Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS05840 and QEN71_RS05845 are separated by 306 nucleotides QEN71_RS05845 and QEN71_RS05850 overlap by 8 nucleotides QEN71_RS05850 and QEN71_RS05855 are separated by 36 nucleotides
QEN71_RS05840: QEN71_RS05840 - regulator, at 1,295,954 to 1,297,048
_RS05840
QEN71_RS05845: QEN71_RS05845 - lipoprotein-releasing ABC transporter permease subunit, at 1,297,355 to 1,298,608
_RS05845
QEN71_RS05850: QEN71_RS05850 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 1,298,601 to 1,299,344
_RS05850
QEN71_RS05855: QEN71_RS05855 - TatD family hydrolase, at 1,299,381 to 1,300,169
_RS05855
Position (kb)
1297
1298
1299 Strain fitness (log2 ratio)
-2
-1
0
1 at 1296.579 kb on + strand, within QEN71_RS05840 at 1296.580 kb on - strand, within QEN71_RS05840 at 1296.792 kb on + strand, within QEN71_RS05840 at 1296.792 kb on + strand, within QEN71_RS05840 at 1296.792 kb on + strand, within QEN71_RS05840 at 1296.793 kb on - strand, within QEN71_RS05840 at 1296.963 kb on + strand at 1296.963 kb on + strand at 1296.964 kb on - strand at 1296.964 kb on - strand at 1296.964 kb on - strand at 1297.008 kb on - strand at 1297.051 kb on + strand at 1297.051 kb on + strand at 1297.051 kb on + strand at 1297.051 kb on + strand at 1297.051 kb on + strand at 1297.051 kb on + strand at 1297.052 kb on - strand at 1297.052 kb on - strand at 1297.119 kb on + strand at 1297.119 kb on + strand at 1297.119 kb on + strand at 1297.120 kb on - strand at 1297.120 kb on - strand at 1297.120 kb on - strand at 1297.242 kb on + strand at 1298.600 kb on + strand at 1299.318 kb on + strand at 1299.318 kb on + strand at 1299.319 kb on - strand at 1299.319 kb on - strand at 1299.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 1,296,579 + QEN71_RS05840 0.57 -0.0 1,296,580 - QEN71_RS05840 0.57 -1.2 1,296,792 + QEN71_RS05840 0.77 -0.6 1,296,792 + QEN71_RS05840 0.77 -2.0 1,296,792 + QEN71_RS05840 0.77 -0.2 1,296,793 - QEN71_RS05840 0.77 -0.4 1,296,963 + -0.0 1,296,963 + -0.0 1,296,964 - -1.9 1,296,964 - -0.6 1,296,964 - -0.4 1,297,008 - -2.0 1,297,051 + +0.8 1,297,051 + -0.9 1,297,051 + -0.8 1,297,051 + -0.0 1,297,051 + +1.2 1,297,051 + +0.1 1,297,052 - +0.4 1,297,052 - -0.9 1,297,119 + +0.4 1,297,119 + -1.0 1,297,119 + +0.5 1,297,120 - +0.4 1,297,120 - +1.7 1,297,120 - +1.5 1,297,242 + +0.4 1,298,600 + +1.6 1,299,318 + -0.6 1,299,318 + +0.2 1,299,319 - -0.6 1,299,319 - +0.4 1,299,393 - +0.1
Or see this region's nucleotide sequence