Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05985

Experiment: Psabiae_ML3b with MT81

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05980 and QEN71_RS05985 are separated by 86 nucleotidesQEN71_RS05985 and QEN71_RS05990 are separated by 68 nucleotides QEN71_RS05980: QEN71_RS05980 - histidine--tRNA ligase, at 1,325,283 to 1,326,623 _RS05980 QEN71_RS05985: QEN71_RS05985 - tetratricopeptide repeat protein, at 1,326,710 to 1,327,336 _RS05985 QEN71_RS05990: QEN71_RS05990 - outer membrane protein assembly factor BamB, at 1,327,405 to 1,328,550 _RS05990 Position (kb) 1326 1327 1328Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1326.580 kb on + strandat 1326.580 kb on + strandat 1326.580 kb on + strandat 1326.678 kb on + strandat 1326.678 kb on + strandat 1326.678 kb on + strandat 1326.678 kb on + strandat 1326.678 kb on + strandat 1326.681 kb on + strandat 1326.681 kb on + strandat 1326.681 kb on + strandat 1326.716 kb on + strandat 1326.716 kb on + strandat 1326.836 kb on + strand, within QEN71_RS05985at 1326.875 kb on + strand, within QEN71_RS05985at 1326.875 kb on + strand, within QEN71_RS05985at 1326.875 kb on + strand, within QEN71_RS05985at 1326.875 kb on + strand, within QEN71_RS05985at 1326.875 kb on + strand, within QEN71_RS05985at 1327.007 kb on + strand, within QEN71_RS05985at 1327.007 kb on + strand, within QEN71_RS05985at 1327.007 kb on + strand, within QEN71_RS05985at 1327.007 kb on + strand, within QEN71_RS05985at 1327.007 kb on + strand, within QEN71_RS05985at 1327.007 kb on + strand, within QEN71_RS05985at 1327.250 kb on + strand, within QEN71_RS05985at 1327.250 kb on + strand, within QEN71_RS05985at 1327.250 kb on + strand, within QEN71_RS05985at 1327.380 kb on + strandat 1327.380 kb on + strandat 1327.380 kb on + strandat 1327.380 kb on + strandat 1327.380 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strandat 1327.387 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81
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1,326,580 + +0.0
1,326,580 + +0.3
1,326,580 + -0.6
1,326,678 + -0.9
1,326,678 + +2.0
1,326,678 + -0.4
1,326,678 + -0.9
1,326,678 + -0.5
1,326,681 + +0.2
1,326,681 + +1.0
1,326,681 + +0.9
1,326,716 + -1.2
1,326,716 + +0.3
1,326,836 + QEN71_RS05985 0.20 -0.7
1,326,875 + QEN71_RS05985 0.26 +1.0
1,326,875 + QEN71_RS05985 0.26 +0.2
1,326,875 + QEN71_RS05985 0.26 -0.4
1,326,875 + QEN71_RS05985 0.26 -0.0
1,326,875 + QEN71_RS05985 0.26 -0.8
1,327,007 + QEN71_RS05985 0.47 -1.0
1,327,007 + QEN71_RS05985 0.47 +0.1
1,327,007 + QEN71_RS05985 0.47 -3.1
1,327,007 + QEN71_RS05985 0.47 -0.6
1,327,007 + QEN71_RS05985 0.47 +0.6
1,327,007 + QEN71_RS05985 0.47 -1.2
1,327,250 + QEN71_RS05985 0.86 -1.5
1,327,250 + QEN71_RS05985 0.86 -0.8
1,327,250 + QEN71_RS05985 0.86 -0.0
1,327,380 + -0.1
1,327,380 + -0.4
1,327,380 + -0.4
1,327,380 + +0.4
1,327,380 + +2.0
1,327,387 + -0.0
1,327,387 + +0.2
1,327,387 + -0.4
1,327,387 + +1.0
1,327,387 + +0.4
1,327,387 + +1.0
1,327,387 + -0.4
1,327,387 + +1.2
1,327,387 + -0.8
1,327,387 + -0.2
1,327,387 + -0.0
1,327,387 + -1.2
1,327,387 + -0.1
1,327,387 + -0.0
1,327,387 + -1.6
1,327,387 + -1.6
1,327,387 + -1.0

Or see this region's nucleotide sequence