Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00240

Experiment: biofilm; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00230 and LRK53_RS00235 are separated by 92 nucleotidesLRK53_RS00235 and LRK53_RS00240 are separated by 24 nucleotidesLRK53_RS00240 and LRK53_RS00245 are separated by 26 nucleotidesLRK53_RS00245 and LRK53_RS00250 are separated by 95 nucleotides LRK53_RS00230: LRK53_RS00230 - GH92 family glycosyl hydrolase, at 56,070 to 59,453 _RS00230 LRK53_RS00235: LRK53_RS00235 - 2OG-Fe(II) oxygenase, at 59,546 to 60,157 _RS00235 LRK53_RS00240: LRK53_RS00240 - DUF3820 family protein, at 60,182 to 60,400 _RS00240 LRK53_RS00245: LRK53_RS00245 - class I SAM-dependent methyltransferase, at 60,427 to 61,239 _RS00245 LRK53_RS00250: LRK53_RS00250 - AAA family ATPase, at 61,335 to 62,807 _RS00250 Position (kb) 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 59.288 kb on + strandat 59.288 kb on + strandat 59.288 kb on + strandat 59.289 kb on - strandat 59.364 kb on + strandat 59.364 kb on + strandat 59.364 kb on + strandat 59.364 kb on + strandat 59.364 kb on + strandat 59.364 kb on + strandat 59.364 kb on + strandat 59.365 kb on - strandat 59.365 kb on - strandat 59.365 kb on - strandat 59.365 kb on - strandat 59.365 kb on - strandat 59.452 kb on - strandat 59.452 kb on - strandat 59.703 kb on + strand, within LRK53_RS00235at 59.703 kb on + strand, within LRK53_RS00235at 59.703 kb on + strand, within LRK53_RS00235at 59.703 kb on + strand, within LRK53_RS00235at 59.703 kb on + strand, within LRK53_RS00235at 59.703 kb on + strand, within LRK53_RS00235at 59.704 kb on - strand, within LRK53_RS00235at 59.704 kb on - strand, within LRK53_RS00235at 59.704 kb on - strand, within LRK53_RS00235at 59.704 kb on - strand, within LRK53_RS00235at 59.704 kb on - strand, within LRK53_RS00235at 59.704 kb on - strand, within LRK53_RS00235at 59.751 kb on + strand, within LRK53_RS00235at 59.752 kb on - strand, within LRK53_RS00235at 59.752 kb on - strand, within LRK53_RS00235at 59.752 kb on - strand, within LRK53_RS00235at 59.752 kb on - strand, within LRK53_RS00235at 59.752 kb on - strand, within LRK53_RS00235at 59.752 kb on - strand, within LRK53_RS00235at 59.752 kb on - strand, within LRK53_RS00235at 59.752 kb on - strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.829 kb on + strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.830 kb on - strand, within LRK53_RS00235at 59.838 kb on + strand, within LRK53_RS00235at 59.839 kb on - strand, within LRK53_RS00235at 60.002 kb on + strand, within LRK53_RS00235at 60.003 kb on - strand, within LRK53_RS00235at 60.003 kb on - strand, within LRK53_RS00235at 60.033 kb on + strand, within LRK53_RS00235at 60.033 kb on + strand, within