -1.2 1,944,126 - QEN71_RS08690 0.39 -0.1 1,944,173 + QEN71_RS08690 0.42 -0.3 1,944,174 - QEN71_RS08690 0.42 -0.4 1,944,413 + QEN71_RS08690 0.61 +0.5 1,944,414 - QEN71_RS08690 0.61 -1.4 1,944,493 + QEN71_RS08690 0.67 -0.6 1,944,493 + QEN71_RS08690 0.67 +1.2 1,944,700 + QEN71_RS08690 0.83 -0.4 1,944,748 + QEN71_RS08690 0.86 +0.2 1,944,748 + QEN71_RS08690 0.86 +0.7 1,944,749 - QEN71_RS08690 0.87 -1.1 1,944,749 - QEN71_RS08690 0.87 -0.3 1,945,048 + QEN71_RS08695 0.20 -0.7 1,945,048 + QEN71_RS08695 0.20 -0.9 1,945,112 + QEN71_RS08695 0.31 +0.5 1,945,113 - QEN71_RS08695 0.31 +0.6 1,945,118 + QEN71_RS08695 0.32 -0.6 1,945,118 + QEN71_RS08695 0.32 -1.8 1,945,118 + QEN71_RS08695 0.32 -0.6 1,945,119 - QEN71_RS08695 0.32 +0.3 1,945,131 + QEN71_RS08695 0.34 -0.4 1,945,132 - QEN71_RS08695 0.34 -2.8 1,945,160 + QEN71_RS08695 0.38 +0.1 1,945,250 + QEN71_RS08695 0.53 +0.9 1,945,251 - QEN71_RS08695 0.54 +0.1 1,945,757 + QEN71_RS08700 0.55 +0.5 1,945,757 + QEN71_RS08700 0.55 -0.9 1,945,757 + QEN71_RS08700 0.55 -0.3 1,945,758 - QEN71_RS08700 0.55 -0.1 1,945,758 - QEN71_RS08700 0.55 -0.7 1,945,758 - QEN71_RS08700 0.55 -0.8 1,945,758 - QEN71_RS08700 0.55 -0.3 1,945,758 - QEN71_RS08700 0.55 +0.3
Or see this region's nucleotide sequence