Experiment: Psabiae_ML3b with MT81
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03525 and QEN71_RS03530 are separated by 258 nucleotides QEN71_RS03530 and QEN71_RS03535 are separated by 283 nucleotides QEN71_RS03535 and QEN71_RS03540 are separated by 272 nucleotides
QEN71_RS03525: QEN71_RS03525 - cell division topological specificity factor MinE, at 787,886 to 788,140
_RS03525
QEN71_RS03530: QEN71_RS03530 - YXWGXW repeat-containing protein, at 788,399 to 788,710
_RS03530
QEN71_RS03535: QEN71_RS03535 - chloride channel protein, at 788,994 to 790,391
_RS03535
QEN71_RS03540: QEN71_RS03540 - lipopolysaccharide heptosyltransferase I, at 790,664 to 791,671
_RS03540
Position (kb) 788
789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 788.166 kb on + strand at 788.166 kb on + strand at 788.166 kb on + strand at 788.166 kb on + strand at 788.166 kb on + strand at 788.167 kb on - strand at 788.167 kb on - strand at 788.167 kb on - strand at 788.167 kb on - strand at 788.167 kb on - strand at 788.314 kb on + strand at 788.314 kb on + strand at 788.555 kb on + strand, within QEN71_RS03530 at 788.555 kb on + strand, within QEN71_RS03530 at 788.555 kb on + strand, within QEN71_RS03530 at 788.556 kb on - strand, within QEN71_RS03530 at 788.556 kb on - strand, within QEN71_RS03530 at 788.556 kb on - strand, within QEN71_RS03530 at 788.556 kb on - strand, within QEN71_RS03530 at 788.597 kb on + strand, within QEN71_RS03530 at 788.639 kb on + strand, within QEN71_RS03530 at 788.639 kb on + strand, within QEN71_RS03530 at 788.741 kb on - strand at 788.794 kb on + strand at 788.794 kb on + strand at 788.903 kb on + strand at 788.903 kb on + strand at 788.903 kb on + strand at 788.904 kb on - strand at 788.904 kb on - strand at 788.904 kb on - strand at 788.904 kb on - strand at 788.906 kb on + strand at 788.906 kb on + strand at 788.906 kb on + strand at 788.906 kb on + strand at 788.906 kb on + strand at 788.907 kb on - strand at 788.930 kb on + strand at 788.930 kb on + strand at 788.930 kb on + strand at 788.931 kb on - strand at 788.995 kb on + strand at 788.995 kb on + strand at 788.995 kb on + strand at 788.996 kb on - strand at 788.996 kb on - strand at 788.996 kb on - strand at 788.996 kb on - strand at 789.107 kb on + strand at 789.107 kb on + strand at 789.107 kb on + strand at 789.107 kb on + strand at 789.107 kb on + strand at 789.108 kb on - strand at 789.108 kb on - strand at 789.108 kb on - strand at 789.108 kb on - strand at 789.108 kb on - strand at 789.109 kb on + strand at 789.109 kb on + strand at 789.109 kb on + strand at 789.109 kb on + strand at 789.109 kb on + strand at 789.109 kb on + strand at 789.109 kb on + strand at 789.110 kb on - strand at 789.110 kb on - strand