LRK53_RS00235at 60.033 kb on + strand, within LRK53_RS00235at 60.034 kb on - strand, within LRK53_RS00235at 60.034 kb on - strand, within LRK53_RS00235at 60.034 kb on - strand, within LRK53_RS00235at 60.034 kb on - strand, within LRK53_RS00235at 60.034 kb on - strand, within LRK53_RS00235at 60.034 kb on - strand, within LRK53_RS00235at 60.034 kb on - strand, within LRK53_RS00235at 60.043 kb on + strand, within LRK53_RS00235at 60.043 kb on + strand, within LRK53_RS00235at 60.043 kb on + strand, within LRK53_RS00235at 60.043 kb on + strand, within LRK53_RS00235at 60.043 kb on + strand, within LRK53_RS00235at 60.043 kb on + strand, within LRK53_RS00235at 60.043 kb on + strand, within LRK53_RS00235at 60.043 kb on + strand, within LRK53_RS00235at 60.044 kb on - strand, within LRK53_RS00235at 60.044 kb on - strand, within LRK53_RS00235at 60.044 kb on - strand, within LRK53_RS00235at 60.044 kb on - strand, within LRK53_RS00235at 60.168 kb on + strandat 60.168 kb on + strandat 60.168 kb on + strandat 60.169 kb on - strandat 60.169 kb on - strandat 60.309 kb on + strand, within LRK53_RS00240at 60.309 kb on + strand, within LRK53_RS00240at 60.309 kb on + strand, within LRK53_RS00240at 60.309 kb on + strand, within LRK53_RS00240at 60.309 kb on + strand, within LRK53_RS00240at 60.310 kb on - strand, within LRK53_RS00240at 60.310 kb on - strand, within LRK53_RS00240at 60.310 kb on - strand, within LRK53_RS00240at 60.310 kb on - strand, within LRK53_RS00240at 60.345 kb on + strand, within LRK53_RS00240at 60.345 kb on + strand, within LRK53_RS00240at 60.345 kb on + strand, within LRK53_RS00240at 60.345 kb on + strand, within LRK53_RS00240at 60.345 kb on + strand, within LRK53_RS00240at 60.345 kb on + strand, within LRK53_RS00240at 60.345 kb on + strand, within LRK53_RS00240at 60.345 kb on + strand, within LRK53_RS00240at 60.345 kb on + strand, within LRK53_RS00240at 60.345 kb on + strand, within LRK53_RS00240at 60.346 kb on - strand, within LRK53_RS00240at 60.346 kb on - strand, within LRK53_RS00240at 60.346 kb on - strand, within LRK53_RS00240at 60.346 kb on - strand, within LRK53_RS00240at 60.346 kb on - strand, within LRK53_RS00240at 60.346 kb on - strand, within LRK53_RS00240at 60.346 kb on - strand, within LRK53_RS00240at 60.346 kb on - strand, within LRK53_RS00240at 60.346 kb on - strand, within LRK53_RS00240at 60.346 kb on - strand, within LRK53_RS00240at 60.408 kb on + strandat 60.408 kb on + strandat 60.408 kb on + strandat 60.408 kb on + strandat 60.408 kb on + strandat 60.408 kb on + strandat 60.408 kb on + strandat 60.408 kb on + strandat 60.408 kb on + strandat 60.408 kb on + strandat 60.409 kb on - strandat 60.409 kb on - strandat 60.409 kb on - strandat 60.564 kb