Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05490

Experiment: Psabiae_ML3b with MT81

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05485 and QEN71_RS05490 are separated by 28 nucleotidesQEN71_RS05490 and QEN71_RS05495 are separated by 264 nucleotides QEN71_RS05485: QEN71_RS05485 - EamA family transporter, at 1,214,081 to 1,215,001 _RS05485 QEN71_RS05490: QEN71_RS05490 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 1,215,030 to 1,217,078 _RS05490 QEN71_RS05495: QEN71_RS05495 - DUF4397 domain-containing protein, at 1,217,343 to 1,218,131 _RS05495 Position (kb) 1215 1216 1217 1218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1214.036 kb on - strandat 1214.165 kb on + strandat 1214.166 kb on - strandat 1214.166 kb on - strandat 1214.166 kb on - strandat 1214.166 kb on - strandat 1214.166 kb on - strandat 1214.166 kb on - strandat 1214.166 kb on - strandat 1214.166 kb on - strandat 1214.166 kb on - strandat 1214.166 kb on - strandat 1214.167 kb on + strandat 1214.168 kb on - strandat 1214.186 kb on + strand, within QEN71_RS05485at 1214.187 kb on - strand, within QEN71_RS05485at 1214.187 kb on - strand, within QEN71_RS05485at 1214.187 kb on - strand, within QEN71_RS05485at 1214.291 kb on - strand, within QEN71_RS05485at 1214.763 kb on - strand, within QEN71_RS05485at 1214.763 kb on - strand, within QEN71_RS05485at 1214.763 kb on - strand, within QEN71_RS05485at 1214.792 kb on + strand, within QEN71_RS05485at 1214.792 kb on + strand, within QEN71_RS05485at 1214.792 kb on + strand, within QEN71_RS05485at 1214.793 kb on - strand, within QEN71_RS05485at 1214.793 kb on - strand, within QEN71_RS05485at 1214.793 kb on - strand, within QEN71_RS05485at 1214.793 kb on - strand, within QEN71_RS05485at 1214.802 kb on - strand, within QEN71_RS05485at 1214.821 kb on + strand, within QEN71_RS05485at 1214.822 kb on - strand, within QEN71_RS05485at 1214.822 kb on - strand, within QEN71_RS05485at 1214.852 kb on + strand, within QEN71_RS05485at 1214.852 kb on + strand, within QEN71_RS05485at 1214.852 kb on + strand, within QEN71_RS05485at 1214.852 kb on + strand, within QEN71_RS05485at 1214.852 kb on + strand, within QEN71_RS05485at 1214.852 kb on + strand, within QEN71_RS05485at 1214.852 kb on + strand, within QEN71_RS05485at 1214.852 kb on + strand, within QEN71_RS05485at 1214.852 kb on + strand, within QEN71_RS05485at 1214.852 kb on + strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.853 kb on - strand, within QEN71_RS05485at 1214.999 kb on + strandat 1215.031 kb on + strandat 1215.031 kb on + strandat 1215.032 kb on - strandat 1215.169 kb on + strandat 1215.169 kb on + strandat 1215.170 kb on - strandat 1215.280 kb on + strand, within QEN71_RS05490at 1215.280 kb on + strand, within QEN71_RS05490at 1215.280 kb on + strand, within QEN71_RS05490at 1215.281 kb on - strand, within QEN71_RS05490at 1215.613 kb on + strand, within QEN71_RS05490at 1215.613 kb on + strand, within QEN71_RS05490at 1215.613 kb on + strand, within QEN71_RS05490at 1215.614 kb on - strand, within QEN71_RS05490at 1215.723 kb on + strand, within QEN71_RS05490at 1215.723 kb on + strand, within QEN71_RS05490at 1215.723 kb on + strand, within QEN71_RS05490at 1215.724 kb on - strand, within QEN71_RS05490at 1215.762 kb on + strand, within QEN71_RS05490at 1215.762 kb on + strand, within QEN71_RS05490at 1215.762 kb on + strand, within QEN71_RS05490at 1215.762 kb on + strand, within QEN71_RS05490at 1215.763 kb on - strand, within QEN71_RS05490at 1215.763 kb on - strand, within QEN71_RS05490at 1215.763 kb on - strand, within QEN71_RS05490at 1215.830 kb on + strand, within QEN71_RS05490at 1215.831 kb on - strand, within QEN71_RS05490at 1215.976 kb on + strand, within QEN71_RS05490at 1215.976 kb on + strand, within QEN71_RS05490at 1215.976 kb on + strand, within QEN71_RS05490at 1215.976 kb on + strand, within QEN71_RS05490at 1215.976 kb on + strand, within QEN71_RS05490at 1215.977 kb on - strand, within QEN71_RS05490at 1216.400 kb on + strand, within QEN71_RS05490at 1216.400 kb on + strand, within QEN71_RS05490at 1216.401 kb on - strand, within QEN71_RS05490at 1216.439 kb on - strand, within QEN71_RS05490at 1216.528 kb on + strand, within QEN71_RS05490at 1216.579 kb on + strand, within QEN71_RS05490at 1216.579 kb on + strand, within QEN71_RS05490at 1216.579 kb on + strand, within QEN71_RS05490at 1216.579 kb on + strand, within QEN71_RS05490at 1216.579 kb on + strand, within QEN71_RS05490at 1216.580 kb on - strand, within QEN71_RS05490at 1216.580 kb on - strand, within QEN71_RS05490at 1216.612 kb on + strand, within QEN71_RS05490at 1216.750 kb on + strand, within QEN71_RS05490at 1216.756 kb on + strand, within QEN71_RS05490at 1216.969 kb on + strandat 1216.969 kb on + strandat 1216.969 kb on + strandat 1216.969 kb on + strandat 1216.997 kb on + strandat 1216.998 kb on - strandat 1217.036 kb on + strandat 1217.036 kb on + strandat 1217.037 kb on - strandat 1217.039 kb on - strandat 1217.092 kb on + strandat 1217.092 kb on + strandat 1217.092 kb on + strandat 1217.092 kb on + strandat 1217.092 kb on + strandat 1217.093 kb on - strandat 1217.093 kb on - strandat 1217.093 kb on - strandat 1217.093 kb on - strandat 1217.093 kb on - strandat 1217.093 kb on - strandat 1217.093 kb on - strandat 1217.093 kb on - strandat 1217.115 kb on + strandat 1217.116 kb on - strandat 1217.153 kb on + strandat 1217.153 kb on + strandat 1217.190 kb on + strandat 1217.191 kb on - strandat 1217.191 kb on - strandat 1217.307 kb on + strandat 1217.307 kb on + strandat 1217.307 kb on + strandat 1217.535 kb on + strand, within QEN71_RS05495at 1217.535 kb on + strand, within QEN71_RS05495at 1217.535 kb on + strand, within QEN71_RS05495at 1217.535 kb on + strand, within QEN71_RS05495at 1217.536 kb on - strand, within QEN71_RS05495at 1217.589 kb on + strand, within QEN71_RS05495at 1217.589 kb on + strand, within QEN71_RS05495at 1217.590 kb on - strand, within QEN71_RS05495at 1217.590 kb on - strand, within QEN71_RS05495at 1217.590 kb on - strand, within QEN71_RS05495at 1217.590 kb on - strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.796 kb on + strand, within QEN71_RS05495at 1217.796 kb on + strand, within QEN71_RS05495at 1217.797 kb on - strand, within QEN71_RS05495at 1217.797 kb on - strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.899 kb on - strand, within QEN71_RS05495at 1217.899 kb on - strand, within QEN71_RS05495at 1217.899 kb on - strand, within QEN71_RS05495at 1217.899 kb on - strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495

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Per-strain Table

Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81
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1,214,036 - +2.0
1,214,165 + -0.2
1,214,166 - +0.2
1,214,166 - -0.3
1,214,166 - -0.5
1,214,166 - +1.2
1,214,166 - +0.3
1,214,166 - +1.0
1,214,166 - +0.6
1,214,166 - +1.5
1,214,166 - -0.2
1,214,166 - +0.2
1,214,167 + +0.2
1,214,168 - -0.4
1,214,186 + QEN71_RS05485 0.11 -0.6
1,214,187 - QEN71_RS05485 0.12 -0.8
1,214,187 - QEN71_RS05485 0.12 -0.6
1,214,187 - QEN71_RS05485 0.12 +0.2
1,214,291 - QEN71_RS05485 0.23 -0.4
1,214,763 - QEN71_RS05485 0.74 -0.5
1,214,763 - QEN71_RS05485 0.74 +0.2
1,214,763 - QEN71_RS05485 0.74 +0.5
1,214,792 + QEN71_RS05485 0.77 -1.3
1,214,792 + QEN71_RS05485 0.77 -0.3
1,214,792 + QEN71_RS05485 0.77 -0.6
1,214,793 - QEN71_RS05485 0.77 -0.4
1,214,793 - QEN71_RS05485 0.77 -0.5
1,214,793 - QEN71_RS05485 0.77 -0.2
1,214,793 - QEN71_RS05485 0.77 +0.8
1,214,802 - QEN71_RS05485 0.78 -1.4
1,214,821 + QEN71_RS05485 0.80 +0.2
1,214,822 - QEN71_RS05485 0.80 -0.8
1,214,822 - QEN71_RS05485 0.80 +0.3
1,214,852 + QEN71_RS05485 0.84 -2.3
1,214,852 + QEN71_RS05485 0.84 -0.8
1,214,852 + QEN71_RS05485 0.84 +1.2
1,214,852 + QEN71_RS05485 0.84 -0.8
1,214,852 + QEN71_RS05485 0.84 +0.3
1,214,852 + QEN71_RS05485 0.84 +1.2
1,214,852 + QEN71_RS05485 0.84 +0.7
1,214,852 + QEN71_RS05485 0.84 +0.2
1,214,852 + QEN71_RS05485 0.84 -0.1
1,214,852 + QEN71_RS05485 0.84 -0.4
1,214,853 - QEN71_RS05485 0.84 -0.0
1,214,853 - QEN71_RS05485 0.84 +0.0
1,214,853 - QEN71_RS05485 0.84 +0.2
1,214,853 - QEN71_RS05485 0.84 +0.6
1,214,853 - QEN71_RS05485 0.84 -0.6
1,214,853 - QEN71_RS05485 0.84 +0.4
1,214,853 - QEN71_RS05485 0.84 -0.7
1,214,853 - QEN71_RS05485 0.84 -0.2
1,214,853 - QEN71_RS05485 0.84 +0.2
1,214,853 - QEN71_RS05485 0.84 +0.2
1,214,853 - QEN71_RS05485 0.84 -0.1
1,214,999 + +0.2
1,215,031 + -0.1
1,215,031 + +0.4
1,215,032 - -0.7
1,215,169 + +0.2
1,215,169 + +0.3
1,215,170 - -0.6
1,215,280 + QEN71_RS05490 0.12 +0.2
1,215,280 + QEN71_RS05490 0.12 -0.6
1,215,280 + QEN71_RS05490 0.12 -1.0
1,215,281 - QEN71_RS05490 0.12 -0.4
1,215,613 + QEN71_RS05490 0.28 +2.0
1,215,613 + QEN71_RS05490 0.28 +0.8
1,215,613 + QEN71_RS05490 0.28 +0.4
1,215,614 - QEN71_RS05490 0.29 -1.6
1,215,723 + QEN71_RS05490 0.34 -0.9
1,215,723 + QEN71_RS05490 0.34 +2.3
1,215,723 + QEN71_RS05490 0.34 +0.3
1,215,724 - QEN71_RS05490 0.34 -0.1
1,215,762 + QEN71_RS05490 0.36 -0.1
1,215,762 + QEN71_RS05490 0.36 -0.6
1,215,762 + QEN71_RS05490 0.36 -1.4
1,215,762 + QEN71_RS05490 0.36 +0.3
1,215,763 - QEN71_RS05490 0.36 +0.2
1,215,763 - QEN71_RS05490 0.36 +0.4
1,215,763 - QEN71_RS05490 0.36 +0.0
1,215,830 + QEN71_RS05490 0.39 +0.3
1,215,831 - QEN71_RS05490 0.39 +0.2
1,215,976 + QEN71_RS05490 0.46 +0.9
1,215,976 + QEN71_RS05490 0.46 +0.2
1,215,976 + QEN71_RS05490 0.46 -2.0
1,215,976 + QEN71_RS05490 0.46 +0.3
1,215,976 + QEN71_RS05490 0.46 +0.2
1,215,977 - QEN71_RS05490 0.46 +1.6
1,216,400 + QEN71_RS05490 0.67 -0.2
1,216,400 + QEN71_RS05490 0.67 -0.0
1,216,401 - QEN71_RS05490 0.67 +0.4
1,216,439 - QEN71_RS05490 0.69 +0.4
1,216,528 + QEN71_RS05490 0.73 -0.1
1,216,579 + QEN71_RS05490 0.76 -1.6
1,216,579 + QEN71_RS05490 0.76 -0.7
1,216,579 + QEN71_RS05490 0.76 +0.3
1,216,579 + QEN71_RS05490 0.76 -0.0
1,216,579 + QEN71_RS05490 0.76 -0.4
1,216,580 - QEN71_RS05490 0.76 +0.5
1,216,580 - QEN71_RS05490 0.76 -0.0
1,216,612 + QEN71_RS05490 0.77 +0.4
1,216,750 + QEN71_RS05490 0.84 +0.4
1,216,756 + QEN71_RS05490 0.84 +0.2
1,216,969 + -0.6
1,216,969 + +0.2
1,216,969 + -1.2
1,216,969 + -0.0
1,216,997 + -0.1
1,216,998 - -0.9
1,217,036 + +1.3
1,217,036 + -0.4
1,217,037 - -0.6
1,217,039 - +2.0
1,217,092 + +0.1
1,217,092 + -0.6
1,217,092 + -0.5
1,217,092 + +0.5
1,217,092 + +0.0
1,217,093 - +0.6
1,217,093 - -0.2
1,217,093 - -0.6
1,217,093 - -0.4
1,217,093 - +2.0
1,217,093 - +0.4
1,217,093 - +0.6
1,217,093 - -1.3
1,217,115 + +1.2
1,217,116 - -0.4
1,217,153 + +0.3
1,217,153 + +1.0
1,217,190 + +0.5
1,217,191 - -0.9
1,217,191 - -0.7
1,217,307 + -0.8
1,217,307 + +0.2
1,217,307 + -0.4
1,217,535 + QEN71_RS05495 0.24 -0.2
1,217,535 + QEN71_RS05495 0.24 +0.4
1,217,535 + QEN71_RS05495 0.24 -0.1
1,217,535 + QEN71_RS05495 0.24 -0.1
1,217,536 - QEN71_RS05495 0.24 -0.1
1,217,589 + QEN71_RS05495 0.31 +1.0
1,217,589 + QEN71_RS05495 0.31 -1.5
1,217,590 - QEN71_RS05495 0.31 +1.6
1,217,590 - QEN71_RS05495 0.31 -0.8
1,217,590 - QEN71_RS05495 0.31 -0.9
1,217,590 - QEN71_RS05495 0.31 +0.5
1,217,658 + QEN71_RS05495 0.40 -1.9
1,217,658 + QEN71_RS05495 0.40 +0.6
1,217,658 + QEN71_RS05495 0.40 -0.7
1,217,658 + QEN71_RS05495 0.40 -0.9
1,217,658 + QEN71_RS05495 0.40 -0.2
1,217,658 + QEN71_RS05495 0.40 +0.6
1,217,796 + QEN71_RS05495 0.57 -0.4
1,217,796 + QEN71_RS05495 0.57 -0.2
1,217,797 - QEN71_RS05495 0.58 +0.1
1,217,797 - QEN71_RS05495 0.58 +0.5
1,217,898 + QEN71_RS05495 0.70 +0.1
1,217,898 + QEN71_RS05495 0.70 +1.0
1,217,898 + QEN71_RS05495 0.70 +0.7
1,217,898 + QEN71_RS05495 0.70 +0.4
1,217,898 + QEN71_RS05495 0.70 -0.2
1,217,898 + QEN71_RS05495 0.70 -1.0
1,217,899 - QEN71_RS05495 0.70 +1.0
1,217,899 - QEN71_RS05495 0.70 +0.3
1,217,899 - QEN71_RS05495 0.70 -0.0
1,217,899 - QEN71_RS05495 0.70 -0.2
1,217,916 + QEN71_RS05495 0.73 -0.2
1,217,916 + QEN71_RS05495 0.73 +0.5
1,217,916 + QEN71_RS05495 0.73 -0.4
1,217,916 + QEN71_RS05495 0.73 -0.3
1,217,916 + QEN71_RS05495 0.73 -1.5
1,217,916 + QEN71_RS05495 0.73 -0.5
1,217,916 + QEN71_RS05495 0.73 -0.5
1,217,916 + QEN71_RS05495 0.73 +0.2
1,217,916 + QEN71_RS05495 0.73 +0.4
1,217,916 + QEN71_RS05495 0.73 +0.2
1,217,917 - QEN71_RS05495 0.73 -0.8
1,217,917 - QEN71_RS05495 0.73 -0.5
1,217,917 - QEN71_RS05495 0.73 -0.2
1,217,917 - QEN71_RS05495 0.73 -0.5
1,217,917 - QEN71_RS05495 0.73 -0.2
1,217,917 - QEN71_RS05495 0.73 -0.0
1,217,917 - QEN71_RS05495 0.73 -1.2
1,217,917 - QEN71_RS05495 0.73 +0.2
1,217,917 - QEN71_RS05495 0.73 -1.2
1,217,917 - QEN71_RS05495 0.73 -1.5
1,217,917 - QEN71_RS05495 0.73 +1.4
1,217,917 - QEN71_RS05495 0.73 +0.5
1,217,917 - QEN71_RS05495 0.73 -0.1
1,217,917 - QEN71_RS05495 0.73 -1.5
1,217,917 - QEN71_RS05495 0.73 -3.1
1,217,917 - QEN71_RS05495 0.73 +0.1

Or see this region's nucleotide sequence