at 789.110 kb on - strand at 789.110 kb on - strand at 789.110 kb on - strand at 789.110 kb on - strand at 789.130 kb on + strand at 789.131 kb on - strand at 789.131 kb on - strand at 789.131 kb on - strand at 789.271 kb on + strand, within QEN71_RS03535 at 789.272 kb on - strand, within QEN71_RS03535 at 789.400 kb on + strand, within QEN71_RS03535 at 789.400 kb on + strand, within QEN71_RS03535 at 789.401 kb on - strand, within QEN71_RS03535 at 789.401 kb on - strand, within QEN71_RS03535 at 789.401 kb on - strand, within QEN71_RS03535 at 789.436 kb on + strand, within QEN71_RS03535 at 789.436 kb on + strand, within QEN71_RS03535 at 789.436 kb on + strand, within QEN71_RS03535 at 789.463 kb on + strand, within QEN71_RS03535 at 789.464 kb on - strand, within QEN71_RS03535 at 789.464 kb on - strand, within QEN71_RS03535 at 789.464 kb on - strand, within QEN71_RS03535 at 789.488 kb on - strand, within QEN71_RS03535 at 789.617 kb on + strand, within QEN71_RS03535 at 789.733 kb on + strand, within QEN71_RS03535 at 789.733 kb on + strand, within QEN71_RS03535 at 789.733 kb on + strand, within QEN71_RS03535 at 789.733 kb on + strand, within QEN71_RS03535 at 789.733 kb on + strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 790.061 kb on + strand, within QEN71_RS03535 at 790.061 kb on + strand, within QEN71_RS03535 at 790.062 kb on - strand, within QEN71_RS03535 at 790.252 kb on + strand at 790.252 kb on + strand at 790.253 kb on - strand at 790.253 kb on - strand at 790.258 kb on + strand at 790.277 kb on - strand at 790.277 kb on - strand at 790.327 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.466 kb on - strand at 790.466 kb on - strand at 790.466 kb on - strand at 790.466 kb on - strand at 790.466 kb on - strand at 790.466 kb on - strand at 790.467 kb on + strand at 790.467 kb on + strand at 790.467 kb on + strand at 790.467 kb on + strand at 790.467 kb on + strand at 790.468 kb on - strand at 790.468 kb on - strand at 790.468 kb on - strand at 790.468 kb on - strand at 790.544 kb on + strand at 790.544 kb on + strand at 790.544 kb on + strand at 790.544 kb on + strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.560 kb on + strand at 790.560 kb on + strand at 790.561 kb on - strand at 790.710 kb on + strand at 790.710 kb on + strand at 790.711 kb on - strand at 790.711 kb on - strand at 790.711 kb on - strand at 790.711 kb on - strand at 790.723 kb on + strand at 790.922 kb on + strand, within QEN71_RS03540 at 790.923 kb on - strand, within QEN71_RS03540 at 790.952 kb on + strand, within QEN71_RS03540 at 790.952 kb on + strand, within QEN71_RS03540 at 790.953 kb on - strand, within QEN71_RS03540 at 791.147 kb on + strand, within QEN71_RS03540 at 791.148 kb on - strand, within QEN71_RS03540 at 791.148 kb on - strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.365 kb on - strand, within QEN71_RS03540 at 791.365 kb on - strand, within QEN71_RS03540 at 791.365 kb on - strand, within QEN71_RS03540 at 791.365 kb on - strand, within QEN71_RS03540 at 791.365 kb on - strand, within QEN71_RS03540