on + strand, within LRK53_RS00245at 60.565 kb on - strand, within LRK53_RS00245at 60.565 kb on - strand, within LRK53_RS00245at 60.565 kb on - strand, within LRK53_RS00245at 60.620 kb on + strand, within LRK53_RS00245at 60.620 kb on + strand, within LRK53_RS00245at 60.620 kb on + strand, within LRK53_RS00245at 60.620 kb on + strand, within LRK53_RS00245at 60.620 kb on + strand, within LRK53_RS00245at 60.620 kb on + strand, within LRK53_RS00245at 60.620 kb on + strand, within LRK53_RS00245at 60.621 kb on - strand, within LRK53_RS00245at 60.621 kb on - strand, within LRK53_RS00245at 60.621 kb on - strand, within LRK53_RS00245at 60.621 kb on - strand, within LRK53_RS00245at 60.621 kb on - strand, within LRK53_RS00245at 60.621 kb on - strand, within LRK53_RS00245at 60.621 kb on - strand, within LRK53_RS00245at 60.621 kb on - strand, within LRK53_RS00245at 60.881 kb on + strand, within LRK53_RS00245at 60.881 kb on + strand, within LRK53_RS00245at 60.882 kb on - strand, within LRK53_RS00245at 60.882 kb on - strand, within LRK53_RS00245at 60.989 kb on + strand, within LRK53_RS00245at 60.989 kb on + strand, within LRK53_RS00245at 60.989 kb on + strand, within LRK53_RS00245at 60.989 kb on + strand, within LRK53_RS00245at 60.989 kb on + strand, within LRK53_RS00245at 60.989 kb on + strand, within LRK53_RS00245at 60.990 kb on - strand, within LRK53_RS00245at 60.990 kb on - strand, within LRK53_RS00245at 60.990 kb on - strand, within LRK53_RS00245at 60.990 kb on - strand, within LRK53_RS00245at 61.227 kb on + strandat 61.227 kb on + strandat 61.227 kb on + strandat 61.228 kb on - strandat 61.228 kb on - strandat 61.228 kb on - strandat 61.228 kb on - strandat 61.228 kb on - strandat 61.274 kb on - strandat 61.274 kb on - strandat 61.383 kb on + strandat 61.383 kb on + strandat 61.383 kb on + strandat 61.384 kb on - strandat 61.384 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM;
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59,288 + +0.1
59,288 + -0.3
59,288 + -1.7
59,289 - -2.0
59,364 + -1.0
59,364 + -0.4
59,364 + -0.6
59,364 + -0.5
59,364 + +1.6
59,364 + +0.0
59,364 + -0.3
59,365 - +0.5
59,365 - +1.4
59,365 - -1.0
59,365 - +0.4
59,365 - +1.0
59,452 - -1.6
59,452 - +0.6
59,703 + LRK53_RS00235 0.26 -0.2
59,703 + LRK53_RS00235 0.26 +0.4
59,703 + LRK53_RS00235 0.26 -3.0
59,703 + LRK53_RS00235 0.26 -0.6
59,703 + LRK53_RS00235 0.26 -0.7
59,703 + LRK53_RS00235 0.26 -1.2
59,704 - LRK53_RS00235 0.26 +0.6
59,704 - LRK53_RS00235 0.26 -1.2
59,704 - LRK53_RS00235 0.26 -1.0
59,704 - LRK53_RS00235 0.26 -0.8
59,704 - LRK53_RS00235 0.26 -0.6
59,704 - LRK53_RS00235 0.26 -1.2
59,751 + LRK53_RS00235 0.33 -0.4
59,752 - LRK53_RS00235 0.34 -0.7
59,752 - LRK53_RS00235 0.34 -1.5
59,752 - LRK53_RS00235 0.34 -0.8
59,752 - LRK53_RS00235 0.34 +0.3
59,752 - LRK53_RS00235 0.34 -1.1
59,752 - LRK53_RS00235 0.34 +0.3
59,752 - LRK53_RS00235 0.34 +2.1
59,752 - LRK53_RS00235 0.34 +1.0
59,829 + LRK53_RS00235 0.46 -0.7
59,829 + LRK53_RS00235 0.46 -0.5
59,829 + LRK53_RS00235 0.46 -0.9
59,829 + LRK53_RS00235 0.46 +0.4
59,829 + LRK53_RS00235 0.46 -1.7
59,829 + LRK53_RS00235 0.46 -0.6
59,829 + LRK53_RS00235 0.46 +1.0
59,829 + LRK53_RS00235 0.46 -0.2
59,829 + LRK53_RS00235 0.46 -1.3
59,829 + LRK53_RS00235 0.46 -0.4
59,829 + LRK53_RS00235 0.46 -0.2
59,829 + LRK53_RS00235 0.46 +1.6
59,829 + LRK53_RS00235 0.46 -0.1
59,829 + LRK53_RS00235 0.46 -0.5
59,829 + LRK53_RS00235 0.46 -0.5
59,829 + LRK53_RS00235 0.46 -1.9
59,829 + LRK53_RS00235 0.46 -2.0
59,829 + LRK53_RS00235 0.46 -1.3
59,829 + LRK53_RS00235 0.46 -1.1
59,829 + LRK53_RS00235 0.46 +0.1
59,829 + LRK53_RS00235 0.46 -1.0
59,829 + LRK53_RS00235 0.46 -1.3
59,829 + LRK53_RS00235 0.46 +0.1
59,829 + LRK53_RS00235 0.46 -1.4
59,829 + LRK53_RS00235 0.46 +3.2
59,829 + LRK53_RS00235 0.46 +0.1
59,829 + LRK53_RS00235 0.46 +0.6
59,829 + LRK53_RS00235 0.46 +0.6
59,829 + LRK53_RS00235 0.46 +0.4
59,829 + LRK53_RS00235 0.46 -0.2
59,829 + LRK53_RS00235 0.46 +3.0
59,829 + LRK53_RS00235 0.46 -2.1
59,830 - LRK53_RS00235 0.46 +0.1
59,830 - LRK53_RS00235 0.46 -1.2
59,830 - LRK53_RS00235 0.46 -1.3
59,830 - LRK53_RS00235 0.46 -2.6
59,830 - LRK53_RS00235 0.46 -2.1
59,830 - LRK53_RS00235 0.46 -0.2
59,830 - LRK53_RS00235 0.46 -0.6
59,830 - LRK53_RS00235 0.46 -0.3
59,830 - LRK53_RS00235 0.46 +0.4
59,830 - LRK53_RS00235 0.46 -0.3
59,830 - LRK53_RS00235 0.46 -0.6
59,830 - LRK53_RS00235 0.46 -0.7
59,830 - LRK53_RS00235 0.46 +0.4
59,830 - LRK53_RS00235 0.46 +0.1
59,830 - LRK53_RS00235 0.46 +0.6
59,830 - LRK53_RS00235 0.46 -2.4
59,830 - LRK53_RS00235 0.46 +0.5
59,830 - LRK53_RS00235 0.46 -1.4
59,830 - LRK53_RS00235 0.46 +0.1
59,830 - LRK53_RS00235 0.46 -1.0
59,830 - LRK53_RS00235 0.46 +0.6
59,830 - LRK53_RS00235 0.46 -1.3
59,830 - LRK53_RS00235 0.46 -1.0
59,838 + LRK53_RS00235 0.48 -1.2
59,839 - LRK53_RS00235 0.48 -1.1
60,002 + LRK53_RS00235 0.75 -0.0
60,003 - LRK53_RS00235 0.75 -1.2
60,003 - LRK53_RS00235 0.75 -2.0
60,033 + LRK53_RS00235 0.80 -1.7
60,033 + LRK53_RS00235 0.80 -1.2
60,033 + LRK53_RS00235 0.80 -0.9
60,034 - LRK53_RS00235 0.80 -1.2
60,034 - LRK53_RS00235 0.80 -1.2
60,034 - LRK53_RS00235 0.80 +0.6
60,034 - LRK53_RS00235 0.80 +0.4
60,034 - LRK53_RS00235 0.80 -0.6
60,034 - LRK53_RS00235 0.80 +2.7
60,034 - LRK53_RS00235 0.80 -0.0
60,043 + LRK53_RS00235 0.81 -1.2
60,043 + LRK53_RS00235 0.81 -1.8
60,043 + LRK53_RS00235 0.81 -0.2
60,043 + LRK53_RS00235 0.81 -0.9
60,043 + LRK53_RS00235 0.81 +1.4
60,043 + LRK53_RS00235 0.81 +1.1
60,043 + LRK53_RS00235 0.81 -3.0
60,043 + LRK53_RS00235 0.81 -0.0
60,044 - LRK53_RS00235 0.81 +1.1
60,044 - LRK53_RS00235 0.81 -0.2
60,044 - LRK53_RS00235 0.81 +0.6
60,044 - LRK53_RS00235 0.81 -1.0
60,168 + +0.6
60,168 + -1.0
60,168 + +0.4
60,169 - -0.5
60,169 - -1.3
60,309 + LRK53_RS00240 0.58 -1.6
60,309 + LRK53_RS00240 0.58 -2.1
60,309 + LRK53_RS00240 0.58 +2.0
60,309 + LRK53_RS00240 0.58 -1.2
60,309 + LRK53_RS00240 0.58 -1.4
60,310 - LRK53_RS00240 0.58 -0.4
60,310 - LRK53_RS00240 0.58 -0.4
60,310 - LRK53_RS00240 0.58 -0.9
60,310 - LRK53_RS00240 0.58 -2.0
60,345 + LRK53_RS00240 0.74 -2.6
60,345 + LRK53_RS00240 0.74 -1.1
60,345 + LRK53_RS00240 0.74 -0.6
60,345 + LRK53_RS00240 0.74 -0.0
60,345 + LRK53_RS00240 0.74 -2.0
60,345 + LRK53_RS00240 0.74 -0.0
60,345 + LRK53_RS00240 0.74 -0.7
60,345 + LRK53_RS00240 0.74 +0.2
60,345 + LRK53_RS00240 0.74 -1.2
60,345 + LRK53_RS00240 0.74 -0.3
60,346 - LRK53_RS00240 0.75 +1.0
60,346 - LRK53_RS00240 0.75 -3.1
60,346 - LRK53_RS00240 0.75 -1.6
60,346 - LRK53_RS00240 0.75 -0.7
60,346 - LRK53_RS00240 0.75 +0.3
60,346 - LRK53_RS00240 0.75 -0.7
60,346 - LRK53_RS00240 0.75 +0.1
60,346 - LRK53_RS00240 0.75 -1.0
60,346 - LRK53_RS00240 0.75 +1.0
60,346 - LRK53_RS00240 0.75 -0.4
60,408 + +0.3
60,408 + -0.9
60,408 + -2.5
60,408 + -2.0
60,408 + +0.3
60,408 + +0.9
60,408 + -0.0
60,408 + -0.4
60,408 + +0.3
60,408 + -2.8
60,409 - -1.6
60,409 - +0.3
60,409 - -0.4
60,564 + LRK53_RS00245 0.17 -1.0
60,565 - LRK53_RS00245 0.17 -0.5
60,565 - LRK53_RS00245 0.17 -0.6
60,565 - LRK53_RS00245 0.17 +0.1
60,620 + LRK53_RS00245 0.24 -0.5
60,620 + LRK53_RS00245 0.24 -2.2
60,620 + LRK53_RS00245 0.24 -1.8
60,620 + LRK53_RS00245 0.24 -1.5
60,620 + LRK53_RS00245 0.24 -0.1
60,620 + LRK53_RS00245 0.24 -2.1
60,620 + LRK53_RS00245 0.24 -0.0
60,621 - LRK53_RS00245 0.24 -0.8
60,621 - LRK53_RS00245 0.24 -1.7
60,621 - LRK53_RS00245 0.24 -0.9
60,621 - LRK53_RS00245 0.24 -0.2
60,621 - LRK53_RS00245 0.24 +0.6
60,621 - LRK53_RS00245 0.24 -0.0
60,621 - LRK53_RS00245 0.24 -2.7
60,621 - LRK53_RS00245 0.24 -0.0
60,881 + LRK53_RS00245 0.56 +0.1
60,881 + LRK53_RS00245 0.56 +0.4
60,882 - LRK53_RS00245 0.56 +0.6
60,882 - LRK53_RS00245 0.56 -1.3
60,989 + LRK53_RS00245 0.69 -1.8
60,989 + LRK53_RS00245 0.69 -1.1
60,989 + LRK53_RS00245 0.69 -1.6
60,989 + LRK53_RS00245 0.69 -0.6
60,989 + LRK53_RS00245 0.69 -1.0
60,989 + LRK53_RS00245 0.69 +0.4
60,990 - LRK53_RS00245 0.69 -2.1
60,990 - LRK53_RS00245 0.69 -0.6
60,990 - LRK53_RS00245 0.69 +0.5
60,990 - LRK53_RS00245 0.69 -0.0
61,227 + +0.0
61,227 + -0.5
61,227 + -1.7
61,228 - -1.2
61,228 - +1.5
61,228 - -1.0
61,228 - -1.0
61,228 - -0.0
61,274 - -1.6
61,274 - +0.1
61,383 + +0.8
61,383 + +0.8
61,383 + -0.7
61,384 - -2.1
61,384 - -0.4

Or see this region's nucleotide sequence