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT81 remove 788,166 + -0.4 788,166 + -0.0 788,166 + +1.0 788,166 + -2.2 788,166 + +0.7 788,167 - -0.1 788,167 - -0.0 788,167 - +0.2 788,167 - -0.2 788,167 - +1.2 788,314 + +1.6 788,314 + +0.3 788,555 + QEN71_RS03530 0.50 -0.7 788,555 + QEN71_RS03530 0.50 +0.0 788,555 + QEN71_RS03530 0.50 -1.0 788,556 - QEN71_RS03530 0.50 -0.3 788,556 - QEN71_RS03530 0.50 -0.6 788,556 - QEN71_RS03530 0.50 -0.6 788,556 - QEN71_RS03530 0.50 +1.3 788,597 + QEN71_RS03530 0.63 +0.8 788,639 + QEN71_RS03530 0.77 -0.2 788,639 + QEN71_RS03530 0.77 -2.2 788,741 - +0.8 788,794 + -0.7 788,794 + +0.2 788,903 + -0.4 788,903 + +0.1 788,903 + -0.9 788,904 - +0.1 788,904 - +1.6 788,904 - -0.4 788,904 - -0.1 788,906 + +0.3 788,906 + -1.1 788,906 + -0.3 788,906 + -0.9 788,906 + +1.0 788,907 - -0.8 788,930 + -0.9 788,930 + +1.4 788,930 + -0.5 788,931 - +0.6 788,995 + -0.5 788,995 + +0.2 788,995 + -0.7 788,996 - +0.5 788,996 - -0.8 788,996 - -0.3 788,996 - +0.8 789,107 + -1.6 789,107 + -0.3 789,107 + +0.4 789,107 + +0.2 789,107 + +0.9 789,108 - -0.1 789,108 - +1.0 789,108 - -0.9 789,108 - -0.4 789,108 - +1.2 789,109 + +1.7 789,109 + +2.3 789,109 + -1.2 789,109 + +0.6 789,109 + +0.5 789,109 + +0.9 789,109 + +0.4 789,110 - +0.3 789,110 - -0.3 789,110 - -0.6 789,110 - -1.1 789,110 - +0.1 789,110 - +1.3 789,130 + -0.1 789,131 - +2.0 789,131 - -0.2 789,131 - -0.1 789,271 + QEN71_RS03535 0.20 +0.9 789,272 - QEN71_RS03535 0.20 +0.6 789,400 + QEN71_RS03535 0.29 -0.7 789,400 + QEN71_RS03535 0.29 +0.7 789,401 - QEN71_RS03535 0.29 -1.0 789,401 - QEN71_RS03535 0.29 +0.2 789,401 - QEN71_RS03535 0.29 +0.1 789,436 + QEN71_RS03535 0.32 -0.5 789,436 + QEN71_RS03535 0.32 +0.4 789,436 + QEN71_RS03535 0.32 +0.7 789,463 + QEN71_RS03535 0.34 -0.3 789,464 - QEN71_RS03535 0.34 -0.6 789,464 - QEN71_RS03535 0.34 +0.3 789,464 - QEN71_RS03535 0.34 -0.8 789,488 - QEN71_RS03535 0.35 -2.8 789,617 + QEN71_RS03535 0.45 +1.0 789,733 + QEN71_RS03535 0.53 +1.0 789,733 + QEN71_RS03535 0.53 +0.1 789,733 + QEN71_RS03535 0.53 -0.0 789,733 + QEN71_RS03535 0.53 +0.1 789,733 + QEN71_RS03535 0.53 -0.1 789,734 - QEN71_RS03535 0.53 +0.2 789,734 - QEN71_RS03535 0.53 -0.3 789,734 - QEN71_RS03535 0.53 -0.5 789,734 - QEN71_RS03535 0.53 +0.7 789,734 - QEN71_RS03535 0.53 +0.2 789,734 - QEN71_RS03535 0.53 +0.4 789,739 + QEN71_RS03535 0.53 +0.6 789,739 + QEN71_RS03535 0.53 +0.2 789,739 + QEN71_RS03535 0.53 +0.1 789,739 + QEN71_RS03535 0.53 -0.0 789,739 + QEN71_RS03535 0.53 +0.1 789,739 + QEN71_RS03535 0.53 -1.0 789,739 + QEN71_RS03535 0.53 +0.1 789,739 + QEN71_RS03535 0.53 -0.1 789,739 + QEN71_RS03535 0.53 -0.0 789,739 + QEN71_RS03535 0.53 +0.1 789,740 - QEN71_RS03535 0.53 -0.2 789,740 - QEN71_RS03535 0.53 +0.3 789,740 - QEN71_RS03535 0.53 -0.7 789,740 - QEN71_RS03535 0.53 +0.3 789,740 - QEN71_RS03535 0.53 -0.2 789,740 - QEN71_RS03535 0.53 -0.7 789,740 - QEN71_RS03535 0.53 +0.4 789,740 - QEN71_RS03535 0.53 -0.4 789,740 - QEN71_RS03535 0.53 -0.3 789,740 - QEN71_RS03535 0.53 -1.0 789,740 - QEN71_RS03535 0.53 -0.1 790,061 + QEN71_RS03535 0.76 -0.8 790,061 + QEN71_RS03535 0.76 +0.1 790,062 - QEN71_RS03535 0.76 +0.8 790,252 + -0.0 790,252 + +0.6 790,253 - -0.1 790,253 - -1.4 790,258 + -0.0 790,277 - -0.6 790,277 - -0.1 790,327 + -0.5 790,465 + -0.8 790,465 + +1.1 790,465 + +0.2 790,465 + -0.0 790,465 + +0.3 790,465 + +0.2 790,465 + -0.4 790,465 + -0.7 790,465 + +0.9 790,465 + -1.3 790,465 + +1.0 790,465 + +0.1 790,466 - -1.6 790,466 - -0.3 790,466 - +0.3 790,466 - -1.7 790,466 - +0.3 790,466 - +1.0 790,467 + +0.3 790,467 + +0.2 790,467 + -0.4 790,467 + +0.5 790,467 + +1.6 790,468 - -1.5 790,468 - -0.7 790,468 - +0.5 790,468 - +1.0 790,544 + -0.3 790,544 + -1.5 790,544 + -0.5 790,544 + -0.5 790,545 - +0.9 790,545 - +0.2 790,545 - +0.6 790,545 - -0.3 790,545 - +1.4 790,545 - -0.0 790,545 - -0.3 790,560 + +0.1 790,560 + -0.1 790,561 - +0.4 790,710 + +1.7 790,710 + +1.6 790,711 - -0.5 790,711 - -0.4 790,711 - -0.5 790,711 - -1.8 790,723 + -1.5 790,922 + QEN71_RS03540 0.26 -1.5 790,923 - QEN71_RS03540 0.26 +0.6 790,952 + QEN71_RS03540 0.29 +0.2 790,952 + QEN71_RS03540 0.29 +0.6 790,953 - QEN71_RS03540 0.29 -0.0 791,147 + QEN71_RS03540 0.48 -1.3 791,148 - QEN71_RS03540 0.48 -1.0 791,148 - QEN71_RS03540 0.48 +0.7 791,214 + QEN71_RS03540 0.55 +0.1 791,214 + QEN71_RS03540 0.55 +0.8 791,214 + QEN71_RS03540 0.55 +0.1 791,214 + QEN71_RS03540 0.55 -0.8 791,214 + QEN71_RS03540 0.55 +1.0 791,214 + QEN71_RS03540 0.55 -0.2 791,214 + QEN71_RS03540 0.55 -0.1 791,215 - QEN71_RS03540 0.55 -0.7 791,215 - QEN71_RS03540 0.55 -0.0 791,215 - QEN71_RS03540 0.55 -0.7 791,215 - QEN71_RS03540 0.55 +0.1 791,215 - QEN71_RS03540 0.55 -0.3 791,215 - QEN71_RS03540 0.55 -0.3 791,215 - QEN71_RS03540 0.55 -0.2 791,364 + QEN71_RS03540 0.69 -0.0 791,364 + QEN71_RS03540 0.69 -2.5 791,364 + QEN71_RS03540 0.69 +1.4 791,364 + QEN71_RS03540 0.69 -0.2 791,364 + QEN71_RS03540 0.69 -1.3 791,364 + QEN71_RS03540 0.69 +0.3 791,365 - QEN71_RS03540 0.70 -1.1 791,365 - QEN71_RS03540 0.70 -0.4 791,365 - QEN71_RS03540 0.70 -0.1 791,365 - QEN71_RS03540 0.70 -0.2 791,365 - QEN71_RS03540 0.70 -0.4
Or see this region's nucleotide